Gene annotation
Transcriptome id Sobic.007G098500.1,Sobic.007G098500.2
Synonym Sb07g010440, TIR3, BIG, CRM1, DOC1, ASA1, LPR1, UMB1
Functional annotation BIG, putative, expressed
UniProt A0A1B6PGT5
Pfam PF00569 PF13764
Panther DB PTHR21725 PTHR21725:SF1
NCBI CDD KOG1776; Zn-binding protein Push
KEGG Orthology K10691; UBR4, E3 ubiquitin-protein ligase UBR4
Gene Ontology GO:0008270; zinc ion binding


Orthologs (automatic annotation)
TAIR AT3G02260 : auxin transport protein (BIG)
RAP-DB (Rice) LOC_Os09g07300.1 : BIG, putative, expressed
MaizeGDB (Corn) Zm00025a046184
Brachypodium PNT62813
Barley HORVU5Hr1G051500.1 , HORVU5Hr1G051500.2 , HORVU5Hr1G051500.3 , HORVU5Hr1G051500.4 , HORVU5Hr1G051500.5
Wheat TraesCS5D02G171900 , TraesCS5B02G164500 , TraesCS5B02G164500 , TraesCS5A02G167500 , TraesCS5A02G167500 , TraesCS5A02G167500 , TraesCS5D02G171900
Populus PNS96176 , PNS96177


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G092600 ubiquitin-protein ligase 1, putative, expressed K10592: HUWE1, MULE, E3 ubiquitin-protein ligase HUWE1
2 Sobic.002G396500 FAT domain-containing protein, putative, expressed K08874: transformation/transcription domain-associated protein
3 Sobic.010G105200 SYD, putative, expressed -
4 Sobic.003G072200 zinc finger protein, putative, expressed K11978: E3 ubiquitin-protein ligase UBR3
5 Sobic.001G050600 expressed protein -
6 Sobic.001G137000 aberrant pollen transmission 1, putative, expressed -
7 Sobic.003G233400 expressed protein -
8 Sobic.001G287500 heat shock protein DnaJ, putative, expressed K09533: DnaJ homolog subfamily C member 13
9 Sobic.006G265200 zinc finger, RING-type, putative, expressed K17592: sacsin
10 Sobic.009G109200 phosphatidylinositol kinase, putative, expressed K07203: MTOR, FRAP, serine/threonine-protein kinase mTOR
11 Sobic.003G312100 guanine nucleotide exchange family protein, putative, expressed -
12 Sobic.003G186000 WD domain, G-beta repeat domain containing protein, expressed -
13 Sobic.002G397500 SAC3/GANP family protein, expressed -
14 Sobic.007G062800 SET domain containing protein, expressed -
15 Sobic.003G408600 GYF domain containing protein, putative, expressed K18730: PERQ amino acid-rich with GYF domain-containing protein
16 Sobic.001G347500 expressed protein -
17 Sobic.001G117200 AGC_AGC_other_GWLd.2 - ACG kinases include homologs to PKA, PKG and PKC, expressed -
18 Sobic.004G051200 WD domain containing protein, putative, expressed -
19 Sobic.004G276400 expressed protein K11320: E1A-binding protein p400
20 Sobic.001G058700 XRN 5\'-3\' exonuclease N-terminus domain containing protein, expressed K12619: XRN2, 5'-3' exoribonuclease 2


Gene co-expression network
sample Sobic007G098500 Sobic007G098500 Sobic008G092600 Sobic008G092600 Sobic007G098500--Sobic008G092600 Sobic002G396500 Sobic002G396500 Sobic007G098500--Sobic002G396500 Sobic010G105200 Sobic010G105200 Sobic007G098500--Sobic010G105200 Sobic003G072200 Sobic003G072200 Sobic007G098500--Sobic003G072200 Sobic001G050600 Sobic001G050600 Sobic007G098500--Sobic001G050600 Sobic001G137000 Sobic001G137000 Sobic007G098500--Sobic001G137000 Sobic003G233400 Sobic003G233400 Sobic007G098500--Sobic003G233400 Sobic001G287500 Sobic001G287500 Sobic007G098500--Sobic001G287500 Sobic006G265200 Sobic006G265200 Sobic007G098500--Sobic006G265200 Sobic008G092600--Sobic007G098500 Sobic002G147600 Sobic002G147600 Sobic008G092600--Sobic002G147600 Sobic008G092600--Sobic001G137000 Sobic004G040500 Sobic004G040500 Sobic008G092600--Sobic004G040500 Sobic008G092600--Sobic003G072200 Sobic008G098900 Sobic008G098900 Sobic008G092600--Sobic008G098900 Sobic008G085300 Sobic008G085300 Sobic008G092600--Sobic008G085300 Sobic008G092600--Sobic003G233400 Sobic001G117200 Sobic001G117200 Sobic008G092600--Sobic001G117200 Sobic002G396500--Sobic007G098500 Sobic010G001100 Sobic010G001100 Sobic002G396500--Sobic010G001100 Sobic002G396500--Sobic010G105200 Sobic002G396500--Sobic003G072200 Sobic002G396500--Sobic008G092600 Sobic002G396500--Sobic001G137000 Sobic002G396500--Sobic003G233400 Sobic003G312100 Sobic003G312100 Sobic002G396500--Sobic003G312100 Sobic009G109200 Sobic009G109200 Sobic002G396500--Sobic009G109200 Sobic004G276400 Sobic004G276400 Sobic010G105200--Sobic004G276400 Sobic010G105200--Sobic009G109200 Sobic003G186000 Sobic003G186000 Sobic010G105200--Sobic003G186000 Sobic010G105200--Sobic007G098500 Sobic004G242400 Sobic004G242400 Sobic010G105200--Sobic004G242400 Sobic004G034900 Sobic004G034900 Sobic010G105200--Sobic004G034900 Sobic007G062800 Sobic007G062800 Sobic010G105200--Sobic007G062800 Sobic005G008800 Sobic005G008800 Sobic010G105200--Sobic005G008800 Sobic010G010700 Sobic010G010700 Sobic010G105200--Sobic010G010700 Sobic002G397500 Sobic002G397500 Sobic003G072200--Sobic002G397500 Sobic003G072200--Sobic007G098500 Sobic003G072200--Sobic007G062800 Sobic003G072200--Sobic003G233400 Sobic009G084900 Sobic009G084900 Sobic003G072200--Sobic009G084900 Sobic003G072200--Sobic008G098900 Sobic005G112300 Sobic005G112300 Sobic003G072200--Sobic005G112300 Sobic001G347500 Sobic001G347500 Sobic003G072200--Sobic001G347500 Sobic002G133300 Sobic002G133300 Sobic003G072200--Sobic002G133300 Sobic001G050600--Sobic007G098500 Sobic001G037100 Sobic001G037100 Sobic001G050600--Sobic001G037100 Sobic001G058700 Sobic001G058700 Sobic001G050600--Sobic001G058700 Sobic001G219900 Sobic001G219900 Sobic001G050600--Sobic001G219900 Sobic007G172400 Sobic007G172400 Sobic001G050600--Sobic007G172400 Sobic001G050600--Sobic001G137000 Sobic001G280900 Sobic001G280900 Sobic001G050600--Sobic001G280900 Sobic001G050600--Sobic008G092600 Sobic003G259100 Sobic003G259100 Sobic001G050600--Sobic003G259100 Sobic001G137000--Sobic008G092600 Sobic001G137000--Sobic007G098500 Sobic001G137000--Sobic003G233400 Sobic001G137000--Sobic003G312100 Sobic001G137000--Sobic001G117200 Sobic001G137000--Sobic002G396500 Sobic001G137000--Sobic001G050600 Sobic001G137000--Sobic008G098900 Sobic008G099800 Sobic008G099800 Sobic001G137000--Sobic008G099800 Sobic003G233400--Sobic001G287500 Sobic003G233400--Sobic003G072200 Sobic003G233400--Sobic007G098500 Sobic003G233400--Sobic001G137000 Sobic003G233400--Sobic003G312100 Sobic003G233400--Sobic008G092600 Sobic003G233400--Sobic002G396500 Sobic002G179400 Sobic002G179400 Sobic003G233400--Sobic002G179400 Sobic004G051200 Sobic004G051200 Sobic003G233400--Sobic004G051200 Sobic001G287500--Sobic003G233400 Sobic001G287500--Sobic003G072200 Sobic001G287500--Sobic007G098500 Sobic001G287500--Sobic004G051200 Sobic001G287500--Sobic008G092600 Sobic001G287500--Sobic001G347500 Sobic001G426600 Sobic001G426600 Sobic001G287500--Sobic001G426600 Sobic001G287500--Sobic004G040500 Sobic004G204100 Sobic004G204100 Sobic001G287500--Sobic004G204100 Sobic006G265200--Sobic007G098500 Sobic006G265200--Sobic008G092600 Sobic006G265200--Sobic010G105200 Sobic006G265200--Sobic001G117200 Sobic006G265200--Sobic001G287500 Sobic006G265200--Sobic002G147600 Sobic006G265200--Sobic004G040500 Sobic007G163100 Sobic007G163100 Sobic006G265200--Sobic007G163100 Sobic006G265200--Sobic003G233400
Octagon: transcription factors


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