Gene annotation
Transcriptome id Sobic.003G241700.2
Synonym Sb03g029850, ATX4, SDG16
Functional annotation SET domain containing protein, expressed
UniProt A0A1W0VYQ6
Pfam PF13831 PF00855 PF00856 PF13832
Panther DB PTHR13793 PTHR13793:SF102
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT4G27910 : SET domain protein 16
RAP-DB (Rice) LOC_Os01g46700.1 : SET domain containing protein, expressed
MaizeGDB (Corn) Zm00025a038697
Brachypodium KQK09005
Barley HORVU3Hr1G059080.9 , HORVU3Hr1G059080.8 , HORVU3Hr1G059080.7 , HORVU3Hr1G059080.6 , HORVU3Hr1G059080.5 , HORVU3Hr1G059080.4 , HORVU3Hr1G059080.3 , HORVU3Hr1G059080.2 , HORVU3Hr1G059080.1 , HORVU3Hr1G059080.14 , HORVU3Hr1G059080.13 , HORVU3Hr1G059080.12 , HORVU3Hr1G059080.11 , HORVU3Hr1G059080.10
Wheat TraesCS3A02G237200 , TraesCS3D02G237600 , TraesCS3D02G237600 , TraesCS3A02G237200 , TraesCS3B02G265800
Populus -


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cDNA sequences
Sobic.003G241700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G043000 expressed protein -
2 Sobic.003G296900 expressed protein -
3 Sobic.009G228000 ubiquitin-conjugating enzyme domain containing protein, expressed K10581: ubiquitin-conjugating enzyme E2 O
4 Sobic.004G209700 FAR1 family protein, expressed -
5 Sobic.004G265500 SET domain protein SDG117, putative, expressed -
6 Sobic.010G000800 PHD-finger domain containing protein, expressed -
7 Sobic.006G234700 FGGY family of carbohydrate kinases, putative, expressed -
8 Sobic.004G213800 expressed protein -
9 Sobic.010G034100 GTP-binding protein GUF1, putative, expressed -
10 Sobic.007G000300 expressed protein -
11 Sobic.003G163200 expressed protein K11654: SMARCA5, SNF2H, SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5
12 Sobic.006G184900 tetratricopeptide repeat domain containing protein, expressed K15176: RNA polymerase-associated protein CTR9
13 Sobic.003G095900 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K14442: DHX36, ATP-dependent RNA helicase DHX36
14 Sobic.001G275300 - K10899: ATP-dependent DNA helicase Q1
15 Sobic.008G033900 PHD-finger family protein, expressed -
16 Sobic.010G226000 expressed protein -
17 Sobic.006G088200 nonsense-mediated decay UPF3, putative, expressed K14328: UPF3, regulator of nonsense transcripts 3
18 Sobic.004G130300 phosphatidylinositol 3- and 4-kinase family protein, putative, expressed -
19 Sobic.009G255700 SIT4 phosphatase-associated protein domain containing protein, expressed K15501: PPP6R3, serine/threonine-protein phosphatase 6 regulatory subunit 3
20 Sobic.003G379200 wound-responsive family protein, putative, expressed -


Gene co-expression network
sample Sobic003G241700 Sobic003G241700 Sobic003G043000 Sobic003G043000 Sobic003G241700--Sobic003G043000 Sobic003G296900 Sobic003G296900 Sobic003G241700--Sobic003G296900 Sobic009G228000 Sobic009G228000 Sobic003G241700--Sobic009G228000 Sobic004G209700 Sobic004G209700 Sobic003G241700--Sobic004G209700 Sobic004G265500 Sobic004G265500 Sobic003G241700--Sobic004G265500 Sobic010G000800 Sobic010G000800 Sobic003G241700--Sobic010G000800 Sobic006G234700 Sobic006G234700 Sobic003G241700--Sobic006G234700 Sobic004G213800 Sobic004G213800 Sobic003G241700--Sobic004G213800 Sobic010G034100 Sobic010G034100 Sobic003G241700--Sobic010G034100 Sobic003G043000--Sobic004G265500 Sobic001G308400 Sobic001G308400 Sobic003G043000--Sobic001G308400 Sobic003G043000--Sobic003G296900 Sobic004G357100 Sobic004G357100 Sobic003G043000--Sobic004G357100 Sobic003G043000--Sobic003G241700 Sobic003G043000--Sobic009G228000 SobicK028600 SobicK028600 Sobic003G043000--SobicK028600 Sobic003G163200 Sobic003G163200 Sobic003G043000--Sobic003G163200 Sobic002G227500 Sobic002G227500 Sobic003G043000--Sobic002G227500 Sobic003G296900--Sobic003G043000 Sobic001G065100 Sobic001G065100 Sobic003G296900--Sobic001G065100 Sobic004G053500 Sobic004G053500 Sobic003G296900--Sobic004G053500 Sobic003G308500 Sobic003G308500 Sobic003G296900--Sobic003G308500 Sobic003G296900--Sobic004G265500 Sobic003G296900--Sobic003G241700 Sobic001G255800 Sobic001G255800 Sobic003G296900--Sobic001G255800 Sobic003G296900--Sobic010G000800 Sobic004G131300 Sobic004G131300 Sobic003G296900--Sobic004G131300 Sobic009G107300 Sobic009G107300 Sobic009G228000--Sobic009G107300 Sobic009G228000--Sobic003G043000 Sobic004G240400 Sobic004G240400 Sobic009G228000--Sobic004G240400 Sobic009G228000--Sobic003G241700 Sobic003G363700 Sobic003G363700 Sobic009G228000--Sobic003G363700 Sobic002G063900 Sobic002G063900 Sobic009G228000--Sobic002G063900 Sobic003G297500 Sobic003G297500 Sobic009G228000--Sobic003G297500 Sobic009G228000--Sobic004G209700 Sobic009G228000--Sobic006G234700 Sobic001G433800 Sobic001G433800 Sobic004G209700--Sobic001G433800 Sobic003G360400 Sobic003G360400 Sobic004G209700--Sobic003G360400 Sobic006G096900 Sobic006G096900 Sobic004G209700--Sobic006G096900 Sobic002G154000 Sobic002G154000 Sobic004G209700--Sobic002G154000 Sobic010G226000 Sobic010G226000 Sobic004G209700--Sobic010G226000 Sobic004G209700--Sobic003G241700 Sobic009G044800 Sobic009G044800 Sobic004G209700--Sobic009G044800 Sobic009G092400 Sobic009G092400 Sobic004G209700--Sobic009G092400 Sobic002G083500 Sobic002G083500 Sobic004G209700--Sobic002G083500 Sobic004G265500--Sobic003G043000 Sobic004G265500--Sobic003G163200 Sobic004G265500--Sobic001G308400 Sobic004G265500--Sobic004G357100 Sobic004G265500--Sobic010G000800 Sobic002G042600 Sobic002G042600 Sobic004G265500--Sobic002G042600 Sobic004G265500--Sobic004G053500 Sobic004G265500--SobicK028600 Sobic004G265500--Sobic002G227500 Sobic010G000800--Sobic004G265500 Sobic004G322400 Sobic004G322400 Sobic010G000800--Sobic004G322400 Sobic010G000800--Sobic003G163200 Sobic003G379200 Sobic003G379200 Sobic010G000800--Sobic003G379200 Sobic003G189600 Sobic003G189600 Sobic010G000800--Sobic003G189600 Sobic002G179400 Sobic002G179400 Sobic010G000800--Sobic002G179400 Sobic006G077200 Sobic006G077200 Sobic010G000800--Sobic006G077200 Sobic006G261400 Sobic006G261400 Sobic010G000800--Sobic006G261400 Sobic002G429300 Sobic002G429300 Sobic010G000800--Sobic002G429300 Sobic004G096400 Sobic004G096400 Sobic006G234700--Sobic004G096400 Sobic010G059500 Sobic010G059500 Sobic006G234700--Sobic010G059500 Sobic009G192300 Sobic009G192300 Sobic006G234700--Sobic009G192300 Sobic007G042400 Sobic007G042400 Sobic006G234700--Sobic007G042400 Sobic003G444800 Sobic003G444800 Sobic006G234700--Sobic003G444800 Sobic001G493200 Sobic001G493200 Sobic006G234700--Sobic001G493200 Sobic009G084900 Sobic009G084900 Sobic006G234700--Sobic009G084900 Sobic006G234700--Sobic001G433800 Sobic006G234700--Sobic002G083500 Sobic004G213800--Sobic003G241700 Sobic001G151100 Sobic001G151100 Sobic004G213800--Sobic001G151100 Sobic010G244900 Sobic010G244900 Sobic004G213800--Sobic010G244900 Sobic004G213800--Sobic009G228000 Sobic004G213800--Sobic003G296900 Sobic004G213800--Sobic003G043000 Sobic005G167700 Sobic005G167700 Sobic004G213800--Sobic005G167700 Sobic001G275300 Sobic001G275300 Sobic004G213800--Sobic001G275300 Sobic007G000300 Sobic007G000300 Sobic004G213800--Sobic007G000300 Sobic010G034100--Sobic010G059500 Sobic001G035200 Sobic001G035200 Sobic010G034100--Sobic001G035200 Sobic010G034100--Sobic009G192300 Sobic001G405600 Sobic001G405600 Sobic010G034100--Sobic001G405600 Sobic010G034100--Sobic009G084900 Sobic001G283600 Sobic001G283600 Sobic010G034100--Sobic001G283600 Sobic001G020000 Sobic001G020000 Sobic010G034100--Sobic001G020000 Sobic006G252900 Sobic006G252900 Sobic010G034100--Sobic006G252900 Sobic010G034100--Sobic002G227500
Octagon: transcription factors


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