Gene annotation
Transcriptome id Sobic.003G163200.1
Synonym CHR17, Sb03g014780
Functional annotation expressed protein
UniProt A0A1B6Q3J9
Pfam PF04851 PF09110 PF00271 PF09111
Panther DB PTHR10799 PTHR10799:SF691
NCBI CDD -
KEGG Orthology K11654; SMARCA5, SNF2H, SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5
Gene Ontology GO:0016787; hydrolase activity GO:0005524ATP binding GO:0003677DNA binding GO:0016818hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides GO:0006338chromatin remodeling GO:0005634nucleus GO:0003676nucleic acid binding


Orthologs (automatic annotation)
TAIR AT3G06400 : chromatin-remodeling protein 11
RAP-DB (Rice) LOC_Os01g27040.1 : chromatin-remodeling complex ATPase chain, putative, expressed
MaizeGDB (Corn) Zm00025a036325 , Zm00025a036328 , Zm00025a024538
Brachypodium PNT71811 , KQK18705 , KQK18704 , KQJ87242 , KQK04320 , KQK04319 , KQK07488
Barley HORVU3Hr1G012850.20 , HORVU3Hr1G012850.21 , HORVU3Hr1G012850.22 , HORVU3Hr1G012850.23 , HORVU3Hr1G012850.19 , HORVU3Hr1G012850.18 , HORVU3Hr1G012850.11 , HORVU3Hr1G012850.10 , HORVU3Hr1G012850.13 , HORVU3Hr1G012850.12 , HORVU3Hr1G012850.15 , HORVU3Hr1G012850.14 , HORVU3Hr1G012850.17 , HORVU3Hr1G012850.16 , HORVU3Hr1G012850.9 , HORVU3Hr1G012850.8 , HORVU3Hr1G012850.5 , HORVU3Hr1G012850.4 , HORVU3Hr1G012850.7 , HORVU3Hr1G012850.6 , HORVU3Hr1G012850.1 , HORVU3Hr1G012850.3 , HORVU3Hr1G012850.2
Wheat TraesCS1A02G091100 , TraesCS1D02G099600 , TraesCS1D02G099600 , TraesCS1D02G099600 , TraesCS3A02G069900 , TraesCS3D02G068900 , TraesCS3D02G068900 , TraesCS3D02G068900 , TraesCS3B02G083400 , TraesCS3B02G083400 , TraesCS3A02G069900 , TraesCS3A02G069900
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G265500 SET domain protein SDG117, putative, expressed -
2 Sobic.002G042600 ubiquitin carboxyl-terminal hydrolase, putative, expressed K11838: USP7, ubiquitin carboxyl-terminal hydrolase 7
3 Sobic.010G000800 PHD-finger domain containing protein, expressed -
4 Sobic.003G043000 expressed protein -
5 Sobic.002G179400 DNA binding protein, putative, expressed -
6 Sobic.010G223100 PAP/25A associated domain containing protein, putative, expressed -
7 Sobic.002G429300 importin subunit beta, putative, expressed -
8 Sobic.006G184900 tetratricopeptide repeat domain containing protein, expressed K15176: RNA polymerase-associated protein CTR9
9 Sobic.004G204100 expressed protein -
10 Sobic.004G096400 serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B, putative, expressed K04354: serine/threonine-protein phosphatase 2A regulatory subunit B
11 Sobic.002G154000 EDM2, putative, expressed -
12 Sobic.004G357100 expressed protein -
13 Sobic.009G251500 chromosome segregation protein sudA, putative, expressed K06669: SMC3, structural maintenance of chromosome 3 (chondroitin sulfate proteoglycan 6)
14 Sobic.010G001100 chromo domain containing protein, expressed -
15 Sobic.001G065100 cullin, putative, expressed K10609: cullin 4
16 Sobic.008G098300 ubiquitin carboxyl-terminal hydrolase 26, putative, expressed K11858: ubiquitin carboxyl-terminal hydrolase 48
17 Sobic.001G308400 expressed protein -
18 Sobic.003G241700 SET domain containing protein, expressed -
19 Sobic.003G229500 ZOS12-01 - C2H2 zinc finger protein, expressed -
20 Sobic.002G396500 FAT domain-containing protein, putative, expressed K08874: transformation/transcription domain-associated protein


Gene co-expression network
sample Sobic003G163200 Sobic003G163200 Sobic004G265500 Sobic004G265500 Sobic003G163200--Sobic004G265500 Sobic002G042600 Sobic002G042600 Sobic003G163200--Sobic002G042600 Sobic010G000800 Sobic010G000800 Sobic003G163200--Sobic010G000800 Sobic003G043000 Sobic003G043000 Sobic003G163200--Sobic003G043000 Sobic002G179400 Sobic002G179400 Sobic003G163200--Sobic002G179400 Sobic010G223100 Sobic010G223100 Sobic003G163200--Sobic010G223100 Sobic002G429300 Sobic002G429300 Sobic003G163200--Sobic002G429300 Sobic006G184900 Sobic006G184900 Sobic003G163200--Sobic006G184900 Sobic004G204100 Sobic004G204100 Sobic003G163200--Sobic004G204100 Sobic004G265500--Sobic003G043000 Sobic004G265500--Sobic003G163200 Sobic001G308400 Sobic001G308400 Sobic004G265500--Sobic001G308400 Sobic004G357100 Sobic004G357100 Sobic004G265500--Sobic004G357100 Sobic004G265500--Sobic010G000800 Sobic004G265500--Sobic002G042600 Sobic004G053500 Sobic004G053500 Sobic004G265500--Sobic004G053500 SobicK028600 SobicK028600 Sobic004G265500--SobicK028600 Sobic002G227500 Sobic002G227500 Sobic004G265500--Sobic002G227500 Sobic001G065100 Sobic001G065100 Sobic002G042600--Sobic001G065100 Sobic002G042600--Sobic006G184900 Sobic008G098900 Sobic008G098900 Sobic002G042600--Sobic008G098900 Sobic002G401500 Sobic002G401500 Sobic002G042600--Sobic002G401500 Sobic002G042600--Sobic002G179400 Sobic004G322400 Sobic004G322400 Sobic002G042600--Sobic004G322400 Sobic002G042600--Sobic002G429300 Sobic008G088872 Sobic008G088872 Sobic002G042600--Sobic008G088872 Sobic001G370900 Sobic001G370900 Sobic002G042600--Sobic001G370900 Sobic010G000800--Sobic004G265500 Sobic010G000800--Sobic004G322400 Sobic010G000800--Sobic003G163200 Sobic003G379200 Sobic003G379200 Sobic010G000800--Sobic003G379200 Sobic003G189600 Sobic003G189600 Sobic010G000800--Sobic003G189600 Sobic010G000800--Sobic002G179400 Sobic006G077200 Sobic006G077200 Sobic010G000800--Sobic006G077200 Sobic006G261400 Sobic006G261400 Sobic010G000800--Sobic006G261400 Sobic010G000800--Sobic002G429300 Sobic003G043000--Sobic004G265500 Sobic003G043000--Sobic001G308400 Sobic003G296900 Sobic003G296900 Sobic003G043000--Sobic003G296900 Sobic003G043000--Sobic004G357100 Sobic003G241700 Sobic003G241700 Sobic003G043000--Sobic003G241700 Sobic009G228000 Sobic009G228000 Sobic003G043000--Sobic009G228000 Sobic003G043000--SobicK028600 Sobic003G043000--Sobic003G163200 Sobic003G043000--Sobic002G227500 Sobic001G493700 Sobic001G493700 Sobic002G179400--Sobic001G493700 Sobic002G179400--Sobic002G042600 Sobic002G179400--Sobic004G053500 Sobic002G179400--Sobic002G429300 Sobic002G179400--Sobic006G184900 Sobic003G233400 Sobic003G233400 Sobic002G179400--Sobic003G233400 Sobic002G133300 Sobic002G133300 Sobic002G179400--Sobic002G133300 Sobic002G179400--Sobic001G065100 Sobic002G179400--Sobic004G322400 Sobic010G223100--Sobic004G204100 Sobic010G223100--Sobic004G322400 Sobic010G275500 Sobic010G275500 Sobic010G223100--Sobic010G275500 Sobic009G084900 Sobic009G084900 Sobic010G223100--Sobic009G084900 Sobic004G023100 Sobic004G023100 Sobic010G223100--Sobic004G023100 Sobic001G287500 Sobic001G287500 Sobic010G223100--Sobic001G287500 Sobic003G072200 Sobic003G072200 Sobic010G223100--Sobic003G072200 Sobic010G223100--Sobic003G189600 Sobic010G185400 Sobic010G185400 Sobic010G223100--Sobic010G185400 Sobic009G131300 Sobic009G131300 Sobic002G429300--Sobic009G131300 Sobic005G162500 Sobic005G162500 Sobic002G429300--Sobic005G162500 Sobic002G429300--Sobic006G184900 Sobic001G263600 Sobic001G263600 Sobic002G429300--Sobic001G263600 Sobic002G429300--Sobic002G042600 Sobic002G429300--Sobic008G098900 Sobic002G429300--Sobic001G493700 Sobic002G335600 Sobic002G335600 Sobic002G429300--Sobic002G335600 Sobic002G429300--Sobic008G088872 Sobic006G184900--Sobic002G335600 Sobic006G184900--Sobic002G429300 Sobic006G184900--Sobic008G088872 Sobic006G184900--Sobic002G042600 Sobic006G184900--Sobic001G370900 Sobic006G184900--Sobic009G131300 Sobic006G184900--Sobic001G493700 Sobic006G184900--Sobic002G179400 Sobic005G062200 Sobic005G062200 Sobic006G184900--Sobic005G062200 Sobic004G204100--Sobic010G223100 Sobic010G139500 Sobic010G139500 Sobic004G204100--Sobic010G139500 Sobic004G204100--Sobic001G287500 Sobic004G204100--Sobic003G233400 Sobic004G204100--Sobic004G023100 Sobic003G314700 Sobic003G314700 Sobic004G204100--Sobic003G314700 Sobic004G204100--Sobic002G179400 Sobic004G040500 Sobic004G040500 Sobic004G204100--Sobic004G040500 Sobic004G204100--Sobic003G163200
Octagon: transcription factors


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