Gene annotation
Transcriptome id Sobic.001G275300.1,Sobic.001G275300.2
Synonym Sb01g027020, MED34, RECQL2, ATRECQ2
Functional annotation -
UniProt A0A1B6QLG7 , A0A1B6QLH9
Pfam PF00570 PF16124 PF00271 PF00270
Panther DB PTHR13710 PTHR13710:SF72
NCBI CDD -
KEGG Orthology K10899; ATP-dependent DNA helicase Q1
Gene Ontology GO:0005622; intracellular GO:0003676nucleic acid binding GO:0005524ATP binding


Orthologs (automatic annotation)
TAIR AT1G31360 : RECQ helicase L2
RAP-DB (Rice) LOC_Os11g48090.5 : helicase conserved C-terminal domain containing protein, expressed
MaizeGDB (Corn) Zm00025a003842
Brachypodium PNT78137 , PNT78136 , KQK23510 , KQK23511 , KQK23512 , KQK23509 , KQK23508
Barley -
Wheat TraesCS4A02G178600 , TraesCS4A02G178600 , TraesCS4A02G178600 , TraesCS4A02G178600 , TraesCS4A02G178600 , TraesCS4B02G138800 , TraesCS4D02G133500
Populus -


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cDNA sequences
Sobic.001G275300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G088200 nonsense-mediated decay UPF3, putative, expressed K14328: UPF3, regulator of nonsense transcripts 3
2 Sobic.003G214600 transcriptional corepressor LEUNIG, putative, expressed -
3 Sobic.007G000300 expressed protein -
4 Sobic.003G095900 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K14442: DHX36, ATP-dependent RNA helicase DHX36
5 Sobic.006G056700 tRNA nucleotidyltransferase/polyA polymerase family protein, putative, expressed -
6 Sobic.004G158400 AML1, putative, expressed -
7 Sobic.001G058200 PPR repeat domain containing protein, putative, expressed -
8 Sobic.007G159900 ubiquitin carboxyl-terminal hydrolase family protein, expressed K11855: ubiquitin carboxyl-terminal hydrolase 36/42
9 Sobic.005G167700 protein phosphatase 2C, putative, expressed -
10 Sobic.001G151100 CCR4-NOT transcription factor, putative, expressed K12580: CNOT3, CCR4-NOT transcription complex subunit 3
11 Sobic.009G129100 preprotein translocase subunit secY, putative, expressed -
12 Sobic.001G384300 myb-like DNA-binding domain containing protein, expressed -
13 Sobic.003G188400 glutamate dehydrogenase protein, putative, expressed K00262: E1.4.1.4, glutamate dehydrogenase (NADP+)
14 Sobic.006G096900 expressed protein -
15 Sobic.009G256300 DNA binding protein, putative, expressed -
16 Sobic.003G241700 SET domain containing protein, expressed -
17 Sobic.001G542400 CCR4-Not complex component, Not1domain containing protein, expressed K12604: CNOT1, CCR4-NOT transcription complex subunit 1
18 Sobic.001G455600 cysteine synthase, putative, expressed K01738: cysteine synthase
19 Sobic.008G063300 exonuclease, putative, expressed K14570: REX1, REXO1, RNA exonuclease 1
20 Sobic.003G168100 BZIP protein, putative, expressed -


Gene co-expression network
sample Sobic001G275300 Sobic001G275300 Sobic006G088200 Sobic006G088200 Sobic001G275300--Sobic006G088200 Sobic003G214600 Sobic003G214600 Sobic001G275300--Sobic003G214600 Sobic007G000300 Sobic007G000300 Sobic001G275300--Sobic007G000300 Sobic003G095900 Sobic003G095900 Sobic001G275300--Sobic003G095900 Sobic006G056700 Sobic006G056700 Sobic001G275300--Sobic006G056700 Sobic004G158400 Sobic004G158400 Sobic001G275300--Sobic004G158400 Sobic001G058200 Sobic001G058200 Sobic001G275300--Sobic001G058200 Sobic007G159900 Sobic007G159900 Sobic001G275300--Sobic007G159900 Sobic005G167700 Sobic005G167700 Sobic001G275300--Sobic005G167700 Sobic006G088200--Sobic003G095900 Sobic003G360400 Sobic003G360400 Sobic006G088200--Sobic003G360400 Sobic001G493700 Sobic001G493700 Sobic006G088200--Sobic001G493700 Sobic006G088200--Sobic001G275300 Sobic002G133300 Sobic002G133300 Sobic006G088200--Sobic002G133300 Sobic003G379200 Sobic003G379200 Sobic006G088200--Sobic003G379200 Sobic006G088200--Sobic003G214600 Sobic001G433800 Sobic001G433800 Sobic006G088200--Sobic001G433800 Sobic001G227400 Sobic001G227400 Sobic006G088200--Sobic001G227400 Sobic005G200800 Sobic005G200800 Sobic003G214600--Sobic005G200800 Sobic002G029100 Sobic002G029100 Sobic003G214600--Sobic002G029100 Sobic003G214600--Sobic006G088200 Sobic003G408600 Sobic003G408600 Sobic003G214600--Sobic003G408600 Sobic009G255600 Sobic009G255600 Sobic003G214600--Sobic009G255600 Sobic005G008800 Sobic005G008800 Sobic003G214600--Sobic005G008800 Sobic007G183300 Sobic007G183300 Sobic003G214600--Sobic007G183300 Sobic007G163100 Sobic007G163100 Sobic003G214600--Sobic007G163100 Sobic003G214600--Sobic003G360400 Sobic007G000300--Sobic001G275300 Sobic003G241700 Sobic003G241700 Sobic007G000300--Sobic003G241700 Sobic001G393900 Sobic001G393900 Sobic007G000300--Sobic001G393900 Sobic007G000300--Sobic006G088200 Sobic003G062300 Sobic003G062300 Sobic007G000300--Sobic003G062300 Sobic003G016900 Sobic003G016900 Sobic007G000300--Sobic003G016900 Sobic001G261900 Sobic001G261900 Sobic007G000300--Sobic001G261900 Sobic007G212300 Sobic007G212300 Sobic007G000300--Sobic007G212300 Sobic007G173500 Sobic007G173500 Sobic007G000300--Sobic007G173500 Sobic004G242400 Sobic004G242400 Sobic003G095900--Sobic004G242400 Sobic003G095900--Sobic001G433800 Sobic003G095900--Sobic002G133300 Sobic001G089600 Sobic001G089600 Sobic003G095900--Sobic001G089600 Sobic003G095900--Sobic006G088200 Sobic003G095900--Sobic003G360400 Sobic009G256400 Sobic009G256400 Sobic003G095900--Sobic009G256400 Sobic004G276400 Sobic004G276400 Sobic003G095900--Sobic004G276400 Sobic001G289800 Sobic001G289800 Sobic003G095900--Sobic001G289800 Sobic006G096900 Sobic006G096900 Sobic006G056700--Sobic006G096900 Sobic001G456300 Sobic001G456300 Sobic006G056700--Sobic001G456300 Sobic010G237900 Sobic010G237900 Sobic006G056700--Sobic010G237900 Sobic006G056700--Sobic001G275300 Sobic008G063300 Sobic008G063300 Sobic006G056700--Sobic008G063300 Sobic002G170200 Sobic002G170200 Sobic006G056700--Sobic002G170200 Sobic004G131800 Sobic004G131800 Sobic006G056700--Sobic004G131800 Sobic006G056700--Sobic007G159900 Sobic006G056700--Sobic003G360400 Sobic004G158400--Sobic007G159900 Sobic004G158400--Sobic005G167700 Sobic001G261492 Sobic001G261492 Sobic004G158400--Sobic001G261492 Sobic004G158400--Sobic003G360400 Sobic007G105100 Sobic007G105100 Sobic004G158400--Sobic007G105100 Sobic010G112100 Sobic010G112100 Sobic004G158400--Sobic010G112100 Sobic004G158400--Sobic001G433800 Sobic005G112300 Sobic005G112300 Sobic004G158400--Sobic005G112300 Sobic003G188400 Sobic003G188400 Sobic004G158400--Sobic003G188400 Sobic001G151100 Sobic001G151100 Sobic001G058200--Sobic001G151100 Sobic005G162500 Sobic005G162500 Sobic001G058200--Sobic005G162500 Sobic001G542400 Sobic001G542400 Sobic001G058200--Sobic001G542400 Sobic001G058200--Sobic002G133300 Sobic008G082500 Sobic008G082500 Sobic001G058200--Sobic008G082500 Sobic004G131300 Sobic004G131300 Sobic001G058200--Sobic004G131300 Sobic004G248600 Sobic004G248600 Sobic001G058200--Sobic004G248600 Sobic001G058200--Sobic003G214600 Sobic001G087600 Sobic001G087600 Sobic001G058200--Sobic001G087600 Sobic007G159900--Sobic003G360400 Sobic007G159900--Sobic004G158400 Sobic002G366400 Sobic002G366400 Sobic007G159900--Sobic002G366400 Sobic007G159900--Sobic010G112100 Sobic007G183900 Sobic007G183900 Sobic007G159900--Sobic007G183900 Sobic005G064000 Sobic005G064000 Sobic007G159900--Sobic005G064000 Sobic005G100700 Sobic005G100700 Sobic007G159900--Sobic005G100700 Sobic007G159900--Sobic003G188400 Sobic008G113100 Sobic008G113100 Sobic007G159900--Sobic008G113100 Sobic010G123600 Sobic010G123600 Sobic005G167700--Sobic010G123600 Sobic003G441900 Sobic003G441900 Sobic005G167700--Sobic003G441900 Sobic005G167700--Sobic001G433800 Sobic003G168100 Sobic003G168100 Sobic005G167700--Sobic003G168100 Sobic005G167700--Sobic001G151100 Sobic005G167700--Sobic004G158400 Sobic005G167700--Sobic003G188400 Sobic010G126000 Sobic010G126000 Sobic005G167700--Sobic010G126000 Sobic005G167700--Sobic003G360400
Octagon: transcription factors


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