Gene annotation
Transcriptome id Sobic.009G235000.1
Synonym RID3, Sb09g028760
Functional annotation WD domain, G-beta repeat domain containing protein, expressed
UniProt C5YVW8
Pfam PF00400
Panther DB PTHR18763
NCBI CDD KOG0316; Conserved WD40 repeat-containing protein KOG0643Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) KOG0295WD40 repeat-containing protein KOG0315G-protein beta subunit-like protein (contains WD40 repeats)
KEGG Orthology K14829; pre-rRNA-processing protein IPI3
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT3G49180 : Transducin/WD40 repeat-like superfamily protein
RAP-DB (Rice) LOC_Os07g22534.1 : WD domain, G-beta repeat domain containing protein, expressed
MaizeGDB (Corn) Zm00025a044603
Brachypodium PNT76368 , PNT76362 , PNT76363 , PNT76366 , PNT76367 , KQJ95920 , KQJ95922 , KQJ95921 , PNT67032 , PNT67033 , PNT67034
Barley HORVU7Hr1G085500.3 , HORVU7Hr1G085500.2 , HORVU7Hr1G085500.1 , HORVU7Hr1G085500.6 , HORVU7Hr1G085500.5 , HORVU7Hr1G085500.4
Wheat TraesCS7A02G368600 , TraesCS7A02G368600 , TraesCS7D02G354300 , TraesCS7D02G354300 , TraesCS7D02G354300 , TraesCS7B02G259800 , TraesCS7B02G259800
Populus -


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cDNA sequences
Sobic.009G235000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G252000 expressed protein K14545: ribosomal RNA-processing protein 7
2 Sobic.001G007800 WD domain, G-beta repeat domain containing protein, expressed K11806: DCAF13, DDB1- and CUL4-associated factor 13
3 Sobic.006G135900 cell division control protein 48 homolog B, putative, expressed -
4 Sobic.008G160000 tetratricopeptide repeat domain containing protein, expressed -
5 Sobic.009G249800 AARP2CN domain containing protein, expressed K14799: pre-rRNA-processing protein TSR1
6 Sobic.006G142400 suppressor of stem-loop protein 1, putative, expressed K03142: TFIIH2, GTF2H2, transcription initiation factor TFIIH subunit 2
7 Sobic.001G017700 diphthamide biosynthesis protein, putative, expressed K17866: diphthamide biosynthesis protein 2
8 Sobic.002G423500 T-complex protein, putative, expressed K09498: T-complex protein 1 subunit zeta
9 Sobic.001G251600 SET domain protein 123, putative, expressed K11426: [histone H3]-lysine4/36 N-trimethyltransferase SMYD
10 Sobic.003G214300 expressed protein -
11 Sobic.010G205900 WD repeat-containing protein, putative, expressed K14554: UTP21, U3 small nucleolar RNA-associated protein 21
12 Sobic.002G408900 adenyl cyclase, putative, expressed -
13 Sobic.001G007900 BCCIP, putative, expressed K15262: BCP1, protein BCP1
14 Sobic.004G307500 phenylalanyl-tRNA synthetase, putative, expressed K01889: FARSA, phenylalanyl-tRNA synthetase alpha chain
15 Sobic.002G014400 T-complex protein, putative, expressed K09497: T-complex protein 1 subunit epsilon
16 Sobic.001G460500 T-complex protein, putative, expressed K09495: CCT3, T-complex protein 1 subunit gamma
17 Sobic.001G393700 expressed protein -
18 Sobic.002G150700 polyadenylate-binding protein, putative, expressed K13126: polyadenylate-binding protein
19 Sobic.003G397700 sas10/Utp3 family protein, expressed K14765: NGDN, U3 small nucleolar ribonucleoprotein protein LCP5
20 Sobic.001G334100 1-5-phosphoribosyl-5-5-phosphoribosylaminomethylideneaminoimidazole-4-carboxamide isomerase, chloroplast precursor, putative, expressed K01814: phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase


Gene co-expression network
sample Sobic009G235000 Sobic009G235000 Sobic004G252000 Sobic004G252000 Sobic009G235000--Sobic004G252000 Sobic001G007800 Sobic001G007800 Sobic009G235000--Sobic001G007800 Sobic006G135900 Sobic006G135900 Sobic009G235000--Sobic006G135900 Sobic008G160000 Sobic008G160000 Sobic009G235000--Sobic008G160000 Sobic009G249800 Sobic009G249800 Sobic009G235000--Sobic009G249800 Sobic006G142400 Sobic006G142400 Sobic009G235000--Sobic006G142400 Sobic001G017700 Sobic001G017700 Sobic009G235000--Sobic001G017700 Sobic002G423500 Sobic002G423500 Sobic009G235000--Sobic002G423500 Sobic001G251600 Sobic001G251600 Sobic009G235000--Sobic001G251600 Sobic004G252000--Sobic002G423500 Sobic004G326600 Sobic004G326600 Sobic004G252000--Sobic004G326600 Sobic002G014400 Sobic002G014400 Sobic004G252000--Sobic002G014400 Sobic004G252000--Sobic009G235000 Sobic009G258500 Sobic009G258500 Sobic004G252000--Sobic009G258500 Sobic002G365900 Sobic002G365900 Sobic004G252000--Sobic002G365900 Sobic004G047200 Sobic004G047200 Sobic004G252000--Sobic004G047200 Sobic004G252000--Sobic006G135900 Sobic006G084000 Sobic006G084000 Sobic004G252000--Sobic006G084000 Sobic002G150700 Sobic002G150700 Sobic001G007800--Sobic002G150700 Sobic004G307500 Sobic004G307500 Sobic001G007800--Sobic004G307500 Sobic004G340400 Sobic004G340400 Sobic001G007800--Sobic004G340400 Sobic007G143500 Sobic007G143500 Sobic001G007800--Sobic007G143500 Sobic001G334100 Sobic001G334100 Sobic001G007800--Sobic001G334100 Sobic001G007800--Sobic009G235000 Sobic006G193300 Sobic006G193300 Sobic001G007800--Sobic006G193300 Sobic001G007800--Sobic008G160000 Sobic007G089800 Sobic007G089800 Sobic001G007800--Sobic007G089800 Sobic006G135900--Sobic008G160000 Sobic001G455800 Sobic001G455800 Sobic006G135900--Sobic001G455800 Sobic006G235700 Sobic006G235700 Sobic006G135900--Sobic006G235700 Sobic001G524400 Sobic001G524400 Sobic006G135900--Sobic001G524400 Sobic009G138700 Sobic009G138700 Sobic006G135900--Sobic009G138700 Sobic007G184500 Sobic007G184500 Sobic006G135900--Sobic007G184500 Sobic006G135900--Sobic009G235000 Sobic008G103300 Sobic008G103300 Sobic006G135900--Sobic008G103300 Sobic008G016100 Sobic008G016100 Sobic006G135900--Sobic008G016100 Sobic008G160000--Sobic004G340400 Sobic008G160000--Sobic001G455800 Sobic001G259000 Sobic001G259000 Sobic008G160000--Sobic001G259000 Sobic008G160000--Sobic009G138700 Sobic008G160000--Sobic002G150700 Sobic009G016400 Sobic009G016400 Sobic008G160000--Sobic009G016400 Sobic001G145400 Sobic001G145400 Sobic008G160000--Sobic001G145400 Sobic006G002800 Sobic006G002800 Sobic008G160000--Sobic006G002800 Sobic004G224600 Sobic004G224600 Sobic008G160000--Sobic004G224600 Sobic002G408900 Sobic002G408900 Sobic009G249800--Sobic002G408900 Sobic004G208500 Sobic004G208500 Sobic009G249800--Sobic004G208500 Sobic009G249800--Sobic001G251600 Sobic002G246700 Sobic002G246700 Sobic009G249800--Sobic002G246700 Sobic002G295900 Sobic002G295900 Sobic009G249800--Sobic002G295900 Sobic006G010400 Sobic006G010400 Sobic009G249800--Sobic006G010400 Sobic001G015400 Sobic001G015400 Sobic009G249800--Sobic001G015400 Sobic001G460500 Sobic001G460500 Sobic009G249800--Sobic001G460500 Sobic004G256000 Sobic004G256000 Sobic009G249800--Sobic004G256000 Sobic003G214300 Sobic003G214300 Sobic006G142400--Sobic003G214300 Sobic001G099900 Sobic001G099900 Sobic006G142400--Sobic001G099900 Sobic001G042200 Sobic001G042200 Sobic006G142400--Sobic001G042200 Sobic010G264000 Sobic010G264000 Sobic006G142400--Sobic010G264000 Sobic007G042900 Sobic007G042900 Sobic006G142400--Sobic007G042900 Sobic009G040800 Sobic009G040800 Sobic006G142400--Sobic009G040800 Sobic006G142400--Sobic002G150700 Sobic001G012900 Sobic001G012900 Sobic006G142400--Sobic001G012900 Sobic004G084500 Sobic004G084500 Sobic006G142400--Sobic004G084500 Sobic001G017700--Sobic001G145400 Sobic006G208500 Sobic006G208500 Sobic001G017700--Sobic006G208500 Sobic006G086600 Sobic006G086600 Sobic001G017700--Sobic006G086600 Sobic006G136400 Sobic006G136400 Sobic001G017700--Sobic006G136400 Sobic003G057700 Sobic003G057700 Sobic001G017700--Sobic003G057700 Sobic003G287100 Sobic003G287100 Sobic001G017700--Sobic003G287100 Sobic008G009600 Sobic008G009600 Sobic001G017700--Sobic008G009600 Sobic009G101200 Sobic009G101200 Sobic001G017700--Sobic009G101200 Sobic003G300300 Sobic003G300300 Sobic001G017700--Sobic003G300300 Sobic005G163700 Sobic005G163700 Sobic002G423500--Sobic005G163700 Sobic002G423500--Sobic004G047200 Sobic002G423500--Sobic002G014400 Sobic002G423500--Sobic001G460500 Sobic002G423500--Sobic004G326600 Sobic004G215700 Sobic004G215700 Sobic002G423500--Sobic004G215700 Sobic001G522000 Sobic001G522000 Sobic002G423500--Sobic001G522000 Sobic006G041100 Sobic006G041100 Sobic002G423500--Sobic006G041100 Sobic001G467100 Sobic001G467100 Sobic002G423500--Sobic001G467100 Sobic001G251600--Sobic006G010400 Sobic001G251600--Sobic002G423500 SobicK004100 SobicK004100 Sobic001G251600--SobicK004100 Sobic001G251600--Sobic004G208500 Sobic001G251600--Sobic001G145400 Sobic001G251600--Sobic009G249800 Sobic001G251600--Sobic002G408900 Sobic002G394600 Sobic002G394600 Sobic001G251600--Sobic002G394600 Sobic002G412700 Sobic002G412700 Sobic001G251600--Sobic002G412700
Octagon: transcription factors


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