Gene annotation
Transcriptome id Sobic.001G191700.1
Synonym EMB2016, Sb01g016850
Functional annotation expressed protein
UniProt C5WVA8
Pfam PF15912
Panther DB PTHR23185 PTHR23185:SF0
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G05680 : embryo defective 2016
RAP-DB (Rice) LOC_Os03g35340.1 : expressed protein
MaizeGDB (Corn) Zm00025a017409
Brachypodium KQK18361 , KQK18360 , KQK18363 , KQK18362 , PNT75933 , PNT75936 , PNT75934 , PNT75935
Barley HORVU7Hr1G083160.9 , HORVU7Hr1G083160.8 , HORVU7Hr1G083160.3 , HORVU7Hr1G083160.2 , HORVU7Hr1G083160.1 , HORVU7Hr1G083160.7 , HORVU7Hr1G083160.6 , HORVU7Hr1G083160.5 , HORVU7Hr1G083160.4 , HORVU7Hr1G083160.19 , HORVU7Hr1G083160.18 , HORVU7Hr1G083160.13 , HORVU7Hr1G083160.12 , HORVU7Hr1G083160.11 , HORVU7Hr1G083160.10 , HORVU7Hr1G083160.17 , HORVU7Hr1G083160.16 , HORVU7Hr1G083160.15 , HORVU7Hr1G083160.14 , HORVU7Hr1G083160.20
Wheat TraesCS7B02G249400 , TraesCS7B02G249400 , TraesCS7D02G345400 , TraesCS7A02G338200
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G299700 CCR4-Not complex component, Not1domain containing protein, expressed K12604: CNOT1, CCR4-NOT transcription complex subunit 1
2 Sobic.001G542400 CCR4-Not complex component, Not1domain containing protein, expressed K12604: CNOT1, CCR4-NOT transcription complex subunit 1
3 Sobic.001G004400 - K14290: XPO1, exportin-1
4 Sobic.005G162500 ubiquitin carboxyl-terminal hydrolase, putative, expressed K11838: USP7, ubiquitin carboxyl-terminal hydrolase 7
5 Sobic.001G400500 calpain, putative, expressed -
6 Sobic.009G109200 phosphatidylinositol kinase, putative, expressed K07203: MTOR, FRAP, serine/threonine-protein kinase mTOR
7 Sobic.004G248600 expressed protein K15166: mediator of RNA polymerase II transcription subunit 23
8 Sobic.006G032300 HECT-domain domain containing protein, expressed K10590: E3 ubiquitin-protein ligase TRIP12
9 Sobic.001G117200 AGC_AGC_other_GWLd.2 - ACG kinases include homologs to PKA, PKG and PKC, expressed -
10 Sobic.001G110600 HEAT repeat family protein, putative, expressed -
11 Sobic.002G308700 expressed protein K11643: CHD4, chromodomain-helicase-DNA-binding protein 4
12 Sobic.007G098500 BIG, putative, expressed K10691: UBR4, E3 ubiquitin-protein ligase UBR4
13 Sobic.002G133300 ZOS9-20 - C2H2 zinc finger protein, expressed K14400: pre-mRNA cleavage complex 2 protein Pcf11
14 Sobic.001G063700 expressed protein -
15 Sobic.001G137000 aberrant pollen transmission 1, putative, expressed -
16 Sobic.003G186000 WD domain, G-beta repeat domain containing protein, expressed -
17 Sobic.003G408600 GYF domain containing protein, putative, expressed K18730: PERQ amino acid-rich with GYF domain-containing protein
18 Sobic.010G105200 SYD, putative, expressed -
19 Sobic.003G312100 guanine nucleotide exchange family protein, putative, expressed -
20 Sobic.002G179400 DNA binding protein, putative, expressed -


Gene co-expression network
sample Sobic001G191700 Sobic001G191700 Sobic001G299700 Sobic001G299700 Sobic001G191700--Sobic001G299700 Sobic001G542400 Sobic001G542400 Sobic001G191700--Sobic001G542400 Sobic001G004400 Sobic001G004400 Sobic001G191700--Sobic001G004400 Sobic005G162500 Sobic005G162500 Sobic001G191700--Sobic005G162500 Sobic001G400500 Sobic001G400500 Sobic001G191700--Sobic001G400500 Sobic009G109200 Sobic009G109200 Sobic001G191700--Sobic009G109200 Sobic004G248600 Sobic004G248600 Sobic001G191700--Sobic004G248600 Sobic006G032300 Sobic006G032300 Sobic001G191700--Sobic006G032300 Sobic001G117200 Sobic001G117200 Sobic001G191700--Sobic001G117200 Sobic001G299700--Sobic001G542400 Sobic003G186000 Sobic003G186000 Sobic001G299700--Sobic003G186000 Sobic010G105200 Sobic010G105200 Sobic001G299700--Sobic010G105200 Sobic001G299700--Sobic001G191700 Sobic001G299700--Sobic009G109200 Sobic005G008800 Sobic005G008800 Sobic001G299700--Sobic005G008800 Sobic008G001200 Sobic008G001200 Sobic001G299700--Sobic008G001200 Sobic007G062800 Sobic007G062800 Sobic001G299700--Sobic007G062800 Sobic006G040500 Sobic006G040500 Sobic001G299700--Sobic006G040500 Sobic001G542400--Sobic001G299700 Sobic001G542400--Sobic009G109200 Sobic001G542400--Sobic001G400500 Sobic009G256300 Sobic009G256300 Sobic001G542400--Sobic009G256300 Sobic010G112100 Sobic010G112100 Sobic001G542400--Sobic010G112100 Sobic004G276400 Sobic004G276400 Sobic001G542400--Sobic004G276400 Sobic001G542400--Sobic010G105200 Sobic001G542400--Sobic005G008800 Sobic001G542400--Sobic008G001200 Sobic002G133300 Sobic002G133300 Sobic001G004400--Sobic002G133300 Sobic001G110600 Sobic001G110600 Sobic001G004400--Sobic001G110600 Sobic007G054800 Sobic007G054800 Sobic001G004400--Sobic007G054800 Sobic001G004400--Sobic004G248600 Sobic003G312100 Sobic003G312100 Sobic001G004400--Sobic003G312100 Sobic001G493700 Sobic001G493700 Sobic001G004400--Sobic001G493700 Sobic003G221400 Sobic003G221400 Sobic001G004400--Sobic003G221400 Sobic001G004400--Sobic004G276400 Sobic002G179400 Sobic002G179400 Sobic001G004400--Sobic002G179400 Sobic005G162500--Sobic001G493700 Sobic002G429300 Sobic002G429300 Sobic005G162500--Sobic002G429300 Sobic001G370900 Sobic001G370900 Sobic005G162500--Sobic001G370900 Sobic009G131300 Sobic009G131300 Sobic005G162500--Sobic009G131300 Sobic008G088872 Sobic008G088872 Sobic005G162500--Sobic008G088872 Sobic005G162500--Sobic003G186000 Sobic008G098900 Sobic008G098900 Sobic005G162500--Sobic008G098900 Sobic005G162500--Sobic004G276400 Sobic002G335600 Sobic002G335600 Sobic005G162500--Sobic002G335600 Sobic001G400500--Sobic001G542400 Sobic001G400500--Sobic009G109200 Sobic001G400500--Sobic010G112100 Sobic001G400500--Sobic005G008800 Sobic001G063700 Sobic001G063700 Sobic001G400500--Sobic001G063700 Sobic001G400500--Sobic009G256300 Sobic001G400500--Sobic010G105200 Sobic001G540400 Sobic001G540400 Sobic001G400500--Sobic001G540400 Sobic003G408600 Sobic003G408600 Sobic001G400500--Sobic003G408600 Sobic009G109200--Sobic010G105200 Sobic004G242400 Sobic004G242400 Sobic009G109200--Sobic004G242400 Sobic002G397500 Sobic002G397500 Sobic009G109200--Sobic002G397500 Sobic009G109200--Sobic001G542400 Sobic009G109200--Sobic001G540400 Sobic009G109200--Sobic005G008800 Sobic009G109200--Sobic004G276400 Sobic009G109200--Sobic003G408600 Sobic009G109200--Sobic010G112100 Sobic004G248600--Sobic009G109200 Sobic004G248600--Sobic001G004400 Sobic004G248600--Sobic002G133300 Sobic003G072200 Sobic003G072200 Sobic004G248600--Sobic003G072200 Sobic004G248600--Sobic003G312100 Sobic004G248600--Sobic003G186000 Sobic004G248600--Sobic004G276400 Sobic004G248600--Sobic002G397500 Sobic004G248600--Sobic005G162500 Sobic006G032300--Sobic002G335600 Sobic006G032300--Sobic008G088872 Sobic004G053500 Sobic004G053500 Sobic006G032300--Sobic004G053500 Sobic007G018400 Sobic007G018400 Sobic006G032300--Sobic007G018400 Sobic001G273700 Sobic001G273700 Sobic006G032300--Sobic001G273700 Sobic002G042600 Sobic002G042600 Sobic006G032300--Sobic002G042600 Sobic006G032300--Sobic001G191700 Sobic006G032300--Sobic009G131300 Sobic006G032300--Sobic002G429300 Sobic001G117200--Sobic008G098900 Sobic001G117200--Sobic003G408600 Sobic002G430000 Sobic002G430000 Sobic001G117200--Sobic002G430000 Sobic001G117200--Sobic001G540400 Sobic001G137000 Sobic001G137000 Sobic001G117200--Sobic001G137000 Sobic004G113400 Sobic004G113400 Sobic001G117200--Sobic004G113400 Sobic001G542500 Sobic001G542500 Sobic001G117200--Sobic001G542500 Sobic001G058700 Sobic001G058700 Sobic001G117200--Sobic001G058700 Sobic008G092600 Sobic008G092600 Sobic001G117200--Sobic008G092600
Octagon: transcription factors


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