Gene annotation
Transcriptome id Sobic.006G265200.1
Synonym Sb06g032770
Functional annotation zinc finger, RING-type, putative, expressed
UniProt A0A1B6PP22
Pfam PF13920
Panther DB PTHR15600 PTHR15600:SF28
NCBI CDD KOG4172; Predicted E3 ubiquitin ligase
KEGG Orthology K17592; sacsin
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G23110 : Zinc finger, C3HC4 type (RING finger) family protein
RAP-DB (Rice) LOC_Os07g45350.4 : zinc finger, RING-type, putative, expressed
MaizeGDB (Corn) Zm00025a009315
Brachypodium KQJ85267 , PNT62137 , PNT62138
Barley HORVU4Hr1G029420.1 , HORVU4Hr1G029420.3 , HORVU4Hr1G029420.5 , HORVU4Hr1G029420.4 , HORVU4Hr1G029420.7 , HORVU4Hr1G029420.6 , HORVU4Hr1G029420.9 , HORVU4Hr1G029420.8 , HORVU2Hr1G120060.9 , HORVU2Hr1G120060.8 , HORVU2Hr1G120060.3 , HORVU2Hr1G120060.2 , HORVU2Hr1G120060.1 , HORVU2Hr1G120060.7 , HORVU2Hr1G120060.6 , HORVU2Hr1G120060.5 , HORVU2Hr1G120060.4 , HORVU2Hr1G120060.12 , HORVU2Hr1G120060.11 , HORVU2Hr1G120060.10 , HORVU4Hr1G029420.10
Wheat TraesCS2D02G557400 , TraesCS7B02G419700 , TraesCS2B02G586500 , TraesCS2A02G556200
Populus -


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cDNA sequences
Sobic.006G265200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G098500 BIG, putative, expressed K10691: UBR4, E3 ubiquitin-protein ligase UBR4
2 Sobic.008G092600 ubiquitin-protein ligase 1, putative, expressed K10592: HUWE1, MULE, E3 ubiquitin-protein ligase HUWE1
3 Sobic.010G105200 SYD, putative, expressed -
4 Sobic.001G117200 AGC_AGC_other_GWLd.2 - ACG kinases include homologs to PKA, PKG and PKC, expressed -
5 Sobic.001G287500 heat shock protein DnaJ, putative, expressed K09533: DnaJ homolog subfamily C member 13
6 Sobic.002G147600 ubiquitin-protein ligase 1, putative, expressed K10592: HUWE1, MULE, E3 ubiquitin-protein ligase HUWE1
7 Sobic.004G040500 expressed protein -
8 Sobic.007G163100 expressed protein K14972: PAXIP1, PAX-interacting protein 1
9 Sobic.003G233400 expressed protein -
10 Sobic.009G109200 phosphatidylinositol kinase, putative, expressed K07203: MTOR, FRAP, serine/threonine-protein kinase mTOR
11 Sobic.001G137000 aberrant pollen transmission 1, putative, expressed -
12 Sobic.004G034900 histone acetyltransferase HAC1, putative, expressed K04498: EP300, CREBBP, E1A/CREB-binding protein
13 Sobic.003G072200 zinc finger protein, putative, expressed K11978: E3 ubiquitin-protein ligase UBR3
14 Sobic.004G023100 protein binding protein, putative, expressed -
15 Sobic.003G408600 GYF domain containing protein, putative, expressed K18730: PERQ amino acid-rich with GYF domain-containing protein
16 Sobic.001G110600 HEAT repeat family protein, putative, expressed -
17 Sobic.001G540400 expressed protein -
18 Sobic.008G085300 hhH-GPD superfamily base excision DNA repair protein, expressed -
19 Sobic.001G542500 1,3-beta-glucan synthase component domain containing protein, expressed K11000: callose synthase
20 Sobic.004G113400 cyclic nucleotide-gated ion channel 1, putative, expressed K05391: cyclic nucleotide gated channel, plant


Gene co-expression network
sample Sobic006G265200 Sobic006G265200 Sobic007G098500 Sobic007G098500 Sobic006G265200--Sobic007G098500 Sobic008G092600 Sobic008G092600 Sobic006G265200--Sobic008G092600 Sobic010G105200 Sobic010G105200 Sobic006G265200--Sobic010G105200 Sobic001G117200 Sobic001G117200 Sobic006G265200--Sobic001G117200 Sobic001G287500 Sobic001G287500 Sobic006G265200--Sobic001G287500 Sobic002G147600 Sobic002G147600 Sobic006G265200--Sobic002G147600 Sobic004G040500 Sobic004G040500 Sobic006G265200--Sobic004G040500 Sobic007G163100 Sobic007G163100 Sobic006G265200--Sobic007G163100 Sobic003G233400 Sobic003G233400 Sobic006G265200--Sobic003G233400 Sobic007G098500--Sobic008G092600 Sobic002G396500 Sobic002G396500 Sobic007G098500--Sobic002G396500 Sobic007G098500--Sobic010G105200 Sobic003G072200 Sobic003G072200 Sobic007G098500--Sobic003G072200 Sobic001G050600 Sobic001G050600 Sobic007G098500--Sobic001G050600 Sobic001G137000 Sobic001G137000 Sobic007G098500--Sobic001G137000 Sobic007G098500--Sobic003G233400 Sobic007G098500--Sobic001G287500 Sobic007G098500--Sobic006G265200 Sobic008G092600--Sobic007G098500 Sobic008G092600--Sobic002G147600 Sobic008G092600--Sobic001G137000 Sobic008G092600--Sobic004G040500 Sobic008G092600--Sobic003G072200 Sobic008G098900 Sobic008G098900 Sobic008G092600--Sobic008G098900 Sobic008G085300 Sobic008G085300 Sobic008G092600--Sobic008G085300 Sobic008G092600--Sobic003G233400 Sobic008G092600--Sobic001G117200 Sobic004G276400 Sobic004G276400 Sobic010G105200--Sobic004G276400 Sobic009G109200 Sobic009G109200 Sobic010G105200--Sobic009G109200 Sobic003G186000 Sobic003G186000 Sobic010G105200--Sobic003G186000 Sobic010G105200--Sobic007G098500 Sobic004G242400 Sobic004G242400 Sobic010G105200--Sobic004G242400 Sobic004G034900 Sobic004G034900 Sobic010G105200--Sobic004G034900 Sobic007G062800 Sobic007G062800 Sobic010G105200--Sobic007G062800 Sobic005G008800 Sobic005G008800 Sobic010G105200--Sobic005G008800 Sobic010G010700 Sobic010G010700 Sobic010G105200--Sobic010G010700 Sobic001G117200--Sobic008G098900 Sobic003G408600 Sobic003G408600 Sobic001G117200--Sobic003G408600 Sobic002G430000 Sobic002G430000 Sobic001G117200--Sobic002G430000 Sobic001G540400 Sobic001G540400 Sobic001G117200--Sobic001G540400 Sobic001G117200--Sobic001G137000 Sobic004G113400 Sobic004G113400 Sobic001G117200--Sobic004G113400 Sobic001G542500 Sobic001G542500 Sobic001G117200--Sobic001G542500 Sobic001G058700 Sobic001G058700 Sobic001G117200--Sobic001G058700 Sobic001G117200--Sobic008G092600 Sobic001G287500--Sobic003G233400 Sobic001G287500--Sobic003G072200 Sobic001G287500--Sobic007G098500 Sobic004G051200 Sobic004G051200 Sobic001G287500--Sobic004G051200 Sobic001G287500--Sobic008G092600 Sobic001G347500 Sobic001G347500 Sobic001G287500--Sobic001G347500 Sobic001G426600 Sobic001G426600 Sobic001G287500--Sobic001G426600 Sobic001G287500--Sobic004G040500 Sobic004G204100 Sobic004G204100 Sobic001G287500--Sobic004G204100 Sobic002G147600--Sobic008G092600 Sobic002G147600--Sobic008G098900 Sobic002G147600--Sobic004G040500 Sobic002G147600--Sobic008G085300 Sobic002G146300 Sobic002G146300 Sobic002G147600--Sobic002G146300 Sobic002G335600 Sobic002G335600 Sobic002G147600--Sobic002G335600 Sobic007G133700 Sobic007G133700 Sobic002G147600--Sobic007G133700 Sobic003G205200 Sobic003G205200 Sobic002G147600--Sobic003G205200 Sobic001G370900 Sobic001G370900 Sobic002G147600--Sobic001G370900 Sobic004G040500--Sobic008G092600 Sobic004G040500--Sobic002G147600 Sobic004G040500--Sobic002G335600 Sobic001G493700 Sobic001G493700 Sobic004G040500--Sobic001G493700 Sobic004G040500--Sobic003G072200 Sobic004G040500--Sobic003G233400 Sobic004G023100 Sobic004G023100 Sobic004G040500--Sobic004G023100 Sobic004G040500--Sobic001G287500 Sobic003G171400 Sobic003G171400 Sobic004G040500--Sobic003G171400 Sobic007G163100--Sobic003G408600 Sobic008G118200 Sobic008G118200 Sobic007G163100--Sobic008G118200 Sobic002G045600 Sobic002G045600 Sobic007G163100--Sobic002G045600 Sobic007G163100--Sobic001G117200 Sobic007G163100--Sobic003G072200 Sobic003G422500 Sobic003G422500 Sobic007G163100--Sobic003G422500 Sobic007G163100--Sobic001G540400 Sobic001G289800 Sobic001G289800 Sobic007G163100--Sobic001G289800 Sobic007G163100--Sobic004G113400 Sobic003G233400--Sobic001G287500 Sobic003G233400--Sobic003G072200 Sobic003G233400--Sobic007G098500 Sobic003G233400--Sobic001G137000 Sobic003G312100 Sobic003G312100 Sobic003G233400--Sobic003G312100 Sobic003G233400--Sobic008G092600 Sobic003G233400--Sobic002G396500 Sobic002G179400 Sobic002G179400 Sobic003G233400--Sobic002G179400 Sobic003G233400--Sobic004G051200
Octagon: transcription factors


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