Gene annotation
Transcriptome id Sobic.003G259100.2,Sobic.003G259100.1
Synonym Sb03g031330
Functional annotation GPI transamidase component family protein, putative, expressed
UniProt A0A1B6Q5D9 , A0A1B6Q5H6
Pfam PF04114
Panther DB PTHR13304 PTHR13304:SF0
NCBI CDD KOG3566; Glycosylphosphatidylinositol anchor attachment protein GAA1
KEGG Orthology K05289; GPI-anchor transamidase subunit GAA1
Gene Ontology GO:0016021; integral component of membrane


Orthologs (automatic annotation)
TAIR AT5G19130 : GPI transamidase component family protein / Gaa1-like family protein
RAP-DB (Rice) LOC_Os01g48980.1 : GPI transamidase component family protein, putative, expressed
MaizeGDB (Corn) Zm00025a028017
Brachypodium KQK14425 , KQK09209
Barley HORVU3Hr1G063250.3 , HORVU3Hr1G063250.2 , HORVU3Hr1G063250.1
Wheat TraesCS3B02G299400 , TraesCS3B02G299400 , TraesCS3A02G266100 , TraesCS3A02G266100 , TraesCS3D02G266200
Populus -


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cDNA sequences
Sobic.003G259100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G113400 cyclic nucleotide-gated ion channel 1, putative, expressed K05391: cyclic nucleotide gated channel, plant
2 Sobic.008G099800 expressed protein -
3 Sobic.001G050600 expressed protein -
4 Sobic.003G072200 zinc finger protein, putative, expressed K11978: E3 ubiquitin-protein ligase UBR3
5 Sobic.001G273700 tRNA-splicing endonuclease positive effector-related, putative, expressed K10706: SETX, senataxin
6 Sobic.001G058700 XRN 5\'-3\' exonuclease N-terminus domain containing protein, expressed K12619: XRN2, 5'-3' exoribonuclease 2
7 Sobic.001G347500 expressed protein -
8 Sobic.001G219900 expressed protein -
9 Sobic.010G034000 zinc carboxypeptidase family protein, putative, expressed K07752: carboxypeptidase D
10 Sobic.007G172400 AAA-type ATPase family protein, putative, expressed K13338: peroxin-1
11 Sobic.003G408600 GYF domain containing protein, putative, expressed K18730: PERQ amino acid-rich with GYF domain-containing protein
12 Sobic.001G534800 Putative ortholog gene associated with awn presence/absence in wheat(PubMedID : 25237112)@adapitin protein, putative, expressed K11824: AP-2 complex subunit alpha
13 Sobic.001G137000 aberrant pollen transmission 1, putative, expressed -
14 Sobic.006G037700 phosphoribulokinase/Uridine kinase family protein, expressed -
15 Sobic.003G229500 ZOS12-01 - C2H2 zinc finger protein, expressed -
16 Sobic.001G065000 expressed protein -
17 Sobic.003G312100 guanine nucleotide exchange family protein, putative, expressed -
18 Sobic.009G010600 retinoblastoma-related protein-like, putative, expressed K04681: retinoblastoma-like protein 1
19 Sobic.007G163100 expressed protein K14972: PAXIP1, PAX-interacting protein 1
20 Sobic.005G001000 RNA recognition motif containing protein, putative, expressed K10643: CNOT4, NOT4, CCR4-NOT transcription complex subunit 4


Gene co-expression network
sample Sobic003G259100 Sobic003G259100 Sobic004G113400 Sobic004G113400 Sobic003G259100--Sobic004G113400 Sobic008G099800 Sobic008G099800 Sobic003G259100--Sobic008G099800 Sobic001G050600 Sobic001G050600 Sobic003G259100--Sobic001G050600 Sobic003G072200 Sobic003G072200 Sobic003G259100--Sobic003G072200 Sobic001G273700 Sobic001G273700 Sobic003G259100--Sobic001G273700 Sobic001G058700 Sobic001G058700 Sobic003G259100--Sobic001G058700 Sobic001G347500 Sobic001G347500 Sobic003G259100--Sobic001G347500 Sobic001G219900 Sobic001G219900 Sobic003G259100--Sobic001G219900 Sobic010G034000 Sobic010G034000 Sobic003G259100--Sobic010G034000 Sobic009G010600 Sobic009G010600 Sobic004G113400--Sobic009G010600 Sobic003G408600 Sobic003G408600 Sobic004G113400--Sobic003G408600 Sobic004G329400 Sobic004G329400 Sobic004G113400--Sobic004G329400 Sobic004G113400--Sobic001G058700 Sobic004G113400--Sobic008G099800 Sobic001G178700 Sobic001G178700 Sobic004G113400--Sobic001G178700 Sobic001G117200 Sobic001G117200 Sobic004G113400--Sobic001G117200 Sobic001G534800 Sobic001G534800 Sobic004G113400--Sobic001G534800 Sobic002G430000 Sobic002G430000 Sobic004G113400--Sobic002G430000 Sobic006G012500 Sobic006G012500 Sobic008G099800--Sobic006G012500 Sobic008G099800--Sobic001G534800 Sobic004G135400 Sobic004G135400 Sobic008G099800--Sobic004G135400 Sobic008G099800--Sobic001G347500 Sobic001G281100 Sobic001G281100 Sobic008G099800--Sobic001G281100 Sobic008G099800--Sobic004G113400 Sobic004G039600 Sobic004G039600 Sobic008G099800--Sobic004G039600 Sobic008G099800--Sobic003G072200 Sobic001G065000 Sobic001G065000 Sobic008G099800--Sobic001G065000 Sobic007G098500 Sobic007G098500 Sobic001G050600--Sobic007G098500 Sobic001G037100 Sobic001G037100 Sobic001G050600--Sobic001G037100 Sobic001G050600--Sobic001G058700 Sobic001G050600--Sobic001G219900 Sobic007G172400 Sobic007G172400 Sobic001G050600--Sobic007G172400 Sobic001G137000 Sobic001G137000 Sobic001G050600--Sobic001G137000 Sobic001G280900 Sobic001G280900 Sobic001G050600--Sobic001G280900 Sobic008G092600 Sobic008G092600 Sobic001G050600--Sobic008G092600 Sobic001G050600--Sobic003G259100 Sobic002G397500 Sobic002G397500 Sobic003G072200--Sobic002G397500 Sobic003G072200--Sobic007G098500 Sobic007G062800 Sobic007G062800 Sobic003G072200--Sobic007G062800 Sobic003G233400 Sobic003G233400 Sobic003G072200--Sobic003G233400 Sobic009G084900 Sobic009G084900 Sobic003G072200--Sobic009G084900 Sobic008G098900 Sobic008G098900 Sobic003G072200--Sobic008G098900 Sobic005G112300 Sobic005G112300 Sobic003G072200--Sobic005G112300 Sobic003G072200--Sobic001G347500 Sobic002G133300 Sobic002G133300 Sobic003G072200--Sobic002G133300 Sobic007G172200 Sobic007G172200 Sobic001G273700--Sobic007G172200 Sobic001G263600 Sobic001G263600 Sobic001G273700--Sobic001G263600 Sobic001G273700--Sobic008G099800 Sobic001G273700--Sobic001G347500 Sobic007G133700 Sobic007G133700 Sobic001G273700--Sobic007G133700 Sobic007G163100 Sobic007G163100 Sobic001G273700--Sobic007G163100 Sobic001G457900 Sobic001G457900 Sobic001G273700--Sobic001G457900 Sobic001G313700 Sobic001G313700 Sobic001G273700--Sobic001G313700 Sobic002G042600 Sobic002G042600 Sobic001G273700--Sobic002G042600 Sobic001G058700--Sobic003G408600 Sobic001G058700--Sobic007G172400 Sobic001G058700--Sobic001G050600 Sobic001G058700--Sobic007G062800 Sobic001G540400 Sobic001G540400 Sobic001G058700--Sobic001G540400 Sobic005G008800 Sobic005G008800 Sobic001G058700--Sobic005G008800 Sobic004G347400 Sobic004G347400 Sobic001G058700--Sobic004G347400 Sobic005G028600 Sobic005G028600 Sobic001G058700--Sobic005G028600 Sobic001G058700--Sobic001G219900 Sobic001G347500--Sobic003G072200 Sobic001G347500--Sobic008G099800 Sobic003G229500 Sobic003G229500 Sobic001G347500--Sobic003G229500 Sobic001G347500--Sobic009G084900 Sobic001G347500--Sobic001G273700 Sobic001G347500--Sobic001G534800 Sobic001G347500--Sobic006G012500 Sobic010G275500 Sobic010G275500 Sobic001G347500--Sobic010G275500 Sobic001G347500--Sobic007G098500 Sobic001G219900--Sobic003G408600 Sobic002G071500 Sobic002G071500 Sobic001G219900--Sobic002G071500 Sobic004G223600 Sobic004G223600 Sobic001G219900--Sobic004G223600 Sobic001G219900--Sobic001G058700 Sobic001G219900--Sobic002G397500 Sobic001G219900--Sobic001G050600 Sobic010G001100 Sobic010G001100 Sobic001G219900--Sobic010G001100 Sobic009G119000 Sobic009G119000 Sobic001G219900--Sobic009G119000 Sobic008G009700 Sobic008G009700 Sobic001G219900--Sobic008G009700 Sobic010G034000--Sobic008G099800 Sobic007G041500 Sobic007G041500 Sobic010G034000--Sobic007G041500 Sobic010G034000--Sobic003G259100 Sobic010G034000--Sobic001G065000 Sobic010G116600 Sobic010G116600 Sobic010G034000--Sobic010G116600 Sobic004G277200 Sobic004G277200 Sobic010G034000--Sobic004G277200 Sobic003G093800 Sobic003G093800 Sobic010G034000--Sobic003G093800 Sobic010G034000--Sobic001G058700 Sobic010G034000--Sobic001G281100
Octagon: transcription factors


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