Gene annotation
Transcriptome id Sobic.001G017700.2,Sobic.001G017700.1
Synonym Sb01g001720
Functional annotation diphthamide biosynthesis protein, putative, expressed
UniProt A0A1Z5S4B0 , C5WT13
Pfam PF01866
Panther DB PTHR10762 PTHR10762:SF2
NCBI CDD KOG2648; Diphthamide biosynthesis protein
KEGG Orthology K17866; diphthamide biosynthesis protein 2
Gene Ontology GO:0017183; peptidyl-diphthamide biosynthetic process from peptidyl-histidine


Orthologs (automatic annotation)
TAIR AT3G59630 : diphthamide synthesis DPH2 family protein
RAP-DB (Rice) LOC_Os11g16430.1 : diphthamide biosynthesis protein, putative, expressed
MaizeGDB (Corn) Zm00025a008975
Brachypodium KQJ88692 , KQJ88691
Barley HORVU4Hr1G013960.5 , HORVU4Hr1G013960.4 , HORVU4Hr1G013960.7 , HORVU4Hr1G013960.6 , HORVU4Hr1G013960.1 , HORVU4Hr1G013960.3 , HORVU4Hr1G013960.2 , HORVU4Hr1G013960.9 , HORVU4Hr1G013960.8 , HORVU4Hr1G013960.11 , HORVU4Hr1G013960.10 , HORVU4Hr1G013960.13 , HORVU4Hr1G013960.12 , HORVU4Hr1G013960.15 , HORVU4Hr1G013960.14
Wheat TraesCS4B02G083800
Populus -


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cDNA sequences
Sobic.001G017700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G145400 threonyl-tRNA synthetase, mitochondrial precursor, putative, expressed K01868: TARS, threonyl-tRNA synthetase
2 Sobic.006G208500 proteasome/cyclosome repeat containing protein, expressed K03032: PSMD1, 26S proteasome regulatory subunit N2
3 Sobic.006G086600 IKI3 family protein, expressed K11373: ELP1, IKI3, elongator complex protein 1
4 Sobic.006G136400 eukaryotic initiation factor iso-4F subunit p82-34, putative, expressed K03260: translation initiation factor 4G
5 Sobic.003G057700 WD domain, G-beta repeat domain containing protein, expressed -
6 Sobic.003G287100 NADPH reductase, putative, expressed -
7 Sobic.008G009600 double-stranded RNA binding motif containing protein, expressed -
8 Sobic.009G101200 expressed protein K17973: NAA25, N-terminal acetyltransferase B complex non-catalytic subunit
9 Sobic.003G300300 la domain containing protein, expressed K15191: La-related protein 7
10 Sobic.004G178200 ligatin, putative, expressed K15027: translation initiation factor 2D
11 Sobic.003G006400 metallo-beta-lactamase family protein, putative, expressed K00784: ribonuclease Z
12 Sobic.010G059500 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K12818: DHX8, ATP-dependent RNA helicase DHX8/PRP22
13 Sobic.004G135400 expressed protein -
14 Sobic.002G235200 PPR repeat domain containing protein, putative, expressed -
15 Sobic.004G339100 endoribonuclease, putative, expressed K06927: diphthine-ammonia ligase
16 Sobic.001G099900 WD domain, G-beta repeat domain containing protein, expressed K14548: UTP4, U3 small nucleolar RNA-associated protein 4
17 Sobic.001G214600 expressed protein -
18 Sobic.010G007100 AAA family ATPase, putative, expressed K14571: RIX7, ribosome biogenesis ATPase
19 Sobic.002G308500 peptide-Nasparagine amidase, putative, expressed K01456: E3.5.1.52, NGLY1, peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase
20 Sobic.001G259000 initiation factor 2 subunit family domain containing protein, expressed K03754: translation initiation factor eIF-2B subunit beta


Gene co-expression network
sample Sobic001G017700 Sobic001G017700 Sobic001G145400 Sobic001G145400 Sobic001G017700--Sobic001G145400 Sobic006G208500 Sobic006G208500 Sobic001G017700--Sobic006G208500 Sobic006G086600 Sobic006G086600 Sobic001G017700--Sobic006G086600 Sobic006G136400 Sobic006G136400 Sobic001G017700--Sobic006G136400 Sobic003G057700 Sobic003G057700 Sobic001G017700--Sobic003G057700 Sobic003G287100 Sobic003G287100 Sobic001G017700--Sobic003G287100 Sobic008G009600 Sobic008G009600 Sobic001G017700--Sobic008G009600 Sobic009G101200 Sobic009G101200 Sobic001G017700--Sobic009G101200 Sobic003G300300 Sobic003G300300 Sobic001G017700--Sobic003G300300 Sobic001G145400--Sobic006G086600 Sobic001G035200 Sobic001G035200 Sobic001G145400--Sobic001G035200 Sobic010G059500 Sobic010G059500 Sobic001G145400--Sobic010G059500 Sobic006G077200 Sobic006G077200 Sobic001G145400--Sobic006G077200 Sobic003G405500 Sobic003G405500 Sobic001G145400--Sobic003G405500 Sobic010G007100 Sobic010G007100 Sobic001G145400--Sobic010G007100 Sobic004G340400 Sobic004G340400 Sobic001G145400--Sobic004G340400 Sobic009G084900 Sobic009G084900 Sobic001G145400--Sobic009G084900 Sobic004G085000 Sobic004G085000 Sobic001G145400--Sobic004G085000 Sobic004G135400 Sobic004G135400 Sobic006G208500--Sobic004G135400 Sobic003G006400 Sobic003G006400 Sobic006G208500--Sobic003G006400 Sobic006G208500--Sobic006G136400 Sobic009G245800 Sobic009G245800 Sobic006G208500--Sobic009G245800 Sobic006G126100 Sobic006G126100 Sobic006G208500--Sobic006G126100 Sobic004G039600 Sobic004G039600 Sobic006G208500--Sobic004G039600 Sobic006G200700 Sobic006G200700 Sobic006G208500--Sobic006G200700 Sobic001G369000 Sobic001G369000 Sobic006G208500--Sobic001G369000 Sobic004G277200 Sobic004G277200 Sobic006G208500--Sobic004G277200 Sobic010G003400 Sobic010G003400 Sobic006G086600--Sobic010G003400 Sobic006G086600--Sobic001G145400 Sobic001G089600 Sobic001G089600 Sobic006G086600--Sobic001G089600 Sobic006G086600--Sobic009G101200 Sobic001G453400 Sobic001G453400 Sobic006G086600--Sobic001G453400 Sobic004G320500 Sobic004G320500 Sobic006G086600--Sobic004G320500 Sobic002G235200 Sobic002G235200 Sobic006G086600--Sobic002G235200 Sobic007G220300 Sobic007G220300 Sobic006G086600--Sobic007G220300 Sobic006G086600--Sobic010G007100 Sobic008G004600 Sobic008G004600 Sobic006G136400--Sobic008G004600 Sobic004G178200 Sobic004G178200 Sobic006G136400--Sobic004G178200 Sobic006G136400--Sobic006G208500 Sobic004G131300 Sobic004G131300 Sobic006G136400--Sobic004G131300 Sobic006G136400--Sobic004G039600 Sobic006G136400--Sobic006G126100 Sobic002G262900 Sobic002G262900 Sobic006G136400--Sobic002G262900 Sobic001G447300 Sobic001G447300 Sobic006G136400--Sobic001G447300 Sobic002G142900 Sobic002G142900 Sobic006G136400--Sobic002G142900 Sobic007G120500 Sobic007G120500 Sobic003G057700--Sobic007G120500 Sobic010G147833 Sobic010G147833 Sobic003G057700--Sobic010G147833 Sobic003G249600 Sobic003G249600 Sobic003G057700--Sobic003G249600 Sobic003G057700--Sobic001G145400 Sobic003G057700--Sobic006G077200 Sobic007G132100 Sobic007G132100 Sobic003G057700--Sobic007G132100 Sobic001G276200 Sobic001G276200 Sobic003G057700--Sobic001G276200 Sobic001G515100 Sobic001G515100 Sobic003G057700--Sobic001G515100 Sobic001G493200 Sobic001G493200 Sobic003G057700--Sobic001G493200 Sobic004G339100 Sobic004G339100 Sobic003G287100--Sobic004G339100 Sobic003G287100--Sobic001G017700 Sobic001G201500 Sobic001G201500 Sobic003G287100--Sobic001G201500 Sobic001G201400 Sobic001G201400 Sobic003G287100--Sobic001G201400 Sobic007G184500 Sobic007G184500 Sobic003G287100--Sobic007G184500 Sobic003G382500 Sobic003G382500 Sobic003G287100--Sobic003G382500 Sobic007G077400 Sobic007G077400 Sobic003G287100--Sobic007G077400 Sobic006G114500 Sobic006G114500 Sobic003G287100--Sobic006G114500 Sobic003G287100--Sobic006G208500 Sobic006G049600 Sobic006G049600 Sobic008G009600--Sobic006G049600 Sobic004G011000 Sobic004G011000 Sobic008G009600--Sobic004G011000 Sobic008G009600--Sobic001G017700 Sobic001G142100 Sobic001G142100 Sobic008G009600--Sobic001G142100 Sobic010G073200 Sobic010G073200 Sobic008G009600--Sobic010G073200 Sobic003G407600 Sobic003G407600 Sobic008G009600--Sobic003G407600 Sobic008G009600--Sobic001G145400 Sobic008G009600--Sobic009G101200 Sobic006G226300 Sobic006G226300 Sobic008G009600--Sobic006G226300 Sobic009G101200--Sobic006G086600 Sobic009G101200--Sobic010G003400 Sobic009G101200--Sobic001G145400 Sobic001G259000 Sobic001G259000 Sobic009G101200--Sobic001G259000 Sobic009G101200--Sobic004G085000 Sobic001G052400 Sobic001G052400 Sobic009G101200--Sobic001G052400 Sobic009G246500 Sobic009G246500 Sobic009G101200--Sobic009G246500 Sobic001G429600 Sobic001G429600 Sobic009G101200--Sobic001G429600 Sobic009G101200--Sobic006G049600 Sobic003G300300--Sobic001G017700 Sobic006G083400 Sobic006G083400 Sobic003G300300--Sobic006G083400 Sobic010G034000 Sobic010G034000 Sobic003G300300--Sobic010G034000 Sobic001G524400 Sobic001G524400 Sobic003G300300--Sobic001G524400 Sobic004G246100 Sobic004G246100 Sobic003G300300--Sobic004G246100 Sobic007G041500 Sobic007G041500 Sobic003G300300--Sobic007G041500 Sobic009G137100 Sobic009G137100 Sobic003G300300--Sobic009G137100 Sobic010G166400 Sobic010G166400 Sobic003G300300--Sobic010G166400 Sobic003G300300--Sobic001G145400
Octagon: transcription factors


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