Gene annotation
Transcriptome id Sobic.003G376500.4,Sobic.003G376500.3,Sobic.003G376500.2
Synonym Sb03g041640
Functional annotation SET domain containing protein, expressed
UniProt A0A1W0W0R4 , A0A1W0W0S1 , A0A1W0W0T6
Pfam PF00856
Panther DB PTHR13271 PTHR13271:SF30
NCBI CDD -
KEGG Orthology K05302; N-lysine methyltransferase SETD6
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT3G56570 : SET domain-containing protein
RAP-DB (Rice) LOC_Os01g65730.1 : SET domain containing protein, expressed
MaizeGDB (Corn) Zm00025a039507
Brachypodium KQK10826 , KQK10878
Barley -
Wheat TraesCS3A02G409800 , TraesCS3B02G442900 , TraesCS3D02G404400
Populus -


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cDNA sequences
Sobic.003G376500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G205900 WD repeat-containing protein, putative, expressed K14554: UTP21, U3 small nucleolar RNA-associated protein 21
2 Sobic.001G373000 nucleoporin interacting component, putative, expressed K14309: NUP93, nuclear pore complex protein Nup93
3 Sobic.001G408600 RNA pseudouridine synthase, putative, expressed -
4 Sobic.006G178100 coiled-coil domain-containing protein 139, putative, expressed K07583: tRNA pseudouridine synthase 10
5 Sobic.005G028100 nucleolar complex protein 2, putative, expressed K14833: nucleolar complex protein 2
6 Sobic.003G259600 ORC4 - Putative origin recognition complex subunit 4, expressed K02606: origin recognition complex subunit 4
7 Sobic.001G334100 1-5-phosphoribosyl-5-5-phosphoribosylaminomethylideneaminoimidazole-4-carboxamide isomerase, chloroplast precursor, putative, expressed K01814: phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase
8 Sobic.003G039500 expressed protein K06947: GRC3, polynucleotide 5'-hydroxyl-kinase GRC3/NOL9
9 Sobic.004G224600 expressed protein -
10 Sobic.005G108000 - -
11 Sobic.004G307500 phenylalanyl-tRNA synthetase, putative, expressed K01889: FARSA, phenylalanyl-tRNA synthetase alpha chain
12 Sobic.003G432300 Candidate orthologue to the genomic region of wheat Hessian fy resistance gene H32(PubMedID : 28624908)@expressed protein K14794: ribosomal RNA-processing protein 12
13 Sobic.009G235000 WD domain, G-beta repeat domain containing protein, expressed K14829: pre-rRNA-processing protein IPI3
14 Sobic.002G005000 expressed protein K14557: U3 small nucleolar RNA-associated protein 6
15 Sobic.008G163500 WD domain, G-beta repeat domain containing protein, expressed K14552: NAN1, UTP17, NET1-associated nuclear protein 1 (U3 small nucleolar RNA-associated protein 17)
16 Sobic.006G002800 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed K15332: tRNA (uracil-5-)-methyltransferase
17 Sobic.001G033900 mTERF family protein, expressed K15032: mTERF domain-containing protein, mitochondrial
18 Sobic.004G031300 PPR repeat domain containing protein, putative, expressed -
19 Sobic.002G208400 regulator protein, putative, expressed -
20 Sobic.001G024000 expressed protein K14844: pumilio homology domain family member 6


Gene co-expression network
sample Sobic003G376500 Sobic003G376500 Sobic010G205900 Sobic010G205900 Sobic003G376500--Sobic010G205900 Sobic001G373000 Sobic001G373000 Sobic003G376500--Sobic001G373000 Sobic001G408600 Sobic001G408600 Sobic003G376500--Sobic001G408600 Sobic006G178100 Sobic006G178100 Sobic003G376500--Sobic006G178100 Sobic005G028100 Sobic005G028100 Sobic003G376500--Sobic005G028100 Sobic003G259600 Sobic003G259600 Sobic003G376500--Sobic003G259600 Sobic001G334100 Sobic001G334100 Sobic003G376500--Sobic001G334100 Sobic003G039500 Sobic003G039500 Sobic003G376500--Sobic003G039500 Sobic004G224600 Sobic004G224600 Sobic003G376500--Sobic004G224600 Sobic008G049100 Sobic008G049100 Sobic010G205900--Sobic008G049100 Sobic003G123200 Sobic003G123200 Sobic010G205900--Sobic003G123200 Sobic009G246500 Sobic009G246500 Sobic010G205900--Sobic009G246500 Sobic010G205900--Sobic005G028100 Sobic002G071400 Sobic002G071400 Sobic010G205900--Sobic002G071400 Sobic005G098800 Sobic005G098800 Sobic010G205900--Sobic005G098800 Sobic008G163500 Sobic008G163500 Sobic010G205900--Sobic008G163500 Sobic003G199300 Sobic003G199300 Sobic010G205900--Sobic003G199300 Sobic001G024000 Sobic001G024000 Sobic010G205900--Sobic001G024000 Sobic009G104900 Sobic009G104900 Sobic001G373000--Sobic009G104900 Sobic004G038100 Sobic004G038100 Sobic001G373000--Sobic004G038100 Sobic002G005000 Sobic002G005000 Sobic001G373000--Sobic002G005000 Sobic001G373000--Sobic003G259600 Sobic003G361400 Sobic003G361400 Sobic001G373000--Sobic003G361400 Sobic010G188000 Sobic010G188000 Sobic001G373000--Sobic010G188000 Sobic002G126800 Sobic002G126800 Sobic001G373000--Sobic002G126800 Sobic001G013300 Sobic001G013300 Sobic001G373000--Sobic001G013300 Sobic001G373000--Sobic005G028100 Sobic003G246000 Sobic003G246000 Sobic001G408600--Sobic003G246000 Sobic001G408600--Sobic001G373000 Sobic001G461300 Sobic001G461300 Sobic001G408600--Sobic001G461300 Sobic007G089800 Sobic007G089800 Sobic001G408600--Sobic007G089800 Sobic001G004100 Sobic001G004100 Sobic001G408600--Sobic001G004100 Sobic006G125900 Sobic006G125900 Sobic001G408600--Sobic006G125900 Sobic009G211200 Sobic009G211200 Sobic001G408600--Sobic009G211200 Sobic006G002800 Sobic006G002800 Sobic001G408600--Sobic006G002800 Sobic001G145400 Sobic001G145400 Sobic001G408600--Sobic001G145400 Sobic006G178100--Sobic004G224600 Sobic009G254100 Sobic009G254100 Sobic006G178100--Sobic009G254100 Sobic005G108000 Sobic005G108000 Sobic006G178100--Sobic005G108000 Sobic003G143800 Sobic003G143800 Sobic006G178100--Sobic003G143800 Sobic006G125500 Sobic006G125500 Sobic006G178100--Sobic006G125500 Sobic003G146600 Sobic003G146600 Sobic006G178100--Sobic003G146600 Sobic002G371600 Sobic002G371600 Sobic006G178100--Sobic002G371600 Sobic006G178100--Sobic001G408600 Sobic004G322300 Sobic004G322300 Sobic006G178100--Sobic004G322300 Sobic004G036700 Sobic004G036700 Sobic005G028100--Sobic004G036700 Sobic005G028100--Sobic008G163500 Sobic006G225400 Sobic006G225400 Sobic005G028100--Sobic006G225400 Sobic005G028100--Sobic010G205900 Sobic005G028100--Sobic003G123200 Sobic003G432300 Sobic003G432300 Sobic005G028100--Sobic003G432300 Sobic005G028100--Sobic002G126800 Sobic005G028100--Sobic001G373000 Sobic002G132600 Sobic002G132600 Sobic005G028100--Sobic002G132600 Sobic003G259600--Sobic003G361400 Sobic003G360300 Sobic003G360300 Sobic003G259600--Sobic003G360300 Sobic003G259600--Sobic001G373000 Sobic003G331000 Sobic003G331000 Sobic003G259600--Sobic003G331000 Sobic003G259600--Sobic004G038100 Sobic010G269300 Sobic010G269300 Sobic003G259600--Sobic010G269300 Sobic003G028400 Sobic003G028400 Sobic003G259600--Sobic003G028400 Sobic002G142700 Sobic002G142700 Sobic003G259600--Sobic002G142700 Sobic003G259600--Sobic001G334100 Sobic007G143500 Sobic007G143500 Sobic001G334100--Sobic007G143500 Sobic003G184400 Sobic003G184400 Sobic001G334100--Sobic003G184400 Sobic005G199200 Sobic005G199200 Sobic001G334100--Sobic005G199200 Sobic001G334100--Sobic003G259600 Sobic005G059400 Sobic005G059400 Sobic001G334100--Sobic005G059400 Sobic002G142600 Sobic002G142600 Sobic001G334100--Sobic002G142600 Sobic006G180700 Sobic006G180700 Sobic001G334100--Sobic006G180700 Sobic004G067400 Sobic004G067400 Sobic001G334100--Sobic004G067400 Sobic005G000300 Sobic005G000300 Sobic001G334100--Sobic005G000300 Sobic001G460500 Sobic001G460500 Sobic003G039500--Sobic001G460500 Sobic003G039500--Sobic003G259600 Sobic003G039500--Sobic001G373000 Sobic003G039500--Sobic004G224600 Sobic003G039500--Sobic003G376500 Sobic003G039500--Sobic010G205900 Sobic004G356200 Sobic004G356200 Sobic003G039500--Sobic004G356200 Sobic003G039500--Sobic003G360300 Sobic003G039500--Sobic002G371600 Sobic004G224600--Sobic006G002800 Sobic004G224600--Sobic003G146600 Sobic001G376900 Sobic001G376900 Sobic004G224600--Sobic001G376900 Sobic004G224600--Sobic006G125500 Sobic002G235200 Sobic002G235200 Sobic004G224600--Sobic002G235200 Sobic004G224600--Sobic009G246500 Sobic003G042400 Sobic003G042400 Sobic004G224600--Sobic003G042400 Sobic004G224600--Sobic001G145400 Sobic006G086600 Sobic006G086600 Sobic004G224600--Sobic006G086600
Octagon: transcription factors


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