Gene annotation
Transcriptome id Sobic.006G055300.1
Synonym Sb06g014360
Functional annotation RNA polymerase III RPC4 domain containing protein, expressed
UniProt C5YEW3
Pfam PF05132
Panther DB PTHR13408
NCBI CDD KOG3122; DNA-directed RNA polymerase III subunit
KEGG Orthology K03026; RPC4, DNA-directed RNA polymerase III subunit RPC4
Gene Ontology GO:0006383; transcription by RNA polymerase III GO:0005666RNA polymerase III complex GO:0003899DNA-directed 5'-3' RNA polymerase activity GO:0003677DNA binding


Orthologs (automatic annotation)
TAIR AT5G09380 : RNA polymerase III RPC4
RAP-DB (Rice) LOC_Os04g32350.1 : RNA polymerase III RPC4 domain containing protein, expressed
MaizeGDB (Corn) Zm00025a011703
Brachypodium -
Barley -
Wheat TraesCS1A02G097100
Populus -


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cDNA sequences
Sobic.006G055300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G056200 arginyl-tRNA synthetase, putative, expressed K01887: RARS, arginyl-tRNA synthetase
2 Sobic.001G455800 methionyl-tRNA synthetase, putative, expressed K01874: MARS, methionyl-tRNA synthetase
3 Sobic.001G509500 glutamyl-tRNA synthetase, cytoplasmic, putative, expressed K01885: EARS, glutamyl-tRNA synthetase
4 Sobic.001G103900 signal peptide peptidase domain containing protein, expressed -
5 Sobic.002G142900 immunoglobulin/major histocompatibility complex, putative, expressed K12607: CCR4-NOT transcription complex subunit 10
6 Sobic.007G071900 GTP-binding protein, putative, expressed K06942: ribosome-binding ATPase
7 Sobic.006G200700 elongation factor Tu, putative, expressed K14416: elongation factor 1 alpha-like protein
8 Sobic.007G009700 nucleic acid binding protein, putative, expressed K12839: SMNDC1, survival of motor neuron-related-splicing factor 30
9 Sobic.008G063300 exonuclease, putative, expressed K14570: REX1, REXO1, RNA exonuclease 1
10 Sobic.001G244300 GA19388-PA, putative, expressed K10768: alkylated DNA repair protein alkB homolog 6
11 Sobic.002G059300 OsFBX181 - F-box domain containing protein, expressed -
12 Sobic.001G259000 initiation factor 2 subunit family domain containing protein, expressed K03754: translation initiation factor eIF-2B subunit beta
13 Sobic.009G201700 oligosaccharyl transferase, putative, expressed K07151: dolichyl-diphosphooligosaccharide---protein glycosyltransferase
14 Sobic.005G172500 WD repeat-containing protein, putative, expressed K08266: MLST8, target of rapamycin complex subunit LST8
15 Sobic.004G033600 expressed protein -
16 Sobic.001G008200 expressed protein K13211: GC-rich sequence DNA-binding factor
17 Sobic.001G373900 MYB family transcription factor, putative, expressed -
18 Sobic.002G359400 transporter-related, putative, expressed K15285: solute carrier family 35, member E3
19 Sobic.004G131300 expressed protein K12617: PATL1, DNA topoisomerase 2-associated protein PAT1
20 Sobic.006G196300 glycosyl transferase, group 1 domain containing protein, expressed K03843: alpha-1,3/alpha-1,6-mannosyltransferase


Gene co-expression network
sample Sobic006G055300 Sobic006G055300 Sobic009G056200 Sobic009G056200 Sobic006G055300--Sobic009G056200 Sobic001G455800 Sobic001G455800 Sobic006G055300--Sobic001G455800 Sobic001G509500 Sobic001G509500 Sobic006G055300--Sobic001G509500 Sobic001G103900 Sobic001G103900 Sobic006G055300--Sobic001G103900 Sobic002G142900 Sobic002G142900 Sobic006G055300--Sobic002G142900 Sobic007G071900 Sobic007G071900 Sobic006G055300--Sobic007G071900 Sobic006G200700 Sobic006G200700 Sobic006G055300--Sobic006G200700 Sobic007G009700 Sobic007G009700 Sobic006G055300--Sobic007G009700 Sobic008G063300 Sobic008G063300 Sobic006G055300--Sobic008G063300 Sobic005G172500 Sobic005G172500 Sobic009G056200--Sobic005G172500 Sobic001G194200 Sobic001G194200 Sobic009G056200--Sobic001G194200 Sobic001G227400 Sobic001G227400 Sobic009G056200--Sobic001G227400 Sobic006G055200 Sobic006G055200 Sobic009G056200--Sobic006G055200 Sobic003G195000 Sobic003G195000 Sobic009G056200--Sobic003G195000 Sobic007G207200 Sobic007G207200 Sobic009G056200--Sobic007G207200 Sobic009G056200--Sobic008G063300 Sobic009G056200--Sobic002G142900 Sobic009G056200--Sobic006G055300 Sobic009G016400 Sobic009G016400 Sobic001G455800--Sobic009G016400 Sobic002G150700 Sobic002G150700 Sobic001G455800--Sobic002G150700 Sobic006G196300 Sobic006G196300 Sobic001G455800--Sobic006G196300 Sobic004G340400 Sobic004G340400 Sobic001G455800--Sobic004G340400 Sobic002G371700 Sobic002G371700 Sobic001G455800--Sobic002G371700 Sobic001G447300 Sobic001G447300 Sobic001G455800--Sobic001G447300 Sobic001G455800--Sobic002G142900 Sobic008G160000 Sobic008G160000 Sobic001G455800--Sobic008G160000 Sobic001G145400 Sobic001G145400 Sobic001G455800--Sobic001G145400 Sobic003G004300 Sobic003G004300 Sobic001G509500--Sobic003G004300 Sobic008G098300 Sobic008G098300 Sobic001G509500--Sobic008G098300 Sobic006G182200 Sobic006G182200 Sobic001G509500--Sobic006G182200 Sobic003G188500 Sobic003G188500 Sobic001G509500--Sobic003G188500 Sobic001G008200 Sobic001G008200 Sobic001G509500--Sobic001G008200 Sobic004G264400 Sobic004G264400 Sobic001G509500--Sobic004G264400 Sobic001G509500--Sobic009G056200 Sobic004G048800 Sobic004G048800 Sobic001G509500--Sobic004G048800 Sobic001G509500--Sobic006G200700 Sobic003G312200 Sobic003G312200 Sobic001G103900--Sobic003G312200 Sobic008G103300 Sobic008G103300 Sobic001G103900--Sobic008G103300 Sobic008G055900 Sobic008G055900 Sobic001G103900--Sobic008G055900 Sobic006G034500 Sobic006G034500 Sobic001G103900--Sobic006G034500 Sobic003G046300 Sobic003G046300 Sobic001G103900--Sobic003G046300 Sobic006G044600 Sobic006G044600 Sobic001G103900--Sobic006G044600 Sobic001G103900--Sobic006G055300 Sobic002G300700 Sobic002G300700 Sobic001G103900--Sobic002G300700 Sobic001G091300 Sobic001G091300 Sobic001G103900--Sobic001G091300 Sobic004G131300 Sobic004G131300 Sobic002G142900--Sobic004G131300 Sobic001G263600 Sobic001G263600 Sobic002G142900--Sobic001G263600 Sobic002G133300 Sobic002G133300 Sobic002G142900--Sobic002G133300 Sobic002G142900--Sobic003G195000 Sobic007G054800 Sobic007G054800 Sobic002G142900--Sobic007G054800 Sobic005G162500 Sobic005G162500 Sobic002G142900--Sobic005G162500 Sobic003G104000 Sobic003G104000 Sobic002G142900--Sobic003G104000 Sobic002G256700 Sobic002G256700 Sobic002G142900--Sobic002G256700 Sobic002G335600 Sobic002G335600 Sobic002G142900--Sobic002G335600 Sobic002G231500 Sobic002G231500 Sobic007G071900--Sobic002G231500 Sobic009G075800 Sobic009G075800 Sobic007G071900--Sobic009G075800 Sobic001G434200 Sobic001G434200 Sobic007G071900--Sobic001G434200 Sobic007G071900--Sobic001G455800 Sobic002G020700 Sobic002G020700 Sobic007G071900--Sobic002G020700 Sobic004G257100 Sobic004G257100 Sobic007G071900--Sobic004G257100 Sobic001G333100 Sobic001G333100 Sobic007G071900--Sobic001G333100 Sobic003G221400 Sobic003G221400 Sobic007G071900--Sobic003G221400 Sobic003G375200 Sobic003G375200 Sobic007G071900--Sobic003G375200 Sobic004G353000 Sobic004G353000 Sobic006G200700--Sobic004G353000 Sobic006G208500 Sobic006G208500 Sobic006G200700--Sobic006G208500 Sobic008G014500 Sobic008G014500 Sobic006G200700--Sobic008G014500 Sobic010G116600 Sobic010G116600 Sobic006G200700--Sobic010G116600 Sobic006G204800 Sobic006G204800 Sobic006G200700--Sobic006G204800 Sobic001G522600 Sobic001G522600 Sobic006G200700--Sobic001G522600 Sobic003G006400 Sobic003G006400 Sobic006G200700--Sobic003G006400 Sobic004G277200 Sobic004G277200 Sobic006G200700--Sobic004G277200 Sobic009G044800 Sobic009G044800 Sobic006G200700--Sobic009G044800 Sobic007G009700--Sobic009G044800 Sobic001G088100 Sobic001G088100 Sobic007G009700--Sobic001G088100 Sobic007G009700--Sobic001G227400 Sobic001G473600 Sobic001G473600 Sobic007G009700--Sobic001G473600 Sobic006G096900 Sobic006G096900 Sobic007G009700--Sobic006G096900 Sobic003G360400 Sobic003G360400 Sobic007G009700--Sobic003G360400 Sobic003G352200 Sobic003G352200 Sobic007G009700--Sobic003G352200 Sobic001G025000 Sobic001G025000 Sobic007G009700--Sobic001G025000 Sobic003G379200 Sobic003G379200 Sobic007G009700--Sobic003G379200 Sobic004G140600 Sobic004G140600 Sobic008G063300--Sobic004G140600 Sobic001G433800 Sobic001G433800 Sobic008G063300--Sobic001G433800 Sobic008G063300--Sobic006G096900 Sobic008G063300--Sobic003G360400 Sobic003G095900 Sobic003G095900 Sobic008G063300--Sobic003G095900 Sobic010G123600 Sobic010G123600 Sobic008G063300--Sobic010G123600 Sobic003G188400 Sobic003G188400 Sobic008G063300--Sobic003G188400 Sobic009G177500 Sobic009G177500 Sobic008G063300--Sobic009G177500 Sobic010G059500 Sobic010G059500 Sobic008G063300--Sobic010G059500
Octagon: transcription factors


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