Gene annotation
Transcriptome id Sobic.003G300300.3,Sobic.003G300300.2,Sobic.003G300300.1
Synonym Sb04g005500
Functional annotation la domain containing protein, expressed
UniProt A0A1B6Q655 , A0A1B6Q666 , A0A1B6Q665
Pfam PF05383
Panther DB PTHR22792 PTHR22792:SF58
NCBI CDD KOG1855; Predicted RNA-binding protein
KEGG Orthology K15191; La-related protein 7
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G46250 : RNA-binding protein
RAP-DB (Rice) LOC_Os01g55170.1 : la domain containing protein, expressed
MaizeGDB (Corn) Zm00025a040026 , Zm00025a027525
Brachypodium -
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.003G300300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G017700 diphthamide biosynthesis protein, putative, expressed K17866: diphthamide biosynthesis protein 2
2 Sobic.006G083400 OsPDIL5-2 protein disulfide isomerase PDIL5-2, expressed K09580: PDIA1, protein disulfide-isomerase A1
3 Sobic.010G034000 zinc carboxypeptidase family protein, putative, expressed K07752: carboxypeptidase D
4 Sobic.001G524400 G-patch domain containing protein, expressed K11135: Pin2-interacting protein X1
5 Sobic.004G246100 nicalin, putative, expressed K06171: nicastrin
6 Sobic.007G041500 diacylglycerol kinase, putative, expressed -
7 Sobic.009G137100 bZIP transcription factor domain containing protein, expressed -
8 Sobic.010G166400 initiator tRNA phosphoribosyl transferase family protein, putative, expressed K15463: tRNA A64-2'-O-ribosylphosphate transferase
9 Sobic.001G145400 threonyl-tRNA synthetase, mitochondrial precursor, putative, expressed K01868: TARS, threonyl-tRNA synthetase
10 Sobic.008G014500 RNA recognition motif containing protein, expressed K13161: heterogeneous nuclear ribonucleoprotein R
11 Sobic.002G275600 RFC1 - Putative clamp loader of PCNA, replication factor C subunit 1, expressed K10754: replication factor C subunit 1
12 Sobic.006G208500 proteasome/cyclosome repeat containing protein, expressed K03032: PSMD1, 26S proteasome regulatory subunit N2
13 Sobic.002G235200 PPR repeat domain containing protein, putative, expressed -
14 Sobic.003G006400 metallo-beta-lactamase family protein, putative, expressed K00784: ribonuclease Z
15 Sobic.006G224300 APO, putative, expressed -
16 Sobic.006G086600 IKI3 family protein, expressed K11373: ELP1, IKI3, elongator complex protein 1
17 Sobic.006G200700 elongation factor Tu, putative, expressed K14416: elongation factor 1 alpha-like protein
18 Sobic.004G178200 ligatin, putative, expressed K15027: translation initiation factor 2D
19 Sobic.001G509500 glutamyl-tRNA synthetase, cytoplasmic, putative, expressed K01885: EARS, glutamyl-tRNA synthetase
20 Sobic.003G146600 pumilio-family RNA binding repeat containing protein, expressed K14790: nucleolar protein 9


Gene co-expression network
sample Sobic003G300300 Sobic003G300300 Sobic001G017700 Sobic001G017700 Sobic003G300300--Sobic001G017700 Sobic006G083400 Sobic006G083400 Sobic003G300300--Sobic006G083400 Sobic010G034000 Sobic010G034000 Sobic003G300300--Sobic010G034000 Sobic001G524400 Sobic001G524400 Sobic003G300300--Sobic001G524400 Sobic004G246100 Sobic004G246100 Sobic003G300300--Sobic004G246100 Sobic007G041500 Sobic007G041500 Sobic003G300300--Sobic007G041500 Sobic009G137100 Sobic009G137100 Sobic003G300300--Sobic009G137100 Sobic010G166400 Sobic010G166400 Sobic003G300300--Sobic010G166400 Sobic001G145400 Sobic001G145400 Sobic003G300300--Sobic001G145400 Sobic001G017700--Sobic001G145400 Sobic006G208500 Sobic006G208500 Sobic001G017700--Sobic006G208500 Sobic006G086600 Sobic006G086600 Sobic001G017700--Sobic006G086600 Sobic006G136400 Sobic006G136400 Sobic001G017700--Sobic006G136400 Sobic003G057700 Sobic003G057700 Sobic001G017700--Sobic003G057700 Sobic003G287100 Sobic003G287100 Sobic001G017700--Sobic003G287100 Sobic008G009600 Sobic008G009600 Sobic001G017700--Sobic008G009600 Sobic009G101200 Sobic009G101200 Sobic001G017700--Sobic009G101200 Sobic001G017700--Sobic003G300300 Sobic006G083400--Sobic003G300300 Sobic006G083400--Sobic007G041500 Sobic006G083400--Sobic010G034000 Sobic007G120500 Sobic007G120500 Sobic006G083400--Sobic007G120500 Sobic007G061700 Sobic007G061700 Sobic006G083400--Sobic007G061700 Sobic003G259100 Sobic003G259100 Sobic006G083400--Sobic003G259100 Sobic006G083400--Sobic001G017700 Sobic002G058400 Sobic002G058400 Sobic006G083400--Sobic002G058400 Sobic006G245400 Sobic006G245400 Sobic006G083400--Sobic006G245400 Sobic008G099800 Sobic008G099800 Sobic010G034000--Sobic008G099800 Sobic010G034000--Sobic007G041500 Sobic010G034000--Sobic003G259100 Sobic001G065000 Sobic001G065000 Sobic010G034000--Sobic001G065000 Sobic010G116600 Sobic010G116600 Sobic010G034000--Sobic010G116600 Sobic004G277200 Sobic004G277200 Sobic010G034000--Sobic004G277200 Sobic003G093800 Sobic003G093800 Sobic010G034000--Sobic003G093800 Sobic001G058700 Sobic001G058700 Sobic010G034000--Sobic001G058700 Sobic001G281100 Sobic001G281100 Sobic010G034000--Sobic001G281100 Sobic004G307500 Sobic004G307500 Sobic001G524400--Sobic004G307500 Sobic010G203300 Sobic010G203300 Sobic001G524400--Sobic010G203300 Sobic006G135900 Sobic006G135900 Sobic001G524400--Sobic006G135900 Sobic007G039400 Sobic007G039400 Sobic001G524400--Sobic007G039400 Sobic001G524400--Sobic003G300300 Sobic008G103300 Sobic008G103300 Sobic001G524400--Sobic008G103300 Sobic003G188500 Sobic003G188500 Sobic001G524400--Sobic003G188500 Sobic009G138700 Sobic009G138700 Sobic001G524400--Sobic009G138700 Sobic004G346100 Sobic004G346100 Sobic001G524400--Sobic004G346100 Sobic008G149800 Sobic008G149800 Sobic004G246100--Sobic008G149800 Sobic008G153000 Sobic008G153000 Sobic004G246100--Sobic008G153000 Sobic004G246100--Sobic007G061700 Sobic002G063900 Sobic002G063900 Sobic004G246100--Sobic002G063900 Sobic008G173100 Sobic008G173100 Sobic004G246100--Sobic008G173100 Sobic006G116100 Sobic006G116100 Sobic004G246100--Sobic006G116100 Sobic006G046700 Sobic006G046700 Sobic004G246100--Sobic006G046700 Sobic004G246100--Sobic009G137100 Sobic002G260400 Sobic002G260400 Sobic004G246100--Sobic002G260400 Sobic007G119200 Sobic007G119200 Sobic007G041500--Sobic007G119200 Sobic009G148300 Sobic009G148300 Sobic007G041500--Sobic009G148300 Sobic007G041500--Sobic010G034000 Sobic007G041500--Sobic008G153000 Sobic001G091400 Sobic001G091400 Sobic007G041500--Sobic001G091400 Sobic007G041500--Sobic004G246100 Sobic004G072100 Sobic004G072100 Sobic007G041500--Sobic004G072100 Sobic007G041500--Sobic010G116600 Sobic002G071500 Sobic002G071500 Sobic007G041500--Sobic002G071500 Sobic009G137100--Sobic004G246100 Sobic002G370900 Sobic002G370900 Sobic009G137100--Sobic002G370900 Sobic002G197100 Sobic002G197100 Sobic009G137100--Sobic002G197100 Sobic006G281700 Sobic006G281700 Sobic009G137100--Sobic006G281700 Sobic008G127400 Sobic008G127400 Sobic009G137100--Sobic008G127400 Sobic002G299100 Sobic002G299100 Sobic009G137100--Sobic002G299100 Sobic008G058800 Sobic008G058800 Sobic009G137100--Sobic008G058800 Sobic001G215400 Sobic001G215400 Sobic009G137100--Sobic001G215400 Sobic006G173100 Sobic006G173100 Sobic009G137100--Sobic006G173100 Sobic008G014500 Sobic008G014500 Sobic010G166400--Sobic008G014500 Sobic010G166400--Sobic010G116600 Sobic010G059500 Sobic010G059500 Sobic010G166400--Sobic010G059500 Sobic007G207200 Sobic007G207200 Sobic010G166400--Sobic007G207200 Sobic010G166400--Sobic003G093800 Sobic007G042400 Sobic007G042400 Sobic010G166400--Sobic007G042400 Sobic002G317200 Sobic002G317200 Sobic010G166400--Sobic002G317200 Sobic009G177500 Sobic009G177500 Sobic010G166400--Sobic009G177500 Sobic009G084900 Sobic009G084900 Sobic010G166400--Sobic009G084900 Sobic001G145400--Sobic006G086600 Sobic001G035200 Sobic001G035200 Sobic001G145400--Sobic001G035200 Sobic001G145400--Sobic010G059500 Sobic006G077200 Sobic006G077200 Sobic001G145400--Sobic006G077200 Sobic003G405500 Sobic003G405500 Sobic001G145400--Sobic003G405500 Sobic010G007100 Sobic010G007100 Sobic001G145400--Sobic010G007100 Sobic004G340400 Sobic004G340400 Sobic001G145400--Sobic004G340400 Sobic001G145400--Sobic009G084900 Sobic004G085000 Sobic004G085000 Sobic001G145400--Sobic004G085000
Octagon: transcription factors


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