Gene annotation
Transcriptome id Sobic.004G265500.1,Sobic.004G265500.4,Sobic.004G265500.2,Sobic.004G265500.3
Synonym
Functional annotation SET domain protein SDG117, putative, expressed
UniProt A0A1Z5RPR8 , A0A194YRP8
Pfam PF11722 PF05033 PF00856
Panther DB PTHR22884 PTHR22884:SF299
NCBI CDD KOG1082; Histone H3 (Lys9) methyltransferase SUV39H1/Clr4, required for transcriptional silencing
KEGG Orthology -
Gene Ontology GO:0008168; methyltransferase activity GO:0018024histone-lysine N-methyltransferase activity GO:0008270zinc ion binding GO:0005634nucleus GO:0005515protein binding


Orthologs (automatic annotation)
TAIR AT2G23740 : nucleic acid binding;sequence-specific DNA binding transcription factors;zinc ion binding
RAP-DB (Rice) LOC_Os02g47900.1 : SET domain protein SDG117, putative, expressed
MaizeGDB (Corn) Zm00025a032480 , Zm00025a021748
Brachypodium PNT69293 , KQK00964 , KQK00965
Barley HORVU6Hr1G069350.3 , HORVU6Hr1G069350.2 , HORVU6Hr1G069350.5 , HORVU6Hr1G069350.4 , HORVU6Hr1G069350.7 , HORVU6Hr1G069350.6 , HORVU6Hr1G069350.9 , HORVU6Hr1G069350.8
Wheat TraesCS6D02G254900 , TraesCS6B02G302100 , TraesCS6B02G302100 , TraesCS6A02G274600 , TraesCS6A02G274600 , TraesCS6D02G254900
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G043000 expressed protein -
2 Sobic.003G163200 expressed protein K11654: SMARCA5, SNF2H, SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5
3 Sobic.001G308400 expressed protein -
4 Sobic.004G357100 expressed protein -
5 Sobic.010G000800 PHD-finger domain containing protein, expressed -
6 Sobic.002G042600 ubiquitin carboxyl-terminal hydrolase, putative, expressed K11838: USP7, ubiquitin carboxyl-terminal hydrolase 7
7 Sobic.004G053500 HEAT repeat family protein, putative, expressed K17263: CAND1, cullin-associated NEDD8-dissociated protein 1
8 Sobic.K028600 expressed protein -
9 Sobic.002G227500 protein transport protein, putative, expressed K14006: protein transport protein SEC23
10 Sobic.003G296900 expressed protein -
11 Sobic.003G444800 expressed protein -
12 Sobic.001G065100 cullin, putative, expressed K10609: cullin 4
13 Sobic.004G096400 serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B, putative, expressed K04354: serine/threonine-protein phosphatase 2A regulatory subunit B
14 Sobic.003G363700 OsFBL5 - F-box domain and LRR containing protein, expressed -
15 Sobic.006G184900 tetratricopeptide repeat domain containing protein, expressed K15176: RNA polymerase-associated protein CTR9
16 Sobic.010G059500 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K12818: DHX8, ATP-dependent RNA helicase DHX8/PRP22
17 Sobic.003G241700 SET domain containing protein, expressed -
18 Sobic.002G179400 DNA binding protein, putative, expressed -
19 Sobic.008G098300 ubiquitin carboxyl-terminal hydrolase 26, putative, expressed K11858: ubiquitin carboxyl-terminal hydrolase 48
20 Sobic.008G088872 - -


Gene co-expression network
sample Sobic004G265500 Sobic004G265500 Sobic003G043000 Sobic003G043000 Sobic004G265500--Sobic003G043000 Sobic003G163200 Sobic003G163200 Sobic004G265500--Sobic003G163200 Sobic001G308400 Sobic001G308400 Sobic004G265500--Sobic001G308400 Sobic004G357100 Sobic004G357100 Sobic004G265500--Sobic004G357100 Sobic010G000800 Sobic010G000800 Sobic004G265500--Sobic010G000800 Sobic002G042600 Sobic002G042600 Sobic004G265500--Sobic002G042600 Sobic004G053500 Sobic004G053500 Sobic004G265500--Sobic004G053500 SobicK028600 SobicK028600 Sobic004G265500--SobicK028600 Sobic002G227500 Sobic002G227500 Sobic004G265500--Sobic002G227500 Sobic003G043000--Sobic004G265500 Sobic003G043000--Sobic001G308400 Sobic003G296900 Sobic003G296900 Sobic003G043000--Sobic003G296900 Sobic003G043000--Sobic004G357100 Sobic003G241700 Sobic003G241700 Sobic003G043000--Sobic003G241700 Sobic009G228000 Sobic009G228000 Sobic003G043000--Sobic009G228000 Sobic003G043000--SobicK028600 Sobic003G043000--Sobic003G163200 Sobic003G043000--Sobic002G227500 Sobic003G163200--Sobic004G265500 Sobic003G163200--Sobic002G042600 Sobic003G163200--Sobic010G000800 Sobic003G163200--Sobic003G043000 Sobic002G179400 Sobic002G179400 Sobic003G163200--Sobic002G179400 Sobic010G223100 Sobic010G223100 Sobic003G163200--Sobic010G223100 Sobic002G429300 Sobic002G429300 Sobic003G163200--Sobic002G429300 Sobic006G184900 Sobic006G184900 Sobic003G163200--Sobic006G184900 Sobic004G204100 Sobic004G204100 Sobic003G163200--Sobic004G204100 Sobic001G308400--Sobic004G265500 Sobic001G308400--Sobic002G227500 Sobic001G308400--SobicK028600 Sobic001G308400--Sobic003G043000 Sobic010G169900 Sobic010G169900 Sobic001G308400--Sobic010G169900 Sobic006G128100 Sobic006G128100 Sobic001G308400--Sobic006G128100 Sobic001G308400--Sobic004G357100 Sobic001G156900 Sobic001G156900 Sobic001G308400--Sobic001G156900 Sobic003G394200 Sobic003G394200 Sobic001G308400--Sobic003G394200 Sobic004G357100--SobicK028600 Sobic003G444800 Sobic003G444800 Sobic004G357100--Sobic003G444800 Sobic002G063900 Sobic002G063900 Sobic004G357100--Sobic002G063900 Sobic003G152400 Sobic003G152400 Sobic004G357100--Sobic003G152400 Sobic004G357100--Sobic003G043000 Sobic004G357100--Sobic004G265500 Sobic004G357100--Sobic001G308400 Sobic007G042400 Sobic007G042400 Sobic004G357100--Sobic007G042400 Sobic006G234700 Sobic006G234700 Sobic004G357100--Sobic006G234700 Sobic010G000800--Sobic004G265500 Sobic004G322400 Sobic004G322400 Sobic010G000800--Sobic004G322400 Sobic010G000800--Sobic003G163200 Sobic003G379200 Sobic003G379200 Sobic010G000800--Sobic003G379200 Sobic003G189600 Sobic003G189600 Sobic010G000800--Sobic003G189600 Sobic010G000800--Sobic002G179400 Sobic006G077200 Sobic006G077200 Sobic010G000800--Sobic006G077200 Sobic006G261400 Sobic006G261400 Sobic010G000800--Sobic006G261400 Sobic010G000800--Sobic002G429300 Sobic001G065100 Sobic001G065100 Sobic002G042600--Sobic001G065100 Sobic002G042600--Sobic006G184900 Sobic008G098900 Sobic008G098900 Sobic002G042600--Sobic008G098900 Sobic002G401500 Sobic002G401500 Sobic002G042600--Sobic002G401500 Sobic002G042600--Sobic002G179400 Sobic002G042600--Sobic004G322400 Sobic002G042600--Sobic002G429300 Sobic008G088872 Sobic008G088872 Sobic002G042600--Sobic008G088872 Sobic001G370900 Sobic001G370900 Sobic002G042600--Sobic001G370900 Sobic004G053500--Sobic002G401500 Sobic004G053500--Sobic002G179400 Sobic002G335600 Sobic002G335600 Sobic004G053500--Sobic002G335600 Sobic006G166200 Sobic006G166200 Sobic004G053500--Sobic006G166200 Sobic006G032300 Sobic006G032300 Sobic004G053500--Sobic006G032300 Sobic005G133800 Sobic005G133800 Sobic004G053500--Sobic005G133800 Sobic002G340900 Sobic002G340900 Sobic004G053500--Sobic002G340900 Sobic004G053500--Sobic003G296900 Sobic005G162500 Sobic005G162500 Sobic004G053500--Sobic005G162500 SobicK028600--Sobic003G444800 SobicK028600--Sobic004G357100 SobicK028600--Sobic001G308400 Sobic002G103600 Sobic002G103600 SobicK028600--Sobic002G103600 SobicK028600--Sobic007G042400 Sobic006G116100 Sobic006G116100 SobicK028600--Sobic006G116100 SobicK028600--Sobic003G043000 SobicK028600--Sobic006G234700 SobicK028600--Sobic002G063900 Sobic002G227500--Sobic001G308400 Sobic003G021600 Sobic003G021600 Sobic002G227500--Sobic003G021600 Sobic002G227500--Sobic001G156900 Sobic002G227500--Sobic010G169900 Sobic002G227500--Sobic004G265500 Sobic002G227500--Sobic003G043000 Sobic003G405500 Sobic003G405500 Sobic002G227500--Sobic003G405500 Sobic003G181700 Sobic003G181700 Sobic002G227500--Sobic003G181700 Sobic010G059500 Sobic010G059500 Sobic002G227500--Sobic010G059500
Octagon: transcription factors


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