Gene annotation
Transcriptome id Sobic.004G051200.1
Synonym
Functional annotation WD domain containing protein, putative, expressed
UniProt A0A194YNW7
Pfam PF16057 PF13385 PF00400 PF14844 PF15787 PF02138
Panther DB PTHR13743 PTHR13743:SF83
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT1G58230 : binding
RAP-DB (Rice) LOC_Os02g06720.1 : WD domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a041888 , Zm00025a000049 , Zm00025a034822
Brachypodium PNT65953 , PNT65952 , PNT65955 , PNT65957 , PNT65956 , PNT65954 , KQK17107
Barley HORVU7Hr1G105700.26 , HORVU7Hr1G105700.8 , HORVU7Hr1G105700.9 , HORVU7Hr1G105700.2 , HORVU7Hr1G105700.3 , HORVU7Hr1G105700.1 , HORVU7Hr1G105700.6 , HORVU7Hr1G105700.7 , HORVU7Hr1G105700.4 , HORVU7Hr1G105700.5 , HORVU7Hr1G105700.18 , HORVU7Hr1G105700.19 , HORVU7Hr1G105700.10 , HORVU7Hr1G105700.11 , HORVU7Hr1G105700.12 , HORVU7Hr1G105700.13 , HORVU7Hr1G105700.14 , HORVU7Hr1G105700.15 , HORVU7Hr1G105700.16 , HORVU7Hr1G105700.17 , HORVU6Hr1G026400.49 , HORVU6Hr1G026400.48 , HORVU6Hr1G026400.41 , HORVU6Hr1G026400.40 , HORVU6Hr1G026400.43 , HORVU6Hr1G026400.42 , HORVU6Hr1G026400.45 , HORVU6Hr1G026400.44 , HORVU6Hr1G026400.47 , HORVU6Hr1G026400.46 , HORVU6Hr1G026400.8 , HORVU6Hr1G026400.9 , HORVU6Hr1G026400.1 , HORVU6Hr1G026400.2 , HORVU6Hr1G026400.3 , HORVU6Hr1G026400.4 , HORVU6Hr1G026400.5 , HORVU6Hr1G026400.6 , HORVU6Hr1G026400.7 , HORVU6Hr1G026400.12 , HORVU6Hr1G026400.13 , HORVU6Hr1G026400.10 , HORVU6Hr1G026400.11 , HORVU6Hr1G026400.16 , HORVU6Hr1G026400.17 , HORVU6Hr1G026400.14 , HORVU6Hr1G026400.15 , HORVU6Hr1G026400.18 , HORVU6Hr1G026400.19 , HORVU7Hr1G105700.25 , HORVU7Hr1G105700.24 , HORVU7Hr1G105700.20 , HORVU7Hr1G105700.23 , HORVU7Hr1G105700.22 , HORVU6Hr1G026400.29 , HORVU6Hr1G026400.28 , HORVU6Hr1G026400.23 , HORVU6Hr1G026400.22 , HORVU6Hr1G026400.21 , HORVU6Hr1G026400.20 , HORVU6Hr1G026400.27 , HORVU6Hr1G026400.26 , HORVU6Hr1G026400.25 , HORVU6Hr1G026400.24 , HORVU6Hr1G026400.50 , HORVU6Hr1G026400.51 , HORVU6Hr1G026400.38 , HORVU6Hr1G026400.39 , HORVU6Hr1G026400.30 , HORVU6Hr1G026400.31 , HORVU6Hr1G026400.32 , HORVU6Hr1G026400.33 , HORVU6Hr1G026400.34 , HORVU6Hr1G026400.35 , HORVU6Hr1G026400.36 , HORVU6Hr1G026400.37
Wheat TraesCS6D02G126400 , TraesCS6A02G137700 , TraesCS6B02G166100 , TraesCS7B02G359800 , TraesCS7D02G447300 , TraesCS7D02G447300 , TraesCS7A02G459500
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G072200 zinc finger protein, putative, expressed K11978: E3 ubiquitin-protein ligase UBR3
2 Sobic.006G037700 phosphoribulokinase/Uridine kinase family protein, expressed -
3 Sobic.001G287500 heat shock protein DnaJ, putative, expressed K09533: DnaJ homolog subfamily C member 13
4 Sobic.003G233400 expressed protein -
5 Sobic.007G098500 BIG, putative, expressed K10691: UBR4, E3 ubiquitin-protein ligase UBR4
6 Sobic.008G099800 expressed protein -
7 Sobic.001G065000 expressed protein -
8 Sobic.010G275500 EF hand family protein, putative, expressed -
9 Sobic.001G347500 expressed protein -
10 Sobic.001G534800 Putative ortholog gene associated with awn presence/absence in wheat(PubMedID : 25237112)@adapitin protein, putative, expressed K11824: AP-2 complex subunit alpha
11 Sobic.001G137000 aberrant pollen transmission 1, putative, expressed -
12 Sobic.002G396500 FAT domain-containing protein, putative, expressed K08874: transformation/transcription domain-associated protein
13 Sobic.001G426600 SH3 domain containing protein, expressed -
14 Sobic.008G118200 vesicle tethering family protein, putative, expressed -
15 Sobic.006G012500 protein transport protein Sec24-like, putative, expressed K14007: protein transport protein SEC24
16 Sobic.010G223100 PAP/25A associated domain containing protein, putative, expressed -
17 Sobic.006G224800 expressed protein -
18 Sobic.007G042400 HEAT repeat family protein, putative, expressed -
19 Sobic.004G072100 centromere/kinetochore protein zw10, putative, expressed K11578: ZW10, protein transport protein DSL1/ZW10
20 Sobic.002G071500 cleavage and polyadenylation specificity factor, putative, expressed K12830: SF3B3, SAP130, splicing factor 3B subunit 3


Gene co-expression network
sample Sobic004G051200 Sobic004G051200 Sobic003G072200 Sobic003G072200 Sobic004G051200--Sobic003G072200 Sobic006G037700 Sobic006G037700 Sobic004G051200--Sobic006G037700 Sobic001G287500 Sobic001G287500 Sobic004G051200--Sobic001G287500 Sobic003G233400 Sobic003G233400 Sobic004G051200--Sobic003G233400 Sobic007G098500 Sobic007G098500 Sobic004G051200--Sobic007G098500 Sobic008G099800 Sobic008G099800 Sobic004G051200--Sobic008G099800 Sobic001G065000 Sobic001G065000 Sobic004G051200--Sobic001G065000 Sobic010G275500 Sobic010G275500 Sobic004G051200--Sobic010G275500 Sobic001G347500 Sobic001G347500 Sobic004G051200--Sobic001G347500 Sobic002G397500 Sobic002G397500 Sobic003G072200--Sobic002G397500 Sobic003G072200--Sobic007G098500 Sobic007G062800 Sobic007G062800 Sobic003G072200--Sobic007G062800 Sobic003G072200--Sobic003G233400 Sobic009G084900 Sobic009G084900 Sobic003G072200--Sobic009G084900 Sobic008G098900 Sobic008G098900 Sobic003G072200--Sobic008G098900 Sobic005G112300 Sobic005G112300 Sobic003G072200--Sobic005G112300 Sobic003G072200--Sobic001G347500 Sobic002G133300 Sobic002G133300 Sobic003G072200--Sobic002G133300 Sobic006G037700--Sobic004G051200 Sobic006G037700--Sobic001G065000 Sobic006G037700--Sobic008G099800 Sobic006G037700--Sobic003G072200 Sobic006G037700--Sobic007G098500 Sobic006G035300 Sobic006G035300 Sobic006G037700--Sobic006G035300 Sobic001G050600 Sobic001G050600 Sobic006G037700--Sobic001G050600 Sobic003G259100 Sobic003G259100 Sobic006G037700--Sobic003G259100 Sobic001G058700 Sobic001G058700 Sobic006G037700--Sobic001G058700 Sobic001G287500--Sobic003G233400 Sobic001G287500--Sobic003G072200 Sobic001G287500--Sobic007G098500 Sobic001G287500--Sobic004G051200 Sobic008G092600 Sobic008G092600 Sobic001G287500--Sobic008G092600 Sobic001G287500--Sobic001G347500 Sobic001G426600 Sobic001G426600 Sobic001G287500--Sobic001G426600 Sobic004G040500 Sobic004G040500 Sobic001G287500--Sobic004G040500 Sobic004G204100 Sobic004G204100 Sobic001G287500--Sobic004G204100 Sobic003G233400--Sobic001G287500 Sobic003G233400--Sobic003G072200 Sobic003G233400--Sobic007G098500 Sobic001G137000 Sobic001G137000 Sobic003G233400--Sobic001G137000 Sobic003G312100 Sobic003G312100 Sobic003G233400--Sobic003G312100 Sobic003G233400--Sobic008G092600 Sobic002G396500 Sobic002G396500 Sobic003G233400--Sobic002G396500 Sobic002G179400 Sobic002G179400 Sobic003G233400--Sobic002G179400 Sobic003G233400--Sobic004G051200 Sobic007G098500--Sobic008G092600 Sobic007G098500--Sobic002G396500 Sobic010G105200 Sobic010G105200 Sobic007G098500--Sobic010G105200 Sobic007G098500--Sobic003G072200 Sobic007G098500--Sobic001G050600 Sobic007G098500--Sobic001G137000 Sobic007G098500--Sobic003G233400 Sobic007G098500--Sobic001G287500 Sobic006G265200 Sobic006G265200 Sobic007G098500--Sobic006G265200 Sobic006G012500 Sobic006G012500 Sobic008G099800--Sobic006G012500 Sobic001G534800 Sobic001G534800 Sobic008G099800--Sobic001G534800 Sobic004G135400 Sobic004G135400 Sobic008G099800--Sobic004G135400 Sobic008G099800--Sobic001G347500 Sobic001G281100 Sobic001G281100 Sobic008G099800--Sobic001G281100 Sobic004G113400 Sobic004G113400 Sobic008G099800--Sobic004G113400 Sobic004G039600 Sobic004G039600 Sobic008G099800--Sobic004G039600 Sobic008G099800--Sobic003G072200 Sobic008G099800--Sobic001G065000 Sobic001G114000 Sobic001G114000 Sobic001G065000--Sobic001G114000 Sobic001G065000--Sobic001G281100 Sobic001G065000--Sobic006G012500 Sobic001G065000--Sobic001G534800 Sobic005G118600 Sobic005G118600 Sobic001G065000--Sobic005G118600 Sobic001G065000--Sobic008G099800 Sobic003G093800 Sobic003G093800 Sobic001G065000--Sobic003G093800 Sobic001G065000--Sobic006G037700 Sobic003G229500 Sobic003G229500 Sobic001G065000--Sobic003G229500 Sobic010G053800 Sobic010G053800 Sobic010G275500--Sobic010G053800 Sobic004G072100 Sobic004G072100 Sobic010G275500--Sobic004G072100 Sobic010G275500--Sobic006G012500 Sobic001G155000 Sobic001G155000 Sobic010G275500--Sobic001G155000 Sobic010G116600 Sobic010G116600 Sobic010G275500--Sobic010G116600 Sobic010G069100 Sobic010G069100 Sobic010G275500--Sobic010G069100 Sobic009G119000 Sobic009G119000 Sobic010G275500--Sobic009G119000 Sobic007G183900 Sobic007G183900 Sobic010G275500--Sobic007G183900 Sobic010G275500--Sobic002G397500 Sobic001G347500--Sobic003G072200 Sobic001G347500--Sobic008G099800 Sobic001G347500--Sobic003G229500 Sobic001G347500--Sobic009G084900 Sobic001G273700 Sobic001G273700 Sobic001G347500--Sobic001G273700 Sobic001G347500--Sobic001G534800 Sobic001G347500--Sobic006G012500 Sobic001G347500--Sobic010G275500 Sobic001G347500--Sobic007G098500
Octagon: transcription factors


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