Gene annotation
Transcriptome id Sobic.010G206300.1
Synonym Sb10g025350
Functional annotation tRNA synthetase class I, putative, expressed
UniProt A0A1W0VU35
Pfam PF08264 PF00133
Panther DB PTHR11946 PTHR11946:SF73
NCBI CDD -
KEGG Orthology K01870; IARS, isoleucyl-tRNA synthetase
Gene Ontology GO:0006418; tRNA aminoacylation for protein translation GO:0000166nucleotide binding GO:0005524ATP binding GO:0004812aminoacyl-tRNA ligase activity


Orthologs (automatic annotation)
TAIR AT4G10320 : tRNA synthetase class I (I, L, M and V) family protein
RAP-DB (Rice) LOC_Os06g43760.1 : tRNA synthetase class I, putative, expressed
MaizeGDB (Corn) Zm00025a042065 , Zm00025a051375
Brachypodium KQK16788
Barley HORVU7Hr1G115280.6 , HORVU7Hr1G115280.5 , HORVU7Hr1G115280.8 , HORVU7Hr1G115280.11 , HORVU7Hr1G115280.12 , HORVU7Hr1G115280.13 , HORVU7Hr1G115280.14 , HORVU7Hr1G115280.15 , HORVU7Hr1G115280.16 , HORVU7Hr1G115280.17 , HORVU7Hr1G115280.18 , HORVU7Hr1G115280.19 , HORVU7Hr1G115280.20 , HORVU7Hr1G115280.2 , HORVU7Hr1G115280.3
Wheat TraesCS7B02G432400 , TraesCS7B02G432400 , TraesCS5A02G467900 , TraesCS7A02G516000 , TraesCS7A02G516000 , TraesCS7D02G506300 , TraesCS7D02G506300 , TraesCS7D02G506300 , TraesCS7D02G506300 , TraesCS7A02G516000
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G082500 alanyl-tRNA synthetase, putative, expressed K01872: AARS, alanyl-tRNA synthetase
2 Sobic.001G145400 threonyl-tRNA synthetase, mitochondrial precursor, putative, expressed K01868: TARS, threonyl-tRNA synthetase
3 Sobic.007G054800 valyl-tRNA synthetase, putative, expressed K01873: VARS, valyl-tRNA synthetase
4 Sobic.003G405500 mannosyl-oligosaccharide glucosidase, putative, expressed K01228: mannosyl-oligosaccharide glucosidase
5 Sobic.009G084900 expressed protein -
6 Sobic.001G455800 methionyl-tRNA synthetase, putative, expressed K01874: MARS, methionyl-tRNA synthetase
7 Sobic.001G058200 PPR repeat domain containing protein, putative, expressed -
8 Sobic.009G201700 oligosaccharyl transferase, putative, expressed K07151: dolichyl-diphosphooligosaccharide---protein glycosyltransferase
9 Sobic.001G110600 HEAT repeat family protein, putative, expressed -
10 Sobic.004G340400 translation initiation factor eIF-2B subunit epsilon, putative, expressed K03240: translation initiation factor eIF-2B subunit epsilon
11 Sobic.006G077200 ubiquitin interaction motif-containing protein, putative, expressed -
12 Sobic.009G046100 phenylalanyl-tRNA synthetase beta chain, putative, expressed K01890: FARSB, phenylalanyl-tRNA synthetase beta chain
13 Sobic.002G020700 WD domain, G-beta repeat domain containing protein, expressed K14018: PLAA, DOA1, phospholipase A-2-activating protein
14 Sobic.004G256500 WD domain, G-beta repeat domain containing protein, expressed K12616: enhancer of mRNA-decapping protein 4
15 Sobic.004G023100 protein binding protein, putative, expressed -
16 Sobic.001G291800 eukaryotic translation initiation factor 3 subunit B, putative, expressed K03253: translation initiation factor 3 subunit B
17 Sobic.007G207200 phenylalanyl-tRNA synthetase beta chain, putative, expressed K01890: FARSB, phenylalanyl-tRNA synthetase beta chain
18 Sobic.001G493700 ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed -
19 Sobic.010G059500 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K12818: DHX8, ATP-dependent RNA helicase DHX8/PRP22
20 Sobic.004G131300 expressed protein K12617: PATL1, DNA topoisomerase 2-associated protein PAT1


Gene co-expression network
sample Sobic010G206300 Sobic010G206300 Sobic008G082500 Sobic008G082500 Sobic010G206300--Sobic008G082500 Sobic001G145400 Sobic001G145400 Sobic010G206300--Sobic001G145400 Sobic007G054800 Sobic007G054800 Sobic010G206300--Sobic007G054800 Sobic003G405500 Sobic003G405500 Sobic010G206300--Sobic003G405500 Sobic009G084900 Sobic009G084900 Sobic010G206300--Sobic009G084900 Sobic001G455800 Sobic001G455800 Sobic010G206300--Sobic001G455800 Sobic001G058200 Sobic001G058200 Sobic010G206300--Sobic001G058200 Sobic009G201700 Sobic009G201700 Sobic010G206300--Sobic009G201700 Sobic001G110600 Sobic001G110600 Sobic010G206300--Sobic001G110600 Sobic008G082500--Sobic009G084900 Sobic010G185400 Sobic010G185400 Sobic008G082500--Sobic010G185400 Sobic008G082500--Sobic010G206300 Sobic006G077200 Sobic006G077200 Sobic008G082500--Sobic006G077200 Sobic010G059500 Sobic010G059500 Sobic008G082500--Sobic010G059500 Sobic001G493200 Sobic001G493200 Sobic008G082500--Sobic001G493200 Sobic002G020700 Sobic002G020700 Sobic008G082500--Sobic002G020700 Sobic008G082500--Sobic001G145400 Sobic004G023100 Sobic004G023100 Sobic008G082500--Sobic004G023100 Sobic006G086600 Sobic006G086600 Sobic001G145400--Sobic006G086600 Sobic001G035200 Sobic001G035200 Sobic001G145400--Sobic001G035200 Sobic001G145400--Sobic010G059500 Sobic001G145400--Sobic006G077200 Sobic001G145400--Sobic003G405500 Sobic010G007100 Sobic010G007100 Sobic001G145400--Sobic010G007100 Sobic004G340400 Sobic004G340400 Sobic001G145400--Sobic004G340400 Sobic001G145400--Sobic009G084900 Sobic004G085000 Sobic004G085000 Sobic001G145400--Sobic004G085000 Sobic003G221400 Sobic003G221400 Sobic007G054800--Sobic003G221400 Sobic007G054800--Sobic001G110600 Sobic001G004400 Sobic001G004400 Sobic007G054800--Sobic001G004400 Sobic005G162500 Sobic005G162500 Sobic007G054800--Sobic005G162500 Sobic006G280000 Sobic006G280000 Sobic007G054800--Sobic006G280000 Sobic002G256700 Sobic002G256700 Sobic007G054800--Sobic002G256700 Sobic002G133300 Sobic002G133300 Sobic007G054800--Sobic002G133300 Sobic002G142900 Sobic002G142900 Sobic007G054800--Sobic002G142900 Sobic004G131300 Sobic004G131300 Sobic007G054800--Sobic004G131300 Sobic003G405500--Sobic001G145400 Sobic008G124800 Sobic008G124800 Sobic003G405500--Sobic008G124800 Sobic002G430300 Sobic002G430300 Sobic003G405500--Sobic002G430300 Sobic003G405500--Sobic009G084900 Sobic006G166200 Sobic006G166200 Sobic003G405500--Sobic006G166200 Sobic004G141800 Sobic004G141800 Sobic003G405500--Sobic004G141800 Sobic003G405500--Sobic006G077200 Sobic003G405500--Sobic010G059500 Sobic003G314700 Sobic003G314700 Sobic003G405500--Sobic003G314700 Sobic009G084900--Sobic010G059500 Sobic003G072200 Sobic003G072200 Sobic009G084900--Sobic003G072200 Sobic009G084900--Sobic001G493200 Sobic001G433800 Sobic001G433800 Sobic009G084900--Sobic001G433800 Sobic009G131300 Sobic009G131300 Sobic009G084900--Sobic009G131300 Sobic009G084900--Sobic002G133300 Sobic009G084900--Sobic006G077200 Sobic009G084900--Sobic008G082500 Sobic004G260100 Sobic004G260100 Sobic009G084900--Sobic004G260100 Sobic009G016400 Sobic009G016400 Sobic001G455800--Sobic009G016400 Sobic002G150700 Sobic002G150700 Sobic001G455800--Sobic002G150700 Sobic006G196300 Sobic006G196300 Sobic001G455800--Sobic006G196300 Sobic001G455800--Sobic004G340400 Sobic002G371700 Sobic002G371700 Sobic001G455800--Sobic002G371700 Sobic001G447300 Sobic001G447300 Sobic001G455800--Sobic001G447300 Sobic001G455800--Sobic002G142900 Sobic008G160000 Sobic008G160000 Sobic001G455800--Sobic008G160000 Sobic001G455800--Sobic001G145400 Sobic001G151100 Sobic001G151100 Sobic001G058200--Sobic001G151100 Sobic001G058200--Sobic005G162500 Sobic001G542400 Sobic001G542400 Sobic001G058200--Sobic001G542400 Sobic001G058200--Sobic002G133300 Sobic001G058200--Sobic008G082500 Sobic001G058200--Sobic004G131300 Sobic004G248600 Sobic004G248600 Sobic001G058200--Sobic004G248600 Sobic003G214600 Sobic003G214600 Sobic001G058200--Sobic003G214600 Sobic001G087600 Sobic001G087600 Sobic001G058200--Sobic001G087600 Sobic009G201700--Sobic009G131300 Sobic009G201700--Sobic007G054800 Sobic006G103200 Sobic006G103200 Sobic009G201700--Sobic006G103200 Sobic004G030900 Sobic004G030900 Sobic009G201700--Sobic004G030900 Sobic004G277200 Sobic004G277200 Sobic009G201700--Sobic004G277200 Sobic009G201700--Sobic010G059500 Sobic009G201700--Sobic006G166200 Sobic009G201700--Sobic009G084900 Sobic002G429300 Sobic002G429300 Sobic009G201700--Sobic002G429300 Sobic001G110600--Sobic007G054800 Sobic001G110600--Sobic001G004400 Sobic001G110600--Sobic003G221400 Sobic001G493700 Sobic001G493700 Sobic001G110600--Sobic001G493700 Sobic001G191700 Sobic001G191700 Sobic001G110600--Sobic001G191700 Sobic001G110600--Sobic005G162500 Sobic003G233400 Sobic003G233400 Sobic001G110600--Sobic003G233400 Sobic008G085300 Sobic008G085300 Sobic001G110600--Sobic008G085300 Sobic001G287500 Sobic001G287500 Sobic001G110600--Sobic001G287500
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.