Gene annotation
Transcriptome id Sobic.001G299700.1,Sobic.001G299700.2
Synonym Sb01g029180
Functional annotation CCR4-Not complex component, Not1domain containing protein, expressed
UniProt A0A1B6QM02 , A0A1B6QLY4
Pfam PF16418 PF12842 PF16417 PF16415 PF04054
Panther DB PTHR13162 PTHR13162:SF9
NCBI CDD -
KEGG Orthology K12604; CNOT1, CCR4-NOT transcription complex subunit 1
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G02080 : transcription regulators
RAP-DB (Rice) LOC_Os10g40780.1 : CCR4-Not complex component, Not1domain containing protein, expressed
MaizeGDB (Corn) Zm00025a047157 , Zm00025a011477 , Zm00025a050774 , Zm00025a031823 , Zm00025a051975 , Zm00025a000101 , Zm00025a051527 , Zm00025a053586 , Zm00025a058042 , Zm00025a014838
Brachypodium PNT67874 , PNT67875 , PNT78393 , PNT78392 , PNT78395 , PNT67871 , PNT67872 , PNT67873 , PNT67869 , PNT67868 , KQJ97774 , KQJ97771 , KQJ97772 , KQJ97773 , PNT67870 , PNT78394
Barley HORVU1Hr1G054300.19 , HORVU1Hr1G054300.18 , HORVU1Hr1G054300.11 , HORVU1Hr1G054300.10 , HORVU1Hr1G054300.13 , HORVU1Hr1G054300.12 , HORVU1Hr1G054300.15 , HORVU1Hr1G054300.14 , HORVU1Hr1G054300.17 , HORVU1Hr1G054300.16 , HORVU4Hr1G088210.15 , HORVU4Hr1G088210.14 , HORVU4Hr1G088210.13 , HORVU4Hr1G088210.11 , HORVU4Hr1G088210.19 , HORVU1Hr1G054300.9 , HORVU1Hr1G054300.8 , HORVU1Hr1G054300.5 , HORVU1Hr1G054300.4 , HORVU1Hr1G054300.7 , HORVU1Hr1G054300.6 , HORVU1Hr1G054300.1 , HORVU1Hr1G054300.3 , HORVU1Hr1G054300.2 , HORVU4Hr1G088210.31 , HORVU4Hr1G088210.33 , HORVU4Hr1G088210.32 , HORVU4Hr1G088210.34 , HORVU4Hr1G088210.37 , HORVU4Hr1G088210.35 , HORVU4Hr1G088210.28 , HORVU4Hr1G088210.29 , HORVU4Hr1G088210.26 , HORVU4Hr1G088210.27 , HORVU4Hr1G088210.25 , HORVU4Hr1G088210.23 , HORVU4Hr1G088210.21 , HORVU1Hr1G054300.32 , HORVU1Hr1G054300.31 , HORVU1Hr1G054300.30 , HORVU4Hr1G088210.9 , HORVU4Hr1G088210.8 , HORVU4Hr1G088210.7 , HORVU4Hr1G088210.5 , HORVU4Hr1G088210.4 , HORVU4Hr1G088210.1 , HORVU1Hr1G054300.24 , HORVU1Hr1G054300.25 , HORVU1Hr1G054300.26 , HORVU1Hr1G054300.27 , HORVU1Hr1G054300.20 , HORVU1Hr1G054300.21 , HORVU1Hr1G054300.22 , HORVU1Hr1G054300.23 , HORVU1Hr1G054300.28 , HORVU1Hr1G054300.29
Wheat TraesCS5A02G538200 , TraesCS1A02G212800 , TraesCS1A02G212800 , TraesCS4B02G375100 , TraesCS1B02G226300 , TraesCS1B02G226300 , TraesCS4D02G362400 , TraesCS1D02G215700
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G542400 CCR4-Not complex component, Not1domain containing protein, expressed K12604: CNOT1, CCR4-NOT transcription complex subunit 1
2 Sobic.003G186000 WD domain, G-beta repeat domain containing protein, expressed -
3 Sobic.010G105200 SYD, putative, expressed -
4 Sobic.001G191700 expressed protein -
5 Sobic.009G109200 phosphatidylinositol kinase, putative, expressed K07203: MTOR, FRAP, serine/threonine-protein kinase mTOR
6 Sobic.005G008800 WD domain and HEAT domain containing protein, putative, expressed K07204: regulatory associated protein of mTOR
7 Sobic.008G001200 RNA recognition motif containing protein, putative, expressed -
8 Sobic.007G062800 SET domain containing protein, expressed -
9 Sobic.006G040500 phospholipid-transporting ATPase 2, putative, expressed K01530: phospholipid-translocating ATPase
10 Sobic.004G276400 expressed protein K11320: E1A-binding protein p400
11 Sobic.001G400500 calpain, putative, expressed -
12 Sobic.003G408600 GYF domain containing protein, putative, expressed K18730: PERQ amino acid-rich with GYF domain-containing protein
13 Sobic.002G308700 expressed protein K11643: CHD4, chromodomain-helicase-DNA-binding protein 4
14 Sobic.005G112300 ubiquitin carboxyl-terminal hydrolase 5, putative, expressed K11835: USP4_11, ubiquitin carboxyl-terminal hydrolase 4/11
15 Sobic.001G433800 lissencephaly type-1-like homology motif, putative, expressed -
16 Sobic.010G112100 transcription factor jumonji, putative, expressed K11446: KDM5, [histone H3]-trimethyl-L-lysine4 demethylase
17 Sobic.003G205200 expressed protein K19027: zinc finger FYVE domain-containing protein 26
18 Sobic.005G162500 ubiquitin carboxyl-terminal hydrolase, putative, expressed K11838: USP7, ubiquitin carboxyl-terminal hydrolase 7
19 Sobic.010G010700 PHD-finger family protein, expressed -
20 Sobic.002G071500 cleavage and polyadenylation specificity factor, putative, expressed K12830: SF3B3, SAP130, splicing factor 3B subunit 3


Gene co-expression network
sample Sobic001G299700 Sobic001G299700 Sobic001G542400 Sobic001G542400 Sobic001G299700--Sobic001G542400 Sobic003G186000 Sobic003G186000 Sobic001G299700--Sobic003G186000 Sobic010G105200 Sobic010G105200 Sobic001G299700--Sobic010G105200 Sobic001G191700 Sobic001G191700 Sobic001G299700--Sobic001G191700 Sobic009G109200 Sobic009G109200 Sobic001G299700--Sobic009G109200 Sobic005G008800 Sobic005G008800 Sobic001G299700--Sobic005G008800 Sobic008G001200 Sobic008G001200 Sobic001G299700--Sobic008G001200 Sobic007G062800 Sobic007G062800 Sobic001G299700--Sobic007G062800 Sobic006G040500 Sobic006G040500 Sobic001G299700--Sobic006G040500 Sobic001G542400--Sobic001G299700 Sobic001G542400--Sobic009G109200 Sobic001G400500 Sobic001G400500 Sobic001G542400--Sobic001G400500 Sobic009G256300 Sobic009G256300 Sobic001G542400--Sobic009G256300 Sobic010G112100 Sobic010G112100 Sobic001G542400--Sobic010G112100 Sobic004G276400 Sobic004G276400 Sobic001G542400--Sobic004G276400 Sobic001G542400--Sobic010G105200 Sobic001G542400--Sobic005G008800 Sobic001G542400--Sobic008G001200 Sobic003G186000--Sobic004G276400 Sobic003G186000--Sobic010G105200 Sobic010G010700 Sobic010G010700 Sobic003G186000--Sobic010G010700 Sobic005G001000 Sobic005G001000 Sobic003G186000--Sobic005G001000 Sobic003G205200 Sobic003G205200 Sobic003G186000--Sobic003G205200 Sobic001G194200 Sobic001G194200 Sobic003G186000--Sobic001G194200 Sobic003G186000--Sobic007G062800 Sobic003G186000--Sobic008G001200 Sobic007G103100 Sobic007G103100 Sobic003G186000--Sobic007G103100 Sobic010G105200--Sobic004G276400 Sobic010G105200--Sobic009G109200 Sobic010G105200--Sobic003G186000 Sobic007G098500 Sobic007G098500 Sobic010G105200--Sobic007G098500 Sobic004G242400 Sobic004G242400 Sobic010G105200--Sobic004G242400 Sobic004G034900 Sobic004G034900 Sobic010G105200--Sobic004G034900 Sobic010G105200--Sobic007G062800 Sobic010G105200--Sobic005G008800 Sobic010G105200--Sobic010G010700 Sobic001G191700--Sobic001G299700 Sobic001G191700--Sobic001G542400 Sobic001G004400 Sobic001G004400 Sobic001G191700--Sobic001G004400 Sobic005G162500 Sobic005G162500 Sobic001G191700--Sobic005G162500 Sobic001G191700--Sobic001G400500 Sobic001G191700--Sobic009G109200 Sobic004G248600 Sobic004G248600 Sobic001G191700--Sobic004G248600 Sobic006G032300 Sobic006G032300 Sobic001G191700--Sobic006G032300 Sobic001G117200 Sobic001G117200 Sobic001G191700--Sobic001G117200 Sobic009G109200--Sobic010G105200 Sobic009G109200--Sobic004G242400 Sobic002G397500 Sobic002G397500 Sobic009G109200--Sobic002G397500 Sobic009G109200--Sobic001G542400 Sobic001G540400 Sobic001G540400 Sobic009G109200--Sobic001G540400 Sobic009G109200--Sobic005G008800 Sobic009G109200--Sobic004G276400 Sobic003G408600 Sobic003G408600 Sobic009G109200--Sobic003G408600 Sobic009G109200--Sobic010G112100 Sobic005G008800--Sobic001G540400 Sobic005G008800--Sobic003G408600 Sobic005G112300 Sobic005G112300 Sobic005G008800--Sobic005G112300 Sobic005G008800--Sobic007G062800 Sobic001G289600 Sobic001G289600 Sobic005G008800--Sobic001G289600 Sobic004G314000 Sobic004G314000 Sobic005G008800--Sobic004G314000 Sobic008G009700 Sobic008G009700 Sobic005G008800--Sobic008G009700 Sobic001G289800 Sobic001G289800 Sobic005G008800--Sobic001G289800 Sobic005G008800--Sobic009G109200 Sobic003G155100 Sobic003G155100 Sobic008G001200--Sobic003G155100 Sobic010G206900 Sobic010G206900 Sobic008G001200--Sobic010G206900 Sobic009G256400 Sobic009G256400 Sobic008G001200--Sobic009G256400 Sobic008G001200--Sobic003G205200 Sobic008G001200--Sobic010G010700 Sobic008G001200--Sobic001G194200 Sobic008G001200--Sobic005G001000 Sobic008G001200--Sobic004G276400 Sobic004G174200 Sobic004G174200 Sobic008G001200--Sobic004G174200 Sobic007G062800--Sobic001G540400 Sobic007G062800--Sobic005G112300 Sobic002G405800 Sobic002G405800 Sobic007G062800--Sobic002G405800 Sobic002G008900 Sobic002G008900 Sobic007G062800--Sobic002G008900 Sobic007G062800--Sobic010G010700 Sobic007G062800--Sobic004G242400 Sobic007G062800--Sobic004G034900 Sobic007G062800--Sobic004G276400 Sobic007G062800--Sobic002G397500 Sobic006G040500--Sobic003G186000 Sobic006G040500--Sobic005G001000 Sobic006G040500--Sobic007G062800 Sobic006G040500--Sobic005G112300 Sobic006G040500--Sobic010G010700 Sobic006G040500--Sobic002G008900 Sobic006G040500--Sobic009G256400 Sobic010G123600 Sobic010G123600 Sobic006G040500--Sobic010G123600 Sobic006G040500--Sobic004G276400
Octagon: transcription factors


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