Gene annotation
Transcriptome id Sobic.008G033900.1,Sobic.008G033900.2,Sobic.008G033900.3
Synonym Sb08g002920
Functional annotation PHD-finger family protein, expressed
UniProt A0A1Z5R4K2 , A0A1Z5R5I7 , A0A1Z5R4K1
Pfam PF15612 PF00628 PF02791
Panther DB PTHR22880 PTHR22880:SF152
NCBI CDD KOG1473; Nucleosome remodeling factor, subunit NURF301/BPTF
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT5G35210 : metalloendopeptidases;zinc ion binding;DNA binding
RAP-DB (Rice) LOC_Os11g05130.1 : PHD-finger family protein, expressed
MaizeGDB (Corn) Zm00025a053865 , Zm00025a013028
Brachypodium KQJ89596 , PNT65458 , PNT65459 , KQJ89595
Barley HORVU4Hr1G025620.7 , HORVU4Hr1G025620.4 , HORVU4Hr1G025620.2 , HORVU4Hr1G025620.1 , HORVU4Hr1G025620.9 , HORVU4Hr1G025620.8 , HORVU5Hr1G041230.13 , HORVU5Hr1G041230.12 , HORVU5Hr1G041230.11 , HORVU5Hr1G041230.10 , HORVU5Hr1G041230.14 , HORVU4Hr1G025620.26 , HORVU4Hr1G025620.24 , HORVU4Hr1G025620.25 , HORVU4Hr1G025620.22 , HORVU4Hr1G025620.23 , HORVU4Hr1G025620.20 , HORVU4Hr1G025620.21 , HORVU4Hr1G025620.28 , HORVU4Hr1G025620.29 , HORVU5Hr1G041230.3 , HORVU5Hr1G041230.2 , HORVU5Hr1G041230.1 , HORVU5Hr1G041230.7 , HORVU5Hr1G041230.6 , HORVU5Hr1G041230.5 , HORVU5Hr1G041230.4 , HORVU5Hr1G041230.9 , HORVU5Hr1G041230.8 , HORVU4Hr1G025620.19 , HORVU4Hr1G025620.18 , HORVU4Hr1G025620.17 , HORVU4Hr1G025620.16 , HORVU4Hr1G025620.15 , HORVU4Hr1G025620.14 , HORVU4Hr1G025620.13 , HORVU4Hr1G025620.10
Wheat TraesCS4A02G184500 , TraesCS5D02G138300 , TraesCS5D02G138300 , TraesCS4B02G134200 , TraesCS5A02G130800 , TraesCS5A02G130800 , TraesCS4D02G129100 , TraesCS5B02G130700 , TraesCS5B02G130700 , TraesCS5B02G130700
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G196300 DNA binding protein, putative, expressed -
2 Sobic.002G133300 ZOS9-20 - C2H2 zinc finger protein, expressed K14400: pre-mRNA cleavage complex 2 protein Pcf11
3 Sobic.003G379200 wound-responsive family protein, putative, expressed -
4 Sobic.009G256300 DNA binding protein, putative, expressed -
5 Sobic.001G457900 expressed protein -
6 Sobic.001G493700 ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed -
7 Sobic.002G308700 expressed protein K11643: CHD4, chromodomain-helicase-DNA-binding protein 4
8 Sobic.002G179400 DNA binding protein, putative, expressed -
9 Sobic.004G276400 expressed protein K11320: E1A-binding protein p400
10 Sobic.004G040500 expressed protein -
11 Sobic.010G079500 PHD-finger domain containing protein, putative, expressed -
12 Sobic.009G255700 SIT4 phosphatase-associated protein domain containing protein, expressed K15501: PPP6R3, serine/threonine-protein phosphatase 6 regulatory subunit 3
13 Sobic.006G184900 tetratricopeptide repeat domain containing protein, expressed K15176: RNA polymerase-associated protein CTR9
14 Sobic.001G230000 expressed protein K10779: transcriptional regulator ATRX
15 Sobic.001G004400 - K14290: XPO1, exportin-1
16 Sobic.007G063000 expressed protein -
17 Sobic.002G316600 expressed protein -
18 Sobic.003G241700 SET domain containing protein, expressed -
19 Sobic.006G088200 nonsense-mediated decay UPF3, putative, expressed K14328: UPF3, regulator of nonsense transcripts 3
20 Sobic.002G335600 eukaryotic translation initiation factor 4G, putative, expressed K03260: translation initiation factor 4G


Gene co-expression network
sample Sobic008G033900 Sobic008G033900 Sobic003G196300 Sobic003G196300 Sobic008G033900--Sobic003G196300 Sobic002G133300 Sobic002G133300 Sobic008G033900--Sobic002G133300 Sobic003G379200 Sobic003G379200 Sobic008G033900--Sobic003G379200 Sobic009G256300 Sobic009G256300 Sobic008G033900--Sobic009G256300 Sobic001G457900 Sobic001G457900 Sobic008G033900--Sobic001G457900 Sobic001G493700 Sobic001G493700 Sobic008G033900--Sobic001G493700 Sobic002G308700 Sobic002G308700 Sobic008G033900--Sobic002G308700 Sobic002G179400 Sobic002G179400 Sobic008G033900--Sobic002G179400 Sobic004G276400 Sobic004G276400 Sobic008G033900--Sobic004G276400 Sobic010G206900 Sobic010G206900 Sobic003G196300--Sobic010G206900 Sobic004G034900 Sobic004G034900 Sobic003G196300--Sobic004G034900 Sobic001G194200 Sobic001G194200 Sobic003G196300--Sobic001G194200 Sobic007G063000 Sobic007G063000 Sobic003G196300--Sobic007G063000 Sobic001G289800 Sobic001G289800 Sobic003G196300--Sobic001G289800 Sobic003G196300--Sobic004G276400 Sobic010G247800 Sobic010G247800 Sobic003G196300--Sobic010G247800 Sobic003G196300--Sobic009G256300 Sobic001G534700 Sobic001G534700 Sobic003G196300--Sobic001G534700 Sobic002G133300--Sobic004G276400 Sobic001G433800 Sobic001G433800 Sobic002G133300--Sobic001G433800 Sobic001G004400 Sobic001G004400 Sobic002G133300--Sobic001G004400 Sobic002G133300--Sobic001G289800 Sobic003G072200 Sobic003G072200 Sobic002G133300--Sobic003G072200 Sobic002G397500 Sobic002G397500 Sobic002G133300--Sobic002G397500 Sobic004G131300 Sobic004G131300 Sobic002G133300--Sobic004G131300 Sobic002G133300--Sobic001G194200 Sobic002G133300--Sobic001G493700 Sobic006G261400 Sobic006G261400 Sobic003G379200--Sobic006G261400 Sobic009G044800 Sobic009G044800 Sobic003G379200--Sobic009G044800 Sobic006G088200 Sobic006G088200 Sobic003G379200--Sobic006G088200 Sobic003G360400 Sobic003G360400 Sobic003G379200--Sobic003G360400 Sobic008G083200 Sobic008G083200 Sobic003G379200--Sobic008G083200 Sobic010G000800 Sobic010G000800 Sobic003G379200--Sobic010G000800 Sobic001G354600 Sobic001G354600 Sobic003G379200--Sobic001G354600 Sobic003G363700 Sobic003G363700 Sobic003G379200--Sobic003G363700 Sobic006G174850 Sobic006G174850 Sobic003G379200--Sobic006G174850 Sobic010G112100 Sobic010G112100 Sobic009G256300--Sobic010G112100 Sobic003G389200 Sobic003G389200 Sobic009G256300--Sobic003G389200 Sobic004G242400 Sobic004G242400 Sobic009G256300--Sobic004G242400 Sobic010G010700 Sobic010G010700 Sobic009G256300--Sobic010G010700 Sobic010G123600 Sobic010G123600 Sobic009G256300--Sobic010G123600 Sobic009G256300--Sobic003G360400 Sobic009G109200 Sobic009G109200 Sobic009G256300--Sobic009G109200 Sobic009G256300--Sobic004G276400 Sobic001G542400 Sobic001G542400 Sobic009G256300--Sobic001G542400 Sobic001G457900--Sobic002G133300 Sobic001G457900--Sobic003G196300 Sobic001G117200 Sobic001G117200 Sobic001G457900--Sobic001G117200 Sobic008G092600 Sobic008G092600 Sobic001G457900--Sobic008G092600 Sobic001G273700 Sobic001G273700 Sobic001G457900--Sobic001G273700 Sobic001G457900--Sobic003G072200 Sobic003G428100 Sobic003G428100 Sobic001G457900--Sobic003G428100 Sobic001G196500 Sobic001G196500 Sobic001G457900--Sobic001G196500 Sobic003G229500 Sobic003G229500 Sobic001G457900--Sobic003G229500 Sobic001G493700--Sobic002G179400 Sobic005G162500 Sobic005G162500 Sobic001G493700--Sobic005G162500 Sobic006G184900 Sobic006G184900 Sobic001G493700--Sobic006G184900 Sobic001G493700--Sobic002G133300 Sobic009G131300 Sobic009G131300 Sobic001G493700--Sobic009G131300 Sobic002G429300 Sobic002G429300 Sobic001G493700--Sobic002G429300 Sobic002G042600 Sobic002G042600 Sobic001G493700--Sobic002G042600 Sobic002G335600 Sobic002G335600 Sobic001G493700--Sobic002G335600 Sobic001G493700--Sobic006G088200 Sobic003G186000 Sobic003G186000 Sobic002G308700--Sobic003G186000 Sobic002G308700--Sobic004G276400 Sobic002G308700--Sobic005G162500 Sobic010G105200 Sobic010G105200 Sobic002G308700--Sobic010G105200 Sobic004G334300 Sobic004G334300 Sobic002G308700--Sobic004G334300 Sobic002G308700--Sobic002G133300 Sobic001G457800 Sobic001G457800 Sobic002G308700--Sobic001G457800 Sobic001G151100 Sobic001G151100 Sobic002G308700--Sobic001G151100 Sobic002G316600 Sobic002G316600 Sobic002G308700--Sobic002G316600 Sobic002G179400--Sobic001G493700 Sobic002G179400--Sobic002G042600 Sobic004G053500 Sobic004G053500 Sobic002G179400--Sobic004G053500 Sobic002G179400--Sobic002G429300 Sobic002G179400--Sobic006G184900 Sobic003G233400 Sobic003G233400 Sobic002G179400--Sobic003G233400 Sobic002G179400--Sobic002G133300 Sobic001G065100 Sobic001G065100 Sobic002G179400--Sobic001G065100 Sobic004G322400 Sobic004G322400 Sobic002G179400--Sobic004G322400 Sobic004G276400--Sobic003G186000 Sobic004G276400--Sobic010G010700 Sobic004G276400--Sobic010G105200 Sobic004G276400--Sobic001G194200 Sobic004G276400--Sobic004G034900 Sobic007G062800 Sobic007G062800 Sobic004G276400--Sobic007G062800 Sobic004G291900 Sobic004G291900 Sobic004G276400--Sobic004G291900 Sobic004G276400--Sobic004G242400 Sobic008G001200 Sobic008G001200 Sobic004G276400--Sobic008G001200
Octagon: transcription factors


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