Gene annotation
Transcriptome id Sobic.006G056700.1
Synonym Sb06g014480
Functional annotation tRNA nucleotidyltransferase/polyA polymerase family protein, putative, expressed
UniProt A0A1B6PKF1
Pfam PF12627 PF01743
Panther DB PTHR13734 PTHR13734:SF47
NCBI CDD KOG2159; tRNA nucleotidyltransferase/poly(A) polymerase
KEGG Orthology -
Gene Ontology GO:0016779; nucleotidyltransferase activity GO:0006396RNA processing GO:0003723RNA binding


Orthologs (automatic annotation)
TAIR AT5G23690 : Polynucleotide adenylyltransferase family protein
RAP-DB (Rice) LOC_Os04g32490.2 : tRNA nucleotidyltransferase/polyA polymerase family protein, putative, expressed
MaizeGDB (Corn) Zm00025a011684
Brachypodium KQJ82376
Barley HORVU2Hr1G070890.9 , HORVU2Hr1G070890.5 , HORVU2Hr1G070890.6 , HORVU2Hr1G070890.7 , HORVU2Hr1G070890.1 , HORVU2Hr1G070890.2 , HORVU2Hr1G070890.3 , HORVU2Hr1G070890.4 , HORVU2Hr1G070890.18 , HORVU2Hr1G070890.16 , HORVU2Hr1G070890.17 , HORVU2Hr1G070890.14 , HORVU2Hr1G070890.15 , HORVU2Hr1G070890.12 , HORVU2Hr1G070890.10 , HORVU2Hr1G070890.11
Wheat TraesCS2B02G303800 , TraesCS2A02G286800 , TraesCS2A02G286800 , TraesCS2D02G285400
Populus -


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cDNA sequences
Sobic.006G056700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G096900 expressed protein -
2 Sobic.001G456300 digalactosyldiacylglycerol synthase, chloroplast precursor, putative, expressed K09480: digalactosyldiacylglycerol synthase
3 Sobic.010G237900 RNA recognition motif containing protein, putative, expressed -
4 Sobic.001G275300 - K10899: ATP-dependent DNA helicase Q1
5 Sobic.008G063300 exonuclease, putative, expressed K14570: REX1, REXO1, RNA exonuclease 1
6 Sobic.002G170200 zinc finger family protein, putative, expressed -
7 Sobic.004G131800 sirohydrochlorin ferrochelatase, putative, expressed -
8 Sobic.007G159900 ubiquitin carboxyl-terminal hydrolase family protein, expressed K11855: ubiquitin carboxyl-terminal hydrolase 36/42
9 Sobic.003G360400 ulp1 protease family protein, putative, expressed K08596: sentrin-specific protease 7
10 Sobic.006G088200 nonsense-mediated decay UPF3, putative, expressed K14328: UPF3, regulator of nonsense transcripts 3
11 Sobic.004G209700 FAR1 family protein, expressed -
12 Sobic.003G095900 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K14442: DHX36, ATP-dependent RNA helicase DHX36
13 Sobic.002G154000 EDM2, putative, expressed -
14 Sobic.002G165800 - -
15 Sobic.005G100700 mRNA-capping enzyme, putative, expressed -
16 Sobic.010G226000 expressed protein -
17 Sobic.009G228000 ubiquitin-conjugating enzyme domain containing protein, expressed K10581: ubiquitin-conjugating enzyme E2 O
18 Sobic.003G416700 homeobox domain containing protein, expressed -
19 Sobic.001G178300 DNA-binding protein, putative, expressed -
20 Sobic.006G250300 pelota, putative, expressed K06965: PELO, DOM34, protein pelota


Gene co-expression network
sample Sobic006G056700 Sobic006G056700 Sobic006G096900 Sobic006G096900 Sobic006G056700--Sobic006G096900 Sobic001G456300 Sobic001G456300 Sobic006G056700--Sobic001G456300 Sobic010G237900 Sobic010G237900 Sobic006G056700--Sobic010G237900 Sobic001G275300 Sobic001G275300 Sobic006G056700--Sobic001G275300 Sobic008G063300 Sobic008G063300 Sobic006G056700--Sobic008G063300 Sobic002G170200 Sobic002G170200 Sobic006G056700--Sobic002G170200 Sobic004G131800 Sobic004G131800 Sobic006G056700--Sobic004G131800 Sobic007G159900 Sobic007G159900 Sobic006G056700--Sobic007G159900 Sobic003G360400 Sobic003G360400 Sobic006G056700--Sobic003G360400 Sobic006G096900--Sobic008G063300 Sobic009G177500 Sobic009G177500 Sobic006G096900--Sobic009G177500 Sobic006G252900 Sobic006G252900 Sobic006G096900--Sobic006G252900 Sobic006G096900--Sobic003G360400 Sobic003G095900 Sobic003G095900 Sobic006G096900--Sobic003G095900 Sobic006G096900--Sobic006G056700 Sobic001G433800 Sobic001G433800 Sobic006G096900--Sobic001G433800 Sobic001G384300 Sobic001G384300 Sobic006G096900--Sobic001G384300 Sobic009G044800 Sobic009G044800 Sobic006G096900--Sobic009G044800 Sobic005G100700 Sobic005G100700 Sobic001G456300--Sobic005G100700 Sobic001G456300--Sobic003G360400 Sobic001G456300--Sobic006G056700 Sobic007G183900 Sobic007G183900 Sobic001G456300--Sobic007G183900 Sobic006G118700 Sobic006G118700 Sobic001G456300--Sobic006G118700 Sobic010G112100 Sobic010G112100 Sobic001G456300--Sobic010G112100 Sobic001G063700 Sobic001G063700 Sobic001G456300--Sobic001G063700 Sobic001G461400 Sobic001G461400 Sobic001G456300--Sobic001G461400 Sobic001G025000 Sobic001G025000 Sobic001G456300--Sobic001G025000 Sobic004G129300 Sobic004G129300 Sobic010G237900--Sobic004G129300 Sobic007G191700 Sobic007G191700 Sobic010G237900--Sobic007G191700 Sobic001G002600 Sobic001G002600 Sobic010G237900--Sobic001G002600 Sobic007G084100 Sobic007G084100 Sobic010G237900--Sobic007G084100 Sobic002G425500 Sobic002G425500 Sobic010G237900--Sobic002G425500 Sobic006G014100 Sobic006G014100 Sobic010G237900--Sobic006G014100 Sobic003G121300 Sobic003G121300 Sobic010G237900--Sobic003G121300 Sobic004G156800 Sobic004G156800 Sobic010G237900--Sobic004G156800 Sobic010G145800 Sobic010G145800 Sobic010G237900--Sobic010G145800 Sobic006G088200 Sobic006G088200 Sobic001G275300--Sobic006G088200 Sobic003G214600 Sobic003G214600 Sobic001G275300--Sobic003G214600 Sobic007G000300 Sobic007G000300 Sobic001G275300--Sobic007G000300 Sobic001G275300--Sobic003G095900 Sobic001G275300--Sobic006G056700 Sobic004G158400 Sobic004G158400 Sobic001G275300--Sobic004G158400 Sobic001G058200 Sobic001G058200 Sobic001G275300--Sobic001G058200 Sobic001G275300--Sobic007G159900 Sobic005G167700 Sobic005G167700 Sobic001G275300--Sobic005G167700 Sobic004G140600 Sobic004G140600 Sobic008G063300--Sobic004G140600 Sobic008G063300--Sobic001G433800 Sobic008G063300--Sobic006G096900 Sobic008G063300--Sobic003G360400 Sobic008G063300--Sobic003G095900 Sobic010G123600 Sobic010G123600 Sobic008G063300--Sobic010G123600 Sobic003G188400 Sobic003G188400 Sobic008G063300--Sobic003G188400 Sobic008G063300--Sobic009G177500 Sobic010G059500 Sobic010G059500 Sobic008G063300--Sobic010G059500 Sobic002G170200--Sobic004G131800 Sobic001G283600 Sobic001G283600 Sobic002G170200--Sobic001G283600 Sobic003G176000 Sobic003G176000 Sobic002G170200--Sobic003G176000 Sobic005G198000 Sobic005G198000 Sobic002G170200--Sobic005G198000 Sobic002G170200--Sobic006G056700 Sobic006G127600 Sobic006G127600 Sobic002G170200--Sobic006G127600 Sobic006G039400 Sobic006G039400 Sobic002G170200--Sobic006G039400 Sobic007G162100 Sobic007G162100 Sobic002G170200--Sobic007G162100 Sobic006G261400 Sobic006G261400 Sobic002G170200--Sobic006G261400 Sobic004G131800--Sobic003G176000 Sobic002G211800 Sobic002G211800 Sobic004G131800--Sobic002G211800 Sobic004G131800--Sobic002G170200 Sobic004G131800--Sobic006G127600 Sobic010G032900 Sobic010G032900 Sobic004G131800--Sobic010G032900 Sobic002G344000 Sobic002G344000 Sobic004G131800--Sobic002G344000 Sobic004G131800--Sobic006G056700 Sobic001G178300 Sobic001G178300 Sobic004G131800--Sobic001G178300 Sobic002G294800 Sobic002G294800 Sobic004G131800--Sobic002G294800 Sobic007G159900--Sobic003G360400 Sobic007G159900--Sobic004G158400 Sobic002G366400 Sobic002G366400 Sobic007G159900--Sobic002G366400 Sobic007G159900--Sobic010G112100 Sobic007G159900--Sobic007G183900 Sobic005G064000 Sobic005G064000 Sobic007G159900--Sobic005G064000 Sobic007G159900--Sobic005G100700 Sobic007G159900--Sobic003G188400 Sobic008G113100 Sobic008G113100 Sobic007G159900--Sobic008G113100 Sobic003G360400--Sobic010G112100 Sobic002G154000 Sobic002G154000 Sobic003G360400--Sobic002G154000 Sobic001G354600 Sobic001G354600 Sobic003G360400--Sobic001G354600 Sobic003G360400--Sobic001G433800 Sobic003G389200 Sobic003G389200 Sobic003G360400--Sobic003G389200 Sobic003G360400--Sobic009G044800 Sobic005G112300 Sobic005G112300 Sobic003G360400--Sobic005G112300 Sobic007G063000 Sobic007G063000 Sobic003G360400--Sobic007G063000 Sobic009G256300 Sobic009G256300 Sobic003G360400--Sobic009G256300
Octagon: transcription factors


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