Gene annotation
Transcriptome id Sobic.001G058200.4,Sobic.001G058200.3,Sobic.001G058200.6,Sobic.001G058200.5
Synonym Sb01g005290
Functional annotation PPR repeat domain containing protein, putative, expressed
UniProt A0A1B6QHH8
Pfam PF01535 PF13041
Panther DB PTHR24015 PTHR24015:SF804
NCBI CDD KOG1840; Kinesin light chain
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G22470 : Pentatricopeptide repeat (PPR) superfamily protein
RAP-DB (Rice) LOC_Os03g58120.1 : PPR repeat domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a008552
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G151100 CCR4-NOT transcription factor, putative, expressed K12580: CNOT3, CCR4-NOT transcription complex subunit 3
2 Sobic.005G162500 ubiquitin carboxyl-terminal hydrolase, putative, expressed K11838: USP7, ubiquitin carboxyl-terminal hydrolase 7
3 Sobic.001G542400 CCR4-Not complex component, Not1domain containing protein, expressed K12604: CNOT1, CCR4-NOT transcription complex subunit 1
4 Sobic.002G133300 ZOS9-20 - C2H2 zinc finger protein, expressed K14400: pre-mRNA cleavage complex 2 protein Pcf11
5 Sobic.008G082500 alanyl-tRNA synthetase, putative, expressed K01872: AARS, alanyl-tRNA synthetase
6 Sobic.004G131300 expressed protein K12617: PATL1, DNA topoisomerase 2-associated protein PAT1
7 Sobic.004G248600 expressed protein K15166: mediator of RNA polymerase II transcription subunit 23
8 Sobic.003G214600 transcriptional corepressor LEUNIG, putative, expressed -
9 Sobic.001G087600 ZOS9-03 - C2H2 zinc finger protein, expressed -
10 Sobic.009G084900 expressed protein -
11 Sobic.001G004400 - K14290: XPO1, exportin-1
12 Sobic.004G256500 WD domain, G-beta repeat domain containing protein, expressed K12616: enhancer of mRNA-decapping protein 4
13 Sobic.001G275300 - K10899: ATP-dependent DNA helicase Q1
14 Sobic.001G493700 ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed -
15 Sobic.010G174700 expressed protein -
16 Sobic.010G105200 SYD, putative, expressed -
17 Sobic.007G054800 valyl-tRNA synthetase, putative, expressed K01873: VARS, valyl-tRNA synthetase
18 Sobic.005G172500 WD repeat-containing protein, putative, expressed K08266: MLST8, target of rapamycin complex subunit LST8
19 Sobic.001G191700 expressed protein -
20 Sobic.004G053500 HEAT repeat family protein, putative, expressed K17263: CAND1, cullin-associated NEDD8-dissociated protein 1


Gene co-expression network
sample Sobic001G058200 Sobic001G058200 Sobic001G151100 Sobic001G151100 Sobic001G058200--Sobic001G151100 Sobic005G162500 Sobic005G162500 Sobic001G058200--Sobic005G162500 Sobic001G542400 Sobic001G542400 Sobic001G058200--Sobic001G542400 Sobic002G133300 Sobic002G133300 Sobic001G058200--Sobic002G133300 Sobic008G082500 Sobic008G082500 Sobic001G058200--Sobic008G082500 Sobic004G131300 Sobic004G131300 Sobic001G058200--Sobic004G131300 Sobic004G248600 Sobic004G248600 Sobic001G058200--Sobic004G248600 Sobic003G214600 Sobic003G214600 Sobic001G058200--Sobic003G214600 Sobic001G087600 Sobic001G087600 Sobic001G058200--Sobic001G087600 Sobic001G151100--Sobic001G058200 Sobic001G433800 Sobic001G433800 Sobic001G151100--Sobic001G433800 Sobic005G167700 Sobic005G167700 Sobic001G151100--Sobic005G167700 Sobic001G151100--Sobic001G087600 Sobic002G308700 Sobic002G308700 Sobic001G151100--Sobic002G308700 Sobic001G151100--Sobic005G162500 Sobic001G151100--Sobic002G133300 Sobic001G151100--Sobic001G542400 Sobic001G151100--Sobic004G248600 Sobic001G493700 Sobic001G493700 Sobic005G162500--Sobic001G493700 Sobic002G429300 Sobic002G429300 Sobic005G162500--Sobic002G429300 Sobic001G370900 Sobic001G370900 Sobic005G162500--Sobic001G370900 Sobic009G131300 Sobic009G131300 Sobic005G162500--Sobic009G131300 Sobic008G088872 Sobic008G088872 Sobic005G162500--Sobic008G088872 Sobic003G186000 Sobic003G186000 Sobic005G162500--Sobic003G186000 Sobic008G098900 Sobic008G098900 Sobic005G162500--Sobic008G098900 Sobic004G276400 Sobic004G276400 Sobic005G162500--Sobic004G276400 Sobic002G335600 Sobic002G335600 Sobic005G162500--Sobic002G335600 Sobic001G299700 Sobic001G299700 Sobic001G542400--Sobic001G299700 Sobic009G109200 Sobic009G109200 Sobic001G542400--Sobic009G109200 Sobic001G400500 Sobic001G400500 Sobic001G542400--Sobic001G400500 Sobic009G256300 Sobic009G256300 Sobic001G542400--Sobic009G256300 Sobic010G112100 Sobic010G112100 Sobic001G542400--Sobic010G112100 Sobic001G542400--Sobic004G276400 Sobic010G105200 Sobic010G105200 Sobic001G542400--Sobic010G105200 Sobic005G008800 Sobic005G008800 Sobic001G542400--Sobic005G008800 Sobic008G001200 Sobic008G001200 Sobic001G542400--Sobic008G001200 Sobic002G133300--Sobic004G276400 Sobic002G133300--Sobic001G433800 Sobic001G004400 Sobic001G004400 Sobic002G133300--Sobic001G004400 Sobic001G289800 Sobic001G289800 Sobic002G133300--Sobic001G289800 Sobic003G072200 Sobic003G072200 Sobic002G133300--Sobic003G072200 Sobic002G397500 Sobic002G397500 Sobic002G133300--Sobic002G397500 Sobic002G133300--Sobic004G131300 Sobic001G194200 Sobic001G194200 Sobic002G133300--Sobic001G194200 Sobic002G133300--Sobic001G493700 Sobic009G084900 Sobic009G084900 Sobic008G082500--Sobic009G084900 Sobic010G185400 Sobic010G185400 Sobic008G082500--Sobic010G185400 Sobic010G206300 Sobic010G206300 Sobic008G082500--Sobic010G206300 Sobic006G077200 Sobic006G077200 Sobic008G082500--Sobic006G077200 Sobic010G059500 Sobic010G059500 Sobic008G082500--Sobic010G059500 Sobic001G493200 Sobic001G493200 Sobic008G082500--Sobic001G493200 Sobic002G020700 Sobic002G020700 Sobic008G082500--Sobic002G020700 Sobic001G145400 Sobic001G145400 Sobic008G082500--Sobic001G145400 Sobic004G023100 Sobic004G023100 Sobic008G082500--Sobic004G023100 Sobic004G131300--Sobic002G133300 Sobic002G142900 Sobic002G142900 Sobic004G131300--Sobic002G142900 Sobic005G172500 Sobic005G172500 Sobic004G131300--Sobic005G172500 Sobic004G131300--Sobic009G084900 Sobic004G256500 Sobic004G256500 Sobic004G131300--Sobic004G256500 Sobic004G131300--Sobic010G059500 Sobic007G054800 Sobic007G054800 Sobic004G131300--Sobic007G054800 Sobic006G136400 Sobic006G136400 Sobic004G131300--Sobic006G136400 Sobic002G256700 Sobic002G256700 Sobic004G131300--Sobic002G256700 Sobic004G248600--Sobic009G109200 Sobic004G248600--Sobic001G004400 Sobic004G248600--Sobic002G133300 Sobic004G248600--Sobic003G072200 Sobic003G312100 Sobic003G312100 Sobic004G248600--Sobic003G312100 Sobic004G248600--Sobic003G186000 Sobic004G248600--Sobic004G276400 Sobic004G248600--Sobic002G397500 Sobic004G248600--Sobic005G162500 Sobic005G200800 Sobic005G200800 Sobic003G214600--Sobic005G200800 Sobic002G029100 Sobic002G029100 Sobic003G214600--Sobic002G029100 Sobic006G088200 Sobic006G088200 Sobic003G214600--Sobic006G088200 Sobic003G408600 Sobic003G408600 Sobic003G214600--Sobic003G408600 Sobic009G255600 Sobic009G255600 Sobic003G214600--Sobic009G255600 Sobic003G214600--Sobic005G008800 Sobic007G183300 Sobic007G183300 Sobic003G214600--Sobic007G183300 Sobic007G163100 Sobic007G163100 Sobic003G214600--Sobic007G163100 Sobic003G360400 Sobic003G360400 Sobic003G214600--Sobic003G360400 Sobic001G087600--Sobic001G151100 Sobic001G461400 Sobic001G461400 Sobic001G087600--Sobic001G461400 Sobic001G020000 Sobic001G020000 Sobic001G087600--Sobic001G020000 Sobic002G145800 Sobic002G145800 Sobic001G087600--Sobic002G145800 Sobic002G154000 Sobic002G154000 Sobic001G087600--Sobic002G154000 Sobic003G416700 Sobic003G416700 Sobic001G087600--Sobic003G416700 Sobic002G430300 Sobic002G430300 Sobic001G087600--Sobic002G430300 Sobic001G087600--Sobic005G167700 Sobic002G371700 Sobic002G371700 Sobic001G087600--Sobic002G371700
Octagon: transcription factors


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