Gene annotation
Transcriptome id Sobic.005G172500.1
Synonym Sb05g023230
Functional annotation WD repeat-containing protein, putative, expressed
UniProt C5Y5G8
Pfam PF00400
Panther DB PTHR19842
NCBI CDD -
KEGG Orthology K08266; MLST8, target of rapamycin complex subunit LST8
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT3G18140 : Transducin/WD40 repeat-like superfamily protein
RAP-DB (Rice) LOC_Os03g47780.1 : WD repeat-containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a015838
Brachypodium KQK11533
Barley HORVU4Hr1G003940.2 , HORVU4Hr1G003940.3 , HORVU4Hr1G003940.1 , HORVU4Hr1G003940.6 , HORVU4Hr1G003940.7 , HORVU4Hr1G003940.4 , HORVU4Hr1G003940.5
Wheat TraesCS4D02G023600 , TraesCS4D02G023600 , TraesCS4B02G026200 , TraesCS4A02G288600
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G131300 expressed protein K12617: PATL1, DNA topoisomerase 2-associated protein PAT1
2 Sobic.006G148100 DUF647 domain containing protein, putative, expressed -
3 Sobic.009G056200 arginyl-tRNA synthetase, putative, expressed K01887: RARS, arginyl-tRNA synthetase
4 Sobic.001G493200 endonuclease/exonuclease/phosphatase family domain containing protein, expressed K12603: CNOT6, CCR4-NOT transcription complex subunit 6
5 Sobic.001G227400 WD domain, G-beta repeat domain containing protein, expressed -
6 Sobic.002G371300 peroxisome assembly protein, putative, expressed K13346: peroxin-10
7 Sobic.002G142900 immunoglobulin/major histocompatibility complex, putative, expressed K12607: CCR4-NOT transcription complex subunit 10
8 Sobic.003G408600 GYF domain containing protein, putative, expressed K18730: PERQ amino acid-rich with GYF domain-containing protein
9 Sobic.004G257100 transmembrane 9 superfamily member, putative, expressed -
10 Sobic.003G133900 exonuclease, putative, expressed K18417: ERI1 exoribonuclease 2
11 Sobic.002G133300 ZOS9-20 - C2H2 zinc finger protein, expressed K14400: pre-mRNA cleavage complex 2 protein Pcf11
12 Sobic.001G120500 toc64, putative, expressed -
13 Sobic.002G256700 ubiquitin carboxyl-terminal hydrolase family protein, expressed K11844: ubiquitin carboxyl-terminal hydrolase 16/45
14 Sobic.003G104000 expressed protein K15133: mediator of RNA polymerase II transcription subunit 17
15 Sobic.001G008200 expressed protein K13211: GC-rich sequence DNA-binding factor
16 Sobic.001G207000 KH domain containing protein, putative, expressed K13162: poly(rC)-binding protein 2
17 Sobic.006G088200 nonsense-mediated decay UPF3, putative, expressed K14328: UPF3, regulator of nonsense transcripts 3
18 Sobic.001G354600 SAP domain containing protein, expressed K12875: ACIN1, apoptotic chromatin condensation inducer in the nucleus
19 Sobic.002G045600 transcriptional corepressor SEUSS, putative, expressed -
20 Sobic.009G084900 expressed protein -


Gene co-expression network
sample Sobic005G172500 Sobic005G172500 Sobic004G131300 Sobic004G131300 Sobic005G172500--Sobic004G131300 Sobic006G148100 Sobic006G148100 Sobic005G172500--Sobic006G148100 Sobic009G056200 Sobic009G056200 Sobic005G172500--Sobic009G056200 Sobic001G493200 Sobic001G493200 Sobic005G172500--Sobic001G493200 Sobic001G227400 Sobic001G227400 Sobic005G172500--Sobic001G227400 Sobic002G371300 Sobic002G371300 Sobic005G172500--Sobic002G371300 Sobic002G142900 Sobic002G142900 Sobic005G172500--Sobic002G142900 Sobic003G408600 Sobic003G408600 Sobic005G172500--Sobic003G408600 Sobic004G257100 Sobic004G257100 Sobic005G172500--Sobic004G257100 Sobic002G133300 Sobic002G133300 Sobic004G131300--Sobic002G133300 Sobic004G131300--Sobic002G142900 Sobic004G131300--Sobic005G172500 Sobic009G084900 Sobic009G084900 Sobic004G131300--Sobic009G084900 Sobic004G256500 Sobic004G256500 Sobic004G131300--Sobic004G256500 Sobic010G059500 Sobic010G059500 Sobic004G131300--Sobic010G059500 Sobic007G054800 Sobic007G054800 Sobic004G131300--Sobic007G054800 Sobic006G136400 Sobic006G136400 Sobic004G131300--Sobic006G136400 Sobic002G256700 Sobic002G256700 Sobic004G131300--Sobic002G256700 Sobic006G148100--Sobic005G172500 Sobic010G118000 Sobic010G118000 Sobic006G148100--Sobic010G118000 Sobic006G148100--Sobic009G056200 Sobic006G148100--Sobic002G371300 Sobic004G353000 Sobic004G353000 Sobic006G148100--Sobic004G353000 Sobic001G259000 Sobic001G259000 Sobic006G148100--Sobic001G259000 Sobic009G143800 Sobic009G143800 Sobic006G148100--Sobic009G143800 Sobic008G131000 Sobic008G131000 Sobic006G148100--Sobic008G131000 Sobic001G473600 Sobic001G473600 Sobic006G148100--Sobic001G473600 Sobic009G056200--Sobic005G172500 Sobic001G194200 Sobic001G194200 Sobic009G056200--Sobic001G194200 Sobic009G056200--Sobic001G227400 Sobic006G055200 Sobic006G055200 Sobic009G056200--Sobic006G055200 Sobic003G195000 Sobic003G195000 Sobic009G056200--Sobic003G195000 Sobic007G207200 Sobic007G207200 Sobic009G056200--Sobic007G207200 Sobic008G063300 Sobic008G063300 Sobic009G056200--Sobic008G063300 Sobic009G056200--Sobic002G142900 Sobic006G055300 Sobic006G055300 Sobic009G056200--Sobic006G055300 Sobic001G493200--Sobic009G084900 Sobic003G266001 Sobic003G266001 Sobic001G493200--Sobic003G266001 Sobic001G493200--Sobic010G059500 Sobic001G433800 Sobic001G433800 Sobic001G493200--Sobic001G433800 Sobic004G072100 Sobic004G072100 Sobic001G493200--Sobic004G072100 Sobic004G096400 Sobic004G096400 Sobic001G493200--Sobic004G096400 Sobic007G132100 Sobic007G132100 Sobic001G493200--Sobic007G132100 Sobic006G077200 Sobic006G077200 Sobic001G493200--Sobic006G077200 Sobic001G493200--Sobic003G408600 Sobic009G044800 Sobic009G044800 Sobic001G227400--Sobic009G044800 Sobic007G218000 Sobic007G218000 Sobic001G227400--Sobic007G218000 Sobic001G227400--Sobic001G493200 Sobic001G493700 Sobic001G493700 Sobic001G227400--Sobic001G493700 Sobic006G088200 Sobic006G088200 Sobic001G227400--Sobic006G088200 Sobic001G227400--Sobic009G084900 Sobic001G227400--Sobic003G195000 Sobic001G227400--Sobic005G172500 Sobic001G289800 Sobic001G289800 Sobic001G227400--Sobic001G289800 Sobic001G273700 Sobic001G273700 Sobic002G371300--Sobic001G273700 Sobic002G371300--Sobic007G132100 Sobic002G371300--Sobic005G172500 Sobic003G118200 Sobic003G118200 Sobic002G371300--Sobic003G118200 Sobic002G371300--Sobic004G353000 Sobic004G178200 Sobic004G178200 Sobic002G371300--Sobic004G178200 Sobic002G371300--Sobic010G118000 Sobic002G371300--Sobic007G218000 Sobic003G155900 Sobic003G155900 Sobic002G371300--Sobic003G155900 Sobic002G142900--Sobic004G131300 Sobic001G263600 Sobic001G263600 Sobic002G142900--Sobic001G263600 Sobic002G142900--Sobic002G133300 Sobic002G142900--Sobic003G195000 Sobic002G142900--Sobic007G054800 Sobic005G162500 Sobic005G162500 Sobic002G142900--Sobic005G162500 Sobic003G104000 Sobic003G104000 Sobic002G142900--Sobic003G104000 Sobic002G142900--Sobic002G256700 Sobic002G335600 Sobic002G335600 Sobic002G142900--Sobic002G335600 Sobic001G540400 Sobic001G540400 Sobic003G408600--Sobic001G540400 Sobic005G008800 Sobic005G008800 Sobic003G408600--Sobic005G008800 Sobic002G397500 Sobic002G397500 Sobic003G408600--Sobic002G397500 Sobic005G112300 Sobic005G112300 Sobic003G408600--Sobic005G112300 Sobic007G163100 Sobic007G163100 Sobic003G408600--Sobic007G163100 Sobic010G112100 Sobic010G112100 Sobic003G408600--Sobic010G112100 Sobic001G058700 Sobic001G058700 Sobic003G408600--Sobic001G058700 Sobic002G071500 Sobic002G071500 Sobic003G408600--Sobic002G071500 Sobic002G045600 Sobic002G045600 Sobic003G408600--Sobic002G045600 Sobic004G257100--Sobic004G131300 Sobic001G251100 Sobic001G251100 Sobic004G257100--Sobic001G251100 Sobic004G092500 Sobic004G092500 Sobic004G257100--Sobic004G092500 Sobic006G073200 Sobic006G073200 Sobic004G257100--Sobic006G073200 Sobic004G257100--Sobic005G172500 Sobic008G004600 Sobic008G004600 Sobic004G257100--Sobic008G004600 Sobic004G257100--Sobic001G227400 Sobic008G112800 Sobic008G112800 Sobic004G257100--Sobic008G112800 Sobic001G392300 Sobic001G392300 Sobic004G257100--Sobic001G392300
Octagon: transcription factors


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