Gene annotation
Transcriptome id Sobic.006G037700.1
Synonym
Functional annotation phosphoribulokinase/Uridine kinase family protein, expressed
UniProt A0A1Z5RC01
Pfam PF00485
Panther DB PTHR10285 PTHR10285:SF53
NCBI CDD KOG4203; Armadillo/beta-Catenin/plakoglobin
KEGG Orthology -
Gene Ontology GO:0016301; kinase activity GO:0008152metabolic process GO:0005524ATP binding


Orthologs (automatic annotation)
TAIR AT2G01460 : P-loop containing nucleoside triphosphate hydrolases superfamily protein
RAP-DB (Rice) LOC_Os04g21110.1 : phosphoribulokinase/Uridine kinase family protein, expressed
MaizeGDB (Corn) Zm00025a055742
Brachypodium PNT60790 , PNT60791 , KQJ82026 , KQJ82027 , PNT60789 , KQJ82025
Barley HORVU2Hr1G065270.29 , HORVU2Hr1G065270.28 , HORVU2Hr1G065270.21 , HORVU2Hr1G065270.20 , HORVU2Hr1G065270.23 , HORVU2Hr1G065270.22 , HORVU2Hr1G065270.25 , HORVU2Hr1G065270.24 , HORVU2Hr1G065270.27 , HORVU2Hr1G065270.26 , HORVU2Hr1G065270.8 , HORVU2Hr1G065270.9 , HORVU2Hr1G065270.6 , HORVU2Hr1G065270.7 , HORVU2Hr1G065270.4 , HORVU2Hr1G065270.5 , HORVU2Hr1G065270.2 , HORVU2Hr1G065270.3 , HORVU2Hr1G065270.1 , HORVU2Hr1G065270.38 , HORVU2Hr1G065270.39 , HORVU2Hr1G065270.36 , HORVU2Hr1G065270.37 , HORVU2Hr1G065270.34 , HORVU2Hr1G065270.35 , HORVU2Hr1G065270.30 , HORVU2Hr1G065270.40 , HORVU2Hr1G065270.14 , HORVU2Hr1G065270.15 , HORVU2Hr1G065270.16 , HORVU2Hr1G065270.17 , HORVU2Hr1G065270.10 , HORVU2Hr1G065270.11 , HORVU2Hr1G065270.12 , HORVU2Hr1G065270.13 , HORVU2Hr1G065270.18 , HORVU2Hr1G065270.19
Wheat TraesCS2A02G269100 , TraesCS2A02G269100 , TraesCS2A02G269100 , TraesCS2A02G269100 , TraesCS2D02G268100 , TraesCS2B02G287900
Populus -


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cDNA sequences
Sobic.006G037700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G051200 WD domain containing protein, putative, expressed -
2 Sobic.001G065000 expressed protein -
3 Sobic.008G099800 expressed protein -
4 Sobic.003G072200 zinc finger protein, putative, expressed K11978: E3 ubiquitin-protein ligase UBR3
5 Sobic.007G098500 BIG, putative, expressed K10691: UBR4, E3 ubiquitin-protein ligase UBR4
6 Sobic.006G035300 expressed protein -
7 Sobic.001G050600 expressed protein -
8 Sobic.003G259100 GPI transamidase component family protein, putative, expressed K05289: GPI-anchor transamidase subunit GAA1
9 Sobic.001G058700 XRN 5\'-3\' exonuclease N-terminus domain containing protein, expressed K12619: XRN2, 5'-3' exoribonuclease 2
10 Sobic.006G012500 protein transport protein Sec24-like, putative, expressed K14007: protein transport protein SEC24
11 Sobic.002G071500 cleavage and polyadenylation specificity factor, putative, expressed K12830: SF3B3, SAP130, splicing factor 3B subunit 3
12 Sobic.001G137000 aberrant pollen transmission 1, putative, expressed -
13 Sobic.009G148300 expressed protein -
14 Sobic.007G172400 AAA-type ATPase family protein, putative, expressed K13338: peroxin-1
15 Sobic.001G534800 Putative ortholog gene associated with awn presence/absence in wheat(PubMedID : 25237112)@adapitin protein, putative, expressed K11824: AP-2 complex subunit alpha
16 Sobic.001G114000 expressed protein -
17 Sobic.001G263600 ubiquitin carboxyl-terminal hydrolase 5, putative, expressed K11835: USP4_11, ubiquitin carboxyl-terminal hydrolase 4/11
18 Sobic.008G092600 ubiquitin-protein ligase 1, putative, expressed K10592: HUWE1, MULE, E3 ubiquitin-protein ligase HUWE1
19 Sobic.001G219900 expressed protein -
20 Sobic.004G113400 cyclic nucleotide-gated ion channel 1, putative, expressed K05391: cyclic nucleotide gated channel, plant


Gene co-expression network
sample Sobic006G037700 Sobic006G037700 Sobic004G051200 Sobic004G051200 Sobic006G037700--Sobic004G051200 Sobic001G065000 Sobic001G065000 Sobic006G037700--Sobic001G065000 Sobic008G099800 Sobic008G099800 Sobic006G037700--Sobic008G099800 Sobic003G072200 Sobic003G072200 Sobic006G037700--Sobic003G072200 Sobic007G098500 Sobic007G098500 Sobic006G037700--Sobic007G098500 Sobic006G035300 Sobic006G035300 Sobic006G037700--Sobic006G035300 Sobic001G050600 Sobic001G050600 Sobic006G037700--Sobic001G050600 Sobic003G259100 Sobic003G259100 Sobic006G037700--Sobic003G259100 Sobic001G058700 Sobic001G058700 Sobic006G037700--Sobic001G058700 Sobic004G051200--Sobic003G072200 Sobic004G051200--Sobic006G037700 Sobic001G287500 Sobic001G287500 Sobic004G051200--Sobic001G287500 Sobic003G233400 Sobic003G233400 Sobic004G051200--Sobic003G233400 Sobic004G051200--Sobic007G098500 Sobic004G051200--Sobic008G099800 Sobic004G051200--Sobic001G065000 Sobic010G275500 Sobic010G275500 Sobic004G051200--Sobic010G275500 Sobic001G347500 Sobic001G347500 Sobic004G051200--Sobic001G347500 Sobic001G114000 Sobic001G114000 Sobic001G065000--Sobic001G114000 Sobic001G281100 Sobic001G281100 Sobic001G065000--Sobic001G281100 Sobic006G012500 Sobic006G012500 Sobic001G065000--Sobic006G012500 Sobic001G534800 Sobic001G534800 Sobic001G065000--Sobic001G534800 Sobic005G118600 Sobic005G118600 Sobic001G065000--Sobic005G118600 Sobic001G065000--Sobic008G099800 Sobic003G093800 Sobic003G093800 Sobic001G065000--Sobic003G093800 Sobic001G065000--Sobic006G037700 Sobic003G229500 Sobic003G229500 Sobic001G065000--Sobic003G229500 Sobic008G099800--Sobic006G012500 Sobic008G099800--Sobic001G534800 Sobic004G135400 Sobic004G135400 Sobic008G099800--Sobic004G135400 Sobic008G099800--Sobic001G347500 Sobic008G099800--Sobic001G281100 Sobic004G113400 Sobic004G113400 Sobic008G099800--Sobic004G113400 Sobic004G039600 Sobic004G039600 Sobic008G099800--Sobic004G039600 Sobic008G099800--Sobic003G072200 Sobic008G099800--Sobic001G065000 Sobic002G397500 Sobic002G397500 Sobic003G072200--Sobic002G397500 Sobic003G072200--Sobic007G098500 Sobic007G062800 Sobic007G062800 Sobic003G072200--Sobic007G062800 Sobic003G072200--Sobic003G233400 Sobic009G084900 Sobic009G084900 Sobic003G072200--Sobic009G084900 Sobic008G098900 Sobic008G098900 Sobic003G072200--Sobic008G098900 Sobic005G112300 Sobic005G112300 Sobic003G072200--Sobic005G112300 Sobic003G072200--Sobic001G347500 Sobic002G133300 Sobic002G133300 Sobic003G072200--Sobic002G133300 Sobic008G092600 Sobic008G092600 Sobic007G098500--Sobic008G092600 Sobic002G396500 Sobic002G396500 Sobic007G098500--Sobic002G396500 Sobic010G105200 Sobic010G105200 Sobic007G098500--Sobic010G105200 Sobic007G098500--Sobic003G072200 Sobic007G098500--Sobic001G050600 Sobic001G137000 Sobic001G137000 Sobic007G098500--Sobic001G137000 Sobic007G098500--Sobic003G233400 Sobic007G098500--Sobic001G287500 Sobic006G265200 Sobic006G265200 Sobic007G098500--Sobic006G265200 Sobic006G035300--Sobic006G037700 Sobic002G071500 Sobic002G071500 Sobic006G035300--Sobic002G071500 Sobic006G035300--Sobic005G118600 Sobic003G059750 Sobic003G059750 Sobic006G035300--Sobic003G059750 Sobic006G035300--Sobic001G065000 Sobic008G153000 Sobic008G153000 Sobic006G035300--Sobic008G153000 Sobic006G035300--Sobic006G012500 Sobic001G109800 Sobic001G109800 Sobic006G035300--Sobic001G109800 Sobic003G147000 Sobic003G147000 Sobic006G035300--Sobic003G147000 Sobic001G050600--Sobic007G098500 Sobic001G037100 Sobic001G037100 Sobic001G050600--Sobic001G037100 Sobic001G050600--Sobic001G058700 Sobic001G219900 Sobic001G219900 Sobic001G050600--Sobic001G219900 Sobic007G172400 Sobic007G172400 Sobic001G050600--Sobic007G172400 Sobic001G050600--Sobic001G137000 Sobic001G280900 Sobic001G280900 Sobic001G050600--Sobic001G280900 Sobic001G050600--Sobic008G092600 Sobic001G050600--Sobic003G259100 Sobic003G259100--Sobic004G113400 Sobic003G259100--Sobic008G099800 Sobic003G259100--Sobic001G050600 Sobic003G259100--Sobic003G072200 Sobic001G273700 Sobic001G273700 Sobic003G259100--Sobic001G273700 Sobic003G259100--Sobic001G058700 Sobic003G259100--Sobic001G347500 Sobic003G259100--Sobic001G219900 Sobic010G034000 Sobic010G034000 Sobic003G259100--Sobic010G034000 Sobic003G408600 Sobic003G408600 Sobic001G058700--Sobic003G408600 Sobic001G058700--Sobic007G172400 Sobic001G058700--Sobic001G050600 Sobic001G058700--Sobic007G062800 Sobic001G540400 Sobic001G540400 Sobic001G058700--Sobic001G540400 Sobic005G008800 Sobic005G008800 Sobic001G058700--Sobic005G008800 Sobic004G347400 Sobic004G347400 Sobic001G058700--Sobic004G347400 Sobic005G028600 Sobic005G028600 Sobic001G058700--Sobic005G028600 Sobic001G058700--Sobic001G219900
Octagon: transcription factors


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