Gene annotation
Transcriptome id Sobic.001G509500.1
Synonym Sb01g047560
Functional annotation glutamyl-tRNA synthetase, cytoplasmic, putative, expressed
UniProt C5WYW2
Pfam PF14497 PF03950 PF00749
Panther DB PTHR11451 PTHR11451:SF37
NCBI CDD -
KEGG Orthology K01885; EARS, glutamyl-tRNA synthetase
Gene Ontology GO:0006418; tRNA aminoacylation for protein translation GO:0005737cytoplasm GO:0005524ATP binding GO:0004812aminoacyl-tRNA ligase activity GO:0000166nucleotide binding GO:0016876aminoacyl-tRNA ligase activity


Orthologs (automatic annotation)
TAIR AT5G26710 : Glutamyl/glutaminyl-tRNA synthetase, class Ic
RAP-DB (Rice) LOC_Os10g22380.1 : glutamyl-tRNA synthetase, cytoplasmic, putative, expressed
MaizeGDB (Corn) Zm00025a053269 , Zm00025a053267 , Zm00025a053271 , Zm00025a053393 , Zm00025a000562
Brachypodium KQJ94813 , KQK03849
Barley HORVU1Hr1G078370.14 , HORVU1Hr1G078370.10 , HORVU1Hr1G078370.11 , HORVU1Hr1G078370.12 , HORVU1Hr1G078370.13 , HORVU3Hr1G038360.7 , HORVU3Hr1G038360.6 , HORVU3Hr1G038360.5 , HORVU3Hr1G038360.4 , HORVU3Hr1G038360.3 , HORVU3Hr1G038360.2 , HORVU3Hr1G038360.1 , HORVU3Hr1G038360.9 , HORVU3Hr1G038360.8 , HORVU3Hr1G038360.10 , HORVU1Hr1G078370.8 , HORVU1Hr1G078370.9 , HORVU1Hr1G078370.6 , HORVU1Hr1G078370.7 , HORVU1Hr1G078370.4 , HORVU1Hr1G078370.5 , HORVU1Hr1G078370.2 , HORVU1Hr1G078370.3 , HORVU1Hr1G078370.1
Wheat TraesCS3B02G215800 , TraesCS3D02G190200 , TraesCS1D02G345600 , TraesCS1B02G388100 , TraesCS1D02G375300 , TraesCS1D02G375300 , TraesCS1A02G343800 , TraesCS1A02G369400 , TraesCS3A02G186200 , TraesCS1B02G356800
Populus -


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cDNA sequences
Sobic.001G509500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G004300 KH domain containing protein, putative, expressed K13162: poly(rC)-binding protein 2
2 Sobic.008G098300 ubiquitin carboxyl-terminal hydrolase 26, putative, expressed K11858: ubiquitin carboxyl-terminal hydrolase 48
3 Sobic.006G182200 WD domain, G-beta repeat domain containing protein, expressed -
4 Sobic.003G188500 RWD domain containing protein, expressed -
5 Sobic.001G008200 expressed protein K13211: GC-rich sequence DNA-binding factor
6 Sobic.004G264400 TBC domain containing protein, expressed -
7 Sobic.009G056200 arginyl-tRNA synthetase, putative, expressed K01887: RARS, arginyl-tRNA synthetase
8 Sobic.004G048800 - K12599: SKI2, antiviral helicase SKI2
9 Sobic.006G200700 elongation factor Tu, putative, expressed K14416: elongation factor 1 alpha-like protein
10 Sobic.010G116600 FHA domain containing protein, putative, expressed -
11 Sobic.006G055300 RNA polymerase III RPC4 domain containing protein, expressed K03026: RPC4, DNA-directed RNA polymerase III subunit RPC4
12 Sobic.006G245400 -(PubMedID : 34525227)@NADPH reductase, putative, expressed K00327: NADPH-ferrihemoprotein reductase
13 Sobic.002G058400 disease resistance protein RPM1, putative, expressed K13457: RPM1, disease resistance protein RPM1
14 Sobic.007G172400 AAA-type ATPase family protein, putative, expressed K13338: peroxin-1
15 Sobic.004G135400 expressed protein -
16 Sobic.010G034000 zinc carboxypeptidase family protein, putative, expressed K07752: carboxypeptidase D
17 Sobic.002G071500 cleavage and polyadenylation specificity factor, putative, expressed K12830: SF3B3, SAP130, splicing factor 3B subunit 3
18 Sobic.001G263200 hydrolase, alpha/beta fold family domain containing protein, expressed -
19 Sobic.002G142900 immunoglobulin/major histocompatibility complex, putative, expressed K12607: CCR4-NOT transcription complex subunit 10
20 Sobic.004G274200 ara54-like RING finger protein, putative, expressed K11971: RNF14, E3 ubiquitin-protein ligase RNF14


Gene co-expression network
sample Sobic001G509500 Sobic001G509500 Sobic003G004300 Sobic003G004300 Sobic001G509500--Sobic003G004300 Sobic008G098300 Sobic008G098300 Sobic001G509500--Sobic008G098300 Sobic006G182200 Sobic006G182200 Sobic001G509500--Sobic006G182200 Sobic003G188500 Sobic003G188500 Sobic001G509500--Sobic003G188500 Sobic001G008200 Sobic001G008200 Sobic001G509500--Sobic001G008200 Sobic004G264400 Sobic004G264400 Sobic001G509500--Sobic004G264400 Sobic009G056200 Sobic009G056200 Sobic001G509500--Sobic009G056200 Sobic004G048800 Sobic004G048800 Sobic001G509500--Sobic004G048800 Sobic006G200700 Sobic006G200700 Sobic001G509500--Sobic006G200700 Sobic003G004300--Sobic001G509500 Sobic001G455800 Sobic001G455800 Sobic003G004300--Sobic001G455800 Sobic001G206500 Sobic001G206500 Sobic003G004300--Sobic001G206500 Sobic001G447300 Sobic001G447300 Sobic003G004300--Sobic001G447300 Sobic009G020500 Sobic009G020500 Sobic003G004300--Sobic009G020500 Sobic010G114900 Sobic010G114900 Sobic003G004300--Sobic010G114900 Sobic001G376900 Sobic001G376900 Sobic003G004300--Sobic001G376900 Sobic006G135900 Sobic006G135900 Sobic003G004300--Sobic006G135900 Sobic007G126500 Sobic007G126500 Sobic003G004300--Sobic007G126500 Sobic008G098300--Sobic004G048800 Sobic001G363500 Sobic001G363500 Sobic008G098300--Sobic001G363500 Sobic010G001100 Sobic010G001100 Sobic008G098300--Sobic010G001100 Sobic001G433800 Sobic001G433800 Sobic008G098300--Sobic001G433800 Sobic003G072200 Sobic003G072200 Sobic008G098300--Sobic003G072200 Sobic007G062800 Sobic007G062800 Sobic008G098300--Sobic007G062800 Sobic005G112300 Sobic005G112300 Sobic008G098300--Sobic005G112300 Sobic006G040500 Sobic006G040500 Sobic008G098300--Sobic006G040500 Sobic003G360400 Sobic003G360400 Sobic008G098300--Sobic003G360400 Sobic004G274200 Sobic004G274200 Sobic006G182200--Sobic004G274200 Sobic001G473600 Sobic001G473600 Sobic006G182200--Sobic001G473600 Sobic001G016000 Sobic001G016000 Sobic006G182200--Sobic001G016000 Sobic004G353000 Sobic004G353000 Sobic006G182200--Sobic004G353000 Sobic001G360200 Sobic001G360200 Sobic006G182200--Sobic001G360200 Sobic010G116600 Sobic010G116600 Sobic006G182200--Sobic010G116600 Sobic001G466700 Sobic001G466700 Sobic006G182200--Sobic001G466700 Sobic004G339100 Sobic004G339100 Sobic006G182200--Sobic004G339100 Sobic002G283600 Sobic002G283600 Sobic006G182200--Sobic002G283600 Sobic003G188500--Sobic001G509500 Sobic001G524400 Sobic001G524400 Sobic003G188500--Sobic001G524400 Sobic008G014500 Sobic008G014500 Sobic003G188500--Sobic008G014500 Sobic003G188500--Sobic006G182200 Sobic007G207200 Sobic007G207200 Sobic003G188500--Sobic007G207200 Sobic005G157100 Sobic005G157100 Sobic003G188500--Sobic005G157100 Sobic002G058400 Sobic002G058400 Sobic003G188500--Sobic002G058400 Sobic010G166400 Sobic010G166400 Sobic003G188500--Sobic010G166400 Sobic003G221600 Sobic003G221600 Sobic003G188500--Sobic003G221600 Sobic004G309900 Sobic004G309900 Sobic001G008200--Sobic004G309900 Sobic005G172500 Sobic005G172500 Sobic001G008200--Sobic005G172500 Sobic001G227400 Sobic001G227400 Sobic001G008200--Sobic001G227400 Sobic001G493200 Sobic001G493200 Sobic001G008200--Sobic001G493200 Sobic003G133900 Sobic003G133900 Sobic001G008200--Sobic003G133900 Sobic006G240100 Sobic006G240100 Sobic001G008200--Sobic006G240100 Sobic004G155600 Sobic004G155600 Sobic001G008200--Sobic004G155600 Sobic001G008200--Sobic001G473600 Sobic001G145400 Sobic001G145400 Sobic001G008200--Sobic001G145400 Sobic001G109800 Sobic001G109800 Sobic004G264400--Sobic001G109800 Sobic009G113000 Sobic009G113000 Sobic004G264400--Sobic009G113000 Sobic002G132000 Sobic002G132000 Sobic004G264400--Sobic002G132000 Sobic007G024700 Sobic007G024700 Sobic004G264400--Sobic007G024700 Sobic004G331100 Sobic004G331100 Sobic004G264400--Sobic004G331100 Sobic006G115600 Sobic006G115600 Sobic004G264400--Sobic006G115600 Sobic001G065000 Sobic001G065000 Sobic004G264400--Sobic001G065000 Sobic004G264400--Sobic004G274200 Sobic007G075400 Sobic007G075400 Sobic004G264400--Sobic007G075400 Sobic009G056200--Sobic005G172500 Sobic001G194200 Sobic001G194200 Sobic009G056200--Sobic001G194200 Sobic009G056200--Sobic001G227400 Sobic006G055200 Sobic006G055200 Sobic009G056200--Sobic006G055200 Sobic003G195000 Sobic003G195000 Sobic009G056200--Sobic003G195000 Sobic009G056200--Sobic007G207200 Sobic008G063300 Sobic008G063300 Sobic009G056200--Sobic008G063300 Sobic002G142900 Sobic002G142900 Sobic009G056200--Sobic002G142900 Sobic006G055300 Sobic006G055300 Sobic009G056200--Sobic006G055300 Sobic004G048800--Sobic008G098300 Sobic001G398800 Sobic001G398800 Sobic004G048800--Sobic001G398800 Sobic004G242400 Sobic004G242400 Sobic004G048800--Sobic004G242400 Sobic004G048800--Sobic010G001100 Sobic004G048800--Sobic003G360400 Sobic004G048800--Sobic001G363500 Sobic002G317200 Sobic002G317200 Sobic004G048800--Sobic002G317200 Sobic004G048800--Sobic001G433800 Sobic004G048800--Sobic005G112300 Sobic006G200700--Sobic004G353000 Sobic006G208500 Sobic006G208500 Sobic006G200700--Sobic006G208500 Sobic006G200700--Sobic008G014500 Sobic006G200700--Sobic010G116600 Sobic006G204800 Sobic006G204800 Sobic006G200700--Sobic006G204800 Sobic001G522600 Sobic001G522600 Sobic006G200700--Sobic001G522600 Sobic003G006400 Sobic003G006400 Sobic006G200700--Sobic003G006400 Sobic004G277200 Sobic004G277200 Sobic006G200700--Sobic004G277200 Sobic009G044800 Sobic009G044800 Sobic006G200700--Sobic009G044800
Octagon: transcription factors


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