Gene annotation
Transcriptome id Sobic.001G455800.1
Synonym Sb01g042830
Functional annotation methionyl-tRNA synthetase, putative, expressed
UniProt A0A1B6QR57
Pfam PF01588 PF09334
Panther DB PTHR11946 PTHR11946:SF78
NCBI CDD -
KEGG Orthology K01874; MARS, methionyl-tRNA synthetase
Gene Ontology GO:0000049; tRNA binding GO:0006418tRNA aminoacylation for protein translation GO:0005524ATP binding GO:0004812aminoacyl-tRNA ligase activity GO:0000166nucleotide binding


Orthologs (automatic annotation)
TAIR AT4G13780 : methionine--tRNA ligase, putative / methionyl-tRNA synthetase, putative / MetRS, putative
RAP-DB (Rice) LOC_Os06g31210.1 : methionyl-tRNA synthetase, putative, expressed
MaizeGDB (Corn) Zm00025a001299 , Zm00025a053063 , Zm00025a032634
Brachypodium KQK22882
Barley HORVU4Hr1G067650.1 , HORVU4Hr1G067650.2 , HORVU4Hr1G067650.4 , HORVU5Hr1G018330.1 , HORVU5Hr1G018330.2 , HORVU4Hr1G067650.3 , HORVU0Hr1G011560.1 , HORVU0Hr1G011560.3 , HORVU0Hr1G011560.2 , HORVU0Hr1G011560.5 , HORVU0Hr1G011560.4
Wheat TraesCS5B02G075700 , TraesCS5B02G075700 , TraesCS4A02G078800 , TraesCS4A02G078800 , TraesCS5D02G081600 , TraesCS5D02G081600 , TraesCS4D02G243900 , TraesCS5A02G069400 , TraesCS5A02G069400 , TraesCS4B02G245500 , TraesCS4B02G245500
Populus PNS95441 , PNS95440 , PNS95442 , PNT57727 , PNT57726 , PNT57725 , PNT57729 , PNT57728 , PNS95438 , PNS95439


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cDNA sequences
Sobic.001G455800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G016400 RNA recognition motif containing protein, expressed -
2 Sobic.002G150700 polyadenylate-binding protein, putative, expressed K13126: polyadenylate-binding protein
3 Sobic.006G196300 glycosyl transferase, group 1 domain containing protein, expressed K03843: alpha-1,3/alpha-1,6-mannosyltransferase
4 Sobic.004G340400 translation initiation factor eIF-2B subunit epsilon, putative, expressed K03240: translation initiation factor eIF-2B subunit epsilon
5 Sobic.002G371700 signal recognition particle 68 kDa protein, putative, expressed K03107: signal recognition particle subunit SRP68
6 Sobic.001G447300 ATP-binding cassette sub-family E member 1, putative, expressed K06174: ABCE1, ATP-binding cassette, sub-family E, member 1
7 Sobic.002G142900 immunoglobulin/major histocompatibility complex, putative, expressed K12607: CCR4-NOT transcription complex subunit 10
8 Sobic.008G160000 tetratricopeptide repeat domain containing protein, expressed -
9 Sobic.001G145400 threonyl-tRNA synthetase, mitochondrial precursor, putative, expressed K01868: TARS, threonyl-tRNA synthetase
10 Sobic.004G145000 importin-8, putative, expressed -
11 Sobic.003G046300 ubiquitin carboxyl-terminal hydrolase 14, putative, expressed K11836: USP5_13, ubiquitin carboxyl-terminal hydrolase 5/13
12 Sobic.002G246700 eukaryotic translation initiation factor 3 subunit C, putative, expressed K03252: translation initiation factor 3 subunit C
13 Sobic.003G289500 selenium-binding protein, related, putative, expressed -
14 Sobic.004G053500 HEAT repeat family protein, putative, expressed K17263: CAND1, cullin-associated NEDD8-dissociated protein 1
15 Sobic.010G206300 tRNA synthetase class I, putative, expressed K01870: IARS, isoleucyl-tRNA synthetase
16 Sobic.009G234700 protein of unknown function DUF1296 domain containing protein, expressed -
17 Sobic.007G071900 GTP-binding protein, putative, expressed K06942: ribosome-binding ATPase
18 Sobic.008G103300 vacuolar protein sorting-associated protein 26, putative, expressed K18466: vacuolar protein sorting-associated protein 26
19 Sobic.008G055900 transmembrane 9 superfamily member, putative, expressed K17087: transmembrane 9 superfamily member 3
20 Sobic.003G132000 proteasome subunit, putative, expressed K12176: COPS2, CSN2, COP9 signalosome complex subunit 2


Gene co-expression network
sample Sobic001G455800 Sobic001G455800 Sobic009G016400 Sobic009G016400 Sobic001G455800--Sobic009G016400 Sobic002G150700 Sobic002G150700 Sobic001G455800--Sobic002G150700 Sobic006G196300 Sobic006G196300 Sobic001G455800--Sobic006G196300 Sobic004G340400 Sobic004G340400 Sobic001G455800--Sobic004G340400 Sobic002G371700 Sobic002G371700 Sobic001G455800--Sobic002G371700 Sobic001G447300 Sobic001G447300 Sobic001G455800--Sobic001G447300 Sobic002G142900 Sobic002G142900 Sobic001G455800--Sobic002G142900 Sobic008G160000 Sobic008G160000 Sobic001G455800--Sobic008G160000 Sobic001G145400 Sobic001G145400 Sobic001G455800--Sobic001G145400 Sobic009G016400--Sobic001G455800 Sobic009G016400--Sobic004G340400 Sobic009G016400--Sobic008G160000 Sobic004G320500 Sobic004G320500 Sobic009G016400--Sobic004G320500 Sobic001G052400 Sobic001G052400 Sobic009G016400--Sobic001G052400 Sobic002G256700 Sobic002G256700 Sobic009G016400--Sobic002G256700 Sobic004G145000 Sobic004G145000 Sobic009G016400--Sobic004G145000 Sobic009G046100 Sobic009G046100 Sobic009G016400--Sobic009G046100 Sobic001G401500 Sobic001G401500 Sobic009G016400--Sobic001G401500 Sobic002G408900 Sobic002G408900 Sobic002G150700--Sobic002G408900 Sobic006G002800 Sobic006G002800 Sobic002G150700--Sobic006G002800 Sobic002G150700--Sobic001G455800 Sobic003G146600 Sobic003G146600 Sobic002G150700--Sobic003G146600 Sobic001G099900 Sobic001G099900 Sobic002G150700--Sobic001G099900 Sobic004G208500 Sobic004G208500 Sobic002G150700--Sobic004G208500 Sobic002G398700 Sobic002G398700 Sobic002G150700--Sobic002G398700 Sobic002G150700--Sobic001G145400 Sobic003G304400 Sobic003G304400 Sobic002G150700--Sobic003G304400 Sobic003G264100 Sobic003G264100 Sobic006G196300--Sobic003G264100 Sobic002G405400 Sobic002G405400 Sobic006G196300--Sobic002G405400 Sobic006G196300--Sobic001G455800 Sobic006G196300--Sobic002G142900 Sobic010G020400 Sobic010G020400 Sobic006G196300--Sobic010G020400 Sobic001G333100 Sobic001G333100 Sobic006G196300--Sobic001G333100 Sobic001G227400 Sobic001G227400 Sobic006G196300--Sobic001G227400 Sobic004G241900 Sobic004G241900 Sobic006G196300--Sobic004G241900 Sobic002G303600 Sobic002G303600 Sobic006G196300--Sobic002G303600 Sobic004G340400--Sobic001G145400 Sobic001G291800 Sobic001G291800 Sobic004G340400--Sobic001G291800 Sobic004G340400--Sobic004G320500 Sobic010G007100 Sobic010G007100 Sobic004G340400--Sobic010G007100 Sobic004G340400--Sobic008G160000 Sobic004G340400--Sobic001G052400 Sobic004G340400--Sobic001G455800 Sobic004G340400--Sobic004G145000 Sobic004G340400--Sobic001G401500 Sobic008G103300 Sobic008G103300 Sobic002G371700--Sobic008G103300 Sobic004G053500 Sobic004G053500 Sobic002G371700--Sobic004G053500 Sobic010G059500 Sobic010G059500 Sobic002G371700--Sobic010G059500 Sobic002G371700--Sobic002G142900 Sobic004G131300 Sobic004G131300 Sobic002G371700--Sobic004G131300 Sobic002G401500 Sobic002G401500 Sobic002G371700--Sobic002G401500 Sobic005G110499 Sobic005G110499 Sobic002G371700--Sobic005G110499 Sobic001G087600 Sobic001G087600 Sobic002G371700--Sobic001G087600 Sobic003G363700 Sobic003G363700 Sobic002G371700--Sobic003G363700 Sobic006G136400 Sobic006G136400 Sobic001G447300--Sobic006G136400 Sobic008G055900 Sobic008G055900 Sobic001G447300--Sobic008G055900 Sobic008G099800 Sobic008G099800 Sobic001G447300--Sobic008G099800 Sobic006G166200 Sobic006G166200 Sobic001G447300--Sobic006G166200 Sobic001G447300--Sobic001G455800 Sobic001G447300--Sobic004G145000 Sobic001G447300--Sobic002G371700 Sobic001G447300--Sobic004G053500 Sobic004G353000 Sobic004G353000 Sobic001G447300--Sobic004G353000 Sobic002G142900--Sobic004G131300 Sobic001G263600 Sobic001G263600 Sobic002G142900--Sobic001G263600 Sobic002G133300 Sobic002G133300 Sobic002G142900--Sobic002G133300 Sobic003G195000 Sobic003G195000 Sobic002G142900--Sobic003G195000 Sobic007G054800 Sobic007G054800 Sobic002G142900--Sobic007G054800 Sobic005G162500 Sobic005G162500 Sobic002G142900--Sobic005G162500 Sobic003G104000 Sobic003G104000 Sobic002G142900--Sobic003G104000 Sobic002G142900--Sobic002G256700 Sobic002G335600 Sobic002G335600 Sobic002G142900--Sobic002G335600 Sobic008G160000--Sobic004G340400 Sobic008G160000--Sobic001G455800 Sobic001G259000 Sobic001G259000 Sobic008G160000--Sobic001G259000 Sobic009G138700 Sobic009G138700 Sobic008G160000--Sobic009G138700 Sobic008G160000--Sobic002G150700 Sobic008G160000--Sobic009G016400 Sobic008G160000--Sobic001G145400 Sobic008G160000--Sobic006G002800 Sobic004G224600 Sobic004G224600 Sobic008G160000--Sobic004G224600 Sobic006G086600 Sobic006G086600 Sobic001G145400--Sobic006G086600 Sobic001G035200 Sobic001G035200 Sobic001G145400--Sobic001G035200 Sobic001G145400--Sobic010G059500 Sobic006G077200 Sobic006G077200 Sobic001G145400--Sobic006G077200 Sobic003G405500 Sobic003G405500 Sobic001G145400--Sobic003G405500 Sobic001G145400--Sobic010G007100 Sobic001G145400--Sobic004G340400 Sobic009G084900 Sobic009G084900 Sobic001G145400--Sobic009G084900 Sobic004G085000 Sobic004G085000 Sobic001G145400--Sobic004G085000
Octagon: transcription factors


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