Gene annotation
Transcriptome id Sobic.008G018800.1,Sobic.008G018800.2,Sobic.008G018800.4,Sobic.008G018800.3,Sobic.008G018800.5
Synonym Sb08g001620, emb1379
Functional annotation EMB1379, putative, expressed
UniProt A0A1B6PBA2 , A0A1Z5R517 , A0A1Z5R4K5 , C5YQP4 , A0A1Z5R5C4
Pfam PF07574 PF08746 PF08746 PF07574
Panther DB PTHR20973 PTHR20973:SF0 PTHR20973:SF0 PTHR20973
NCBI CDD KOG4718; Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1)
KEGG Orthology -
Gene Ontology GO:0006281; DNA repair GO:0006281DNA repair


Orthologs (automatic annotation)
TAIR AT5G21140 : embryo defective 1379
RAP-DB (Rice) LOC_Os12g03360.1 : EMB1379, putative, expressed
MaizeGDB (Corn) Zm00025a053724
Brachypodium KQK10737
Barley HORVU0Hr1G010660.7 , HORVU0Hr1G010660.6 , HORVU0Hr1G010660.9 , HORVU0Hr1G010660.8 , HORVU0Hr1G010660.13 , HORVU0Hr1G010660.12 , HORVU0Hr1G010660.10 , HORVU0Hr1G010660.5 , HORVU0Hr1G010660.4
Wheat TraesCS5A02G141300 , TraesCS5B02G139600 , TraesCS5B02G139600 , TraesCS5D02G151100 , TraesCS5D02G151100
Populus -


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cDNA sequences
Sobic.008G018800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G395700 DNA repair protein RAD51 homolog 4, putative, expressed K10871: RAD51L3, RAD51-like protein 3
2 Sobic.001G007800 WD domain, G-beta repeat domain containing protein, expressed K11806: DCAF13, DDB1- and CUL4-associated factor 13
3 Sobic.009G002000 ankyrin repeat family protein, putative, expressed -
4 Sobic.001G334100 1-5-phosphoribosyl-5-5-phosphoribosylaminomethylideneaminoimidazole-4-carboxamide isomerase, chloroplast precursor, putative, expressed K01814: phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase
5 Sobic.009G208200 WD repeat-containing protein 55, putative, expressed -
6 Sobic.002G277200 rRNA-processing protein FCF, putative, expressed K14773: U3 small nucleolar RNA-associated protein 23
7 Sobic.002G005000 expressed protein K14557: U3 small nucleolar RNA-associated protein 6
8 Sobic.004G307500 phenylalanyl-tRNA synthetase, putative, expressed K01889: FARSA, phenylalanyl-tRNA synthetase alpha chain
9 Sobic.001G206500 nucleolar complex protein 2, putative, expressed K14833: nucleolar complex protein 2
10 Sobic.001G373000 nucleoporin interacting component, putative, expressed K14309: NUP93, nuclear pore complex protein Nup93
11 Sobic.004G067400 expressed protein -
12 Sobic.003G397700 sas10/Utp3 family protein, expressed K14765: NGDN, U3 small nucleolar ribonucleoprotein protein LCP5
13 Sobic.002G300500 DNA-directed RNA polymerase III subunit RPC8, putative, expressed K03022: RPC8, DNA-directed RNA polymerase III subunit RPC8
14 Sobic.007G089800 SET domain containing protein, expressed K19199: protein-histidine N-methyltransferase
15 Sobic.004G315500 RFC5 - Putative clamp loader of PCNA, replication factor C subunit 5, expressed K10756: replication factor C subunit 3/5
16 Sobic.004G272400 AAA-type ATPase family protein, putative, expressed K17681: ATPase family AAA domain-containing protein 3A/B
17 Sobic.004G340400 translation initiation factor eIF-2B subunit epsilon, putative, expressed K03240: translation initiation factor eIF-2B subunit epsilon
18 Sobic.003G376500 SET domain containing protein, expressed K05302: N-lysine methyltransferase SETD6
19 Sobic.001G408600 RNA pseudouridine synthase, putative, expressed -
20 Sobic.001G004100 WD domain, G-beta repeat domain containing protein, expressed -


Gene co-expression network
sample Sobic008G018800 Sobic008G018800 Sobic002G395700 Sobic002G395700 Sobic008G018800--Sobic002G395700 Sobic001G007800 Sobic001G007800 Sobic008G018800--Sobic001G007800 Sobic009G002000 Sobic009G002000 Sobic008G018800--Sobic009G002000 Sobic001G334100 Sobic001G334100 Sobic008G018800--Sobic001G334100 Sobic009G208200 Sobic009G208200 Sobic008G018800--Sobic009G208200 Sobic002G277200 Sobic002G277200 Sobic008G018800--Sobic002G277200 Sobic002G005000 Sobic002G005000 Sobic008G018800--Sobic002G005000 Sobic004G307500 Sobic004G307500 Sobic008G018800--Sobic004G307500 Sobic001G206500 Sobic001G206500 Sobic008G018800--Sobic001G206500 Sobic002G395700--Sobic008G018800 Sobic003G222000 Sobic003G222000 Sobic002G395700--Sobic003G222000 Sobic002G369701 Sobic002G369701 Sobic002G395700--Sobic002G369701 Sobic008G160500 Sobic008G160500 Sobic002G395700--Sobic008G160500 Sobic004G020100 Sobic004G020100 Sobic002G395700--Sobic004G020100 Sobic001G471000 Sobic001G471000 Sobic002G395700--Sobic001G471000 Sobic002G006401 Sobic002G006401 Sobic002G395700--Sobic002G006401 Sobic007G042900 Sobic007G042900 Sobic002G395700--Sobic007G042900 Sobic004G067400 Sobic004G067400 Sobic002G395700--Sobic004G067400 Sobic002G150700 Sobic002G150700 Sobic001G007800--Sobic002G150700 Sobic001G007800--Sobic004G307500 Sobic004G340400 Sobic004G340400 Sobic001G007800--Sobic004G340400 Sobic007G143500 Sobic007G143500 Sobic001G007800--Sobic007G143500 Sobic001G007800--Sobic001G334100 Sobic009G235000 Sobic009G235000 Sobic001G007800--Sobic009G235000 Sobic006G193300 Sobic006G193300 Sobic001G007800--Sobic006G193300 Sobic008G160000 Sobic008G160000 Sobic001G007800--Sobic008G160000 Sobic007G089800 Sobic007G089800 Sobic001G007800--Sobic007G089800 Sobic009G002000--Sobic002G277200 Sobic009G030400 Sobic009G030400 Sobic009G002000--Sobic009G030400 Sobic009G201800 Sobic009G201800 Sobic009G002000--Sobic009G201800 Sobic001G115500 Sobic001G115500 Sobic009G002000--Sobic001G115500 Sobic008G118500 Sobic008G118500 Sobic009G002000--Sobic008G118500 Sobic005G084900 Sobic005G084900 Sobic009G002000--Sobic005G084900 Sobic009G102900 Sobic009G102900 Sobic009G002000--Sobic009G102900 Sobic001G157600 Sobic001G157600 Sobic009G002000--Sobic001G157600 Sobic009G258500 Sobic009G258500 Sobic009G002000--Sobic009G258500 Sobic001G334100--Sobic007G143500 Sobic003G184400 Sobic003G184400 Sobic001G334100--Sobic003G184400 Sobic005G199200 Sobic005G199200 Sobic001G334100--Sobic005G199200 Sobic003G259600 Sobic003G259600 Sobic001G334100--Sobic003G259600 Sobic005G059400 Sobic005G059400 Sobic001G334100--Sobic005G059400 Sobic002G142600 Sobic002G142600 Sobic001G334100--Sobic002G142600 Sobic006G180700 Sobic006G180700 Sobic001G334100--Sobic006G180700 Sobic001G334100--Sobic004G067400 Sobic005G000300 Sobic005G000300 Sobic001G334100--Sobic005G000300 Sobic009G208200--Sobic008G018800 Sobic009G208200--Sobic002G395700 Sobic006G017600 Sobic006G017600 Sobic009G208200--Sobic006G017600 Sobic009G132600 Sobic009G132600 Sobic009G208200--Sobic009G132600 Sobic003G129300 Sobic003G129300 Sobic009G208200--Sobic003G129300 Sobic009G208200--Sobic009G030400 Sobic009G208200--Sobic009G002000 Sobic002G142700 Sobic002G142700 Sobic009G208200--Sobic002G142700 Sobic009G208200--Sobic008G160500 Sobic002G277200--Sobic009G002000 Sobic004G010700 Sobic004G010700 Sobic002G277200--Sobic004G010700 Sobic002G277200--Sobic009G258500 Sobic002G277200--Sobic009G201800 Sobic002G277200--Sobic001G157600 Sobic003G410400 Sobic003G410400 Sobic002G277200--Sobic003G410400 Sobic002G277200--Sobic009G102900 Sobic006G127500 Sobic006G127500 Sobic002G277200--Sobic006G127500 Sobic002G277200--Sobic002G142700 Sobic001G373000 Sobic001G373000 Sobic002G005000--Sobic001G373000 Sobic010G186600 Sobic010G186600 Sobic002G005000--Sobic010G186600 Sobic001G291800 Sobic001G291800 Sobic002G005000--Sobic001G291800 Sobic001G023800 Sobic001G023800 Sobic002G005000--Sobic001G023800 Sobic001G052400 Sobic001G052400 Sobic002G005000--Sobic001G052400 Sobic002G005000--Sobic004G307500 Sobic008G147200 Sobic008G147200 Sobic002G005000--Sobic008G147200 Sobic002G005000--Sobic004G340400 Sobic001G013300 Sobic001G013300 Sobic002G005000--Sobic001G013300 Sobic001G168900 Sobic001G168900 Sobic004G307500--Sobic001G168900 Sobic001G524400 Sobic001G524400 Sobic004G307500--Sobic001G524400 Sobic002G077900 Sobic002G077900 Sobic004G307500--Sobic002G077900 Sobic004G307500--Sobic002G005000 Sobic009G258400 Sobic009G258400 Sobic004G307500--Sobic009G258400 Sobic004G307500--Sobic001G291800 Sobic004G307500--Sobic007G143500 Sobic004G307500--Sobic001G007800 Sobic001G527300 Sobic001G527300 Sobic004G307500--Sobic001G527300 Sobic009G042100 Sobic009G042100 Sobic001G206500--Sobic009G042100 Sobic001G455800 Sobic001G455800 Sobic001G206500--Sobic001G455800 Sobic003G004300 Sobic003G004300 Sobic001G206500--Sobic003G004300 Sobic001G098400 Sobic001G098400 Sobic001G206500--Sobic001G098400 Sobic001G206500--Sobic003G222000 Sobic010G081700 Sobic010G081700 Sobic001G206500--Sobic010G081700 Sobic004G031300 Sobic004G031300 Sobic001G206500--Sobic004G031300 Sobic002G428100 Sobic002G428100 Sobic001G206500--Sobic002G428100 Sobic001G004100 Sobic001G004100 Sobic001G206500--Sobic001G004100
Octagon: transcription factors


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