Gene annotation
Transcriptome id Sobic.001G456300.1
Synonym DGD2, Sb01g042870
Functional annotation digalactosyldiacylglycerol synthase, chloroplast precursor, putative, expressed
UniProt C5WSS6
Pfam PF13692
Panther DB PTHR12526 PTHR12526:SF344
NCBI CDD -
KEGG Orthology K09480; digalactosyldiacylglycerol synthase
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G00550 : digalactosyl diacylglycerol deficient 2
RAP-DB (Rice) LOC_Os03g11560.1 : digalactosyldiacylglycerol synthase, chloroplast precursor, putative, expressed
MaizeGDB (Corn) Zm00025a001293
Brachypodium PNT77880 , PNT77881 , PNT77882 , PNT77883 , KQK22898 , KQK22896 , KQK22897
Barley HORVU4Hr1G067920.4 , HORVU4Hr1G067920.2 , HORVU4Hr1G067920.3 , HORVU4Hr1G067920.1
Wheat TraesCS4A02G058200 , TraesCS4B02G246700 , TraesCS4D02G246000
Populus -


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cDNA sequences
Sobic.001G456300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G100700 mRNA-capping enzyme, putative, expressed -
2 Sobic.003G360400 ulp1 protease family protein, putative, expressed K08596: sentrin-specific protease 7
3 Sobic.006G056700 tRNA nucleotidyltransferase/polyA polymerase family protein, putative, expressed -
4 Sobic.007G183900 ubiquitin family protein, putative, expressed -
5 Sobic.006G118700 MYB family transcription factor, putative, expressed -
6 Sobic.010G112100 transcription factor jumonji, putative, expressed K11446: KDM5, [histone H3]-trimethyl-L-lysine4 demethylase
7 Sobic.001G063700 expressed protein -
8 Sobic.001G461400 pre-mRNA-processing factor 39, putative, expressed K13217: PRPF39, pre-mRNA-processing factor 39
9 Sobic.001G025000 FACT complex subunit SPT16, putative, expressed -
10 Sobic.009G044800 cullin, putative, expressed K03347: CUL1, cullin 1
11 Sobic.002G154000 EDM2, putative, expressed -
12 Sobic.006G096900 expressed protein -
13 Sobic.003G379200 wound-responsive family protein, putative, expressed -
14 Sobic.007G159900 ubiquitin carboxyl-terminal hydrolase family protein, expressed K11855: ubiquitin carboxyl-terminal hydrolase 36/42
15 Sobic.003G416700 homeobox domain containing protein, expressed -
16 Sobic.003G316500 expressed protein -
17 Sobic.005G200800 homeobox domain containing protein, expressed -
18 Sobic.002G362800 formin-like protein 20, putative, expressed K02184: formin 2
19 Sobic.001G400500 calpain, putative, expressed -
20 Sobic.006G250300 pelota, putative, expressed K06965: PELO, DOM34, protein pelota


Gene co-expression network
sample Sobic001G456300 Sobic001G456300 Sobic005G100700 Sobic005G100700 Sobic001G456300--Sobic005G100700 Sobic003G360400 Sobic003G360400 Sobic001G456300--Sobic003G360400 Sobic006G056700 Sobic006G056700 Sobic001G456300--Sobic006G056700 Sobic007G183900 Sobic007G183900 Sobic001G456300--Sobic007G183900 Sobic006G118700 Sobic006G118700 Sobic001G456300--Sobic006G118700 Sobic010G112100 Sobic010G112100 Sobic001G456300--Sobic010G112100 Sobic001G063700 Sobic001G063700 Sobic001G456300--Sobic001G063700 Sobic001G461400 Sobic001G461400 Sobic001G456300--Sobic001G461400 Sobic001G025000 Sobic001G025000 Sobic001G456300--Sobic001G025000 Sobic005G100700--Sobic003G360400 Sobic002G344000 Sobic002G344000 Sobic005G100700--Sobic002G344000 Sobic007G159900 Sobic007G159900 Sobic005G100700--Sobic007G159900 Sobic003G389200 Sobic003G389200 Sobic005G100700--Sobic003G389200 Sobic008G113100 Sobic008G113100 Sobic005G100700--Sobic008G113100 Sobic007G146100 Sobic007G146100 Sobic005G100700--Sobic007G146100 Sobic006G096900 Sobic006G096900 Sobic005G100700--Sobic006G096900 Sobic005G100700--Sobic001G456300 Sobic005G100700--Sobic010G112100 Sobic003G360400--Sobic010G112100 Sobic002G154000 Sobic002G154000 Sobic003G360400--Sobic002G154000 Sobic001G354600 Sobic001G354600 Sobic003G360400--Sobic001G354600 Sobic001G433800 Sobic001G433800 Sobic003G360400--Sobic001G433800 Sobic003G360400--Sobic003G389200 Sobic009G044800 Sobic009G044800 Sobic003G360400--Sobic009G044800 Sobic005G112300 Sobic005G112300 Sobic003G360400--Sobic005G112300 Sobic007G063000 Sobic007G063000 Sobic003G360400--Sobic007G063000 Sobic009G256300 Sobic009G256300 Sobic003G360400--Sobic009G256300 Sobic006G056700--Sobic006G096900 Sobic006G056700--Sobic001G456300 Sobic010G237900 Sobic010G237900 Sobic006G056700--Sobic010G237900 Sobic001G275300 Sobic001G275300 Sobic006G056700--Sobic001G275300 Sobic008G063300 Sobic008G063300 Sobic006G056700--Sobic008G063300 Sobic002G170200 Sobic002G170200 Sobic006G056700--Sobic002G170200 Sobic004G131800 Sobic004G131800 Sobic006G056700--Sobic004G131800 Sobic006G056700--Sobic007G159900 Sobic006G056700--Sobic003G360400 Sobic003G416700 Sobic003G416700 Sobic007G183900--Sobic003G416700 Sobic007G183900--Sobic006G118700 Sobic007G183900--Sobic003G360400 Sobic010G236400 Sobic010G236400 Sobic007G183900--Sobic010G236400 Sobic007G183900--Sobic009G044800 Sobic010G069100 Sobic010G069100 Sobic007G183900--Sobic010G069100 Sobic010G275500 Sobic010G275500 Sobic007G183900--Sobic010G275500 Sobic007G183900--Sobic001G354600 Sobic002G264200 Sobic002G264200 Sobic007G183900--Sobic002G264200 Sobic006G118700--Sobic007G183900 Sobic006G118700--Sobic002G264200 Sobic006G118700--Sobic010G112100 Sobic006G118700--Sobic003G360400 Sobic004G355800 Sobic004G355800 Sobic006G118700--Sobic004G355800 Sobic006G118700--Sobic010G069100 Sobic002G366400 Sobic002G366400 Sobic006G118700--Sobic002G366400 Sobic006G118700--Sobic010G236400 Sobic007G091600 Sobic007G091600 Sobic006G118700--Sobic007G091600 Sobic010G112100--Sobic003G360400 Sobic010G112100--Sobic005G112300 Sobic010G112100--Sobic009G256300 Sobic003G408600 Sobic003G408600 Sobic010G112100--Sobic003G408600 Sobic010G112100--Sobic001G433800 Sobic001G540400 Sobic001G540400 Sobic010G112100--Sobic001G540400 Sobic007G062800 Sobic007G062800 Sobic010G112100--Sobic007G062800 Sobic004G242400 Sobic004G242400 Sobic010G112100--Sobic004G242400 Sobic010G112100--Sobic003G389200 Sobic001G063700--Sobic001G461400 Sobic001G063700--Sobic003G360400 Sobic001G063700--Sobic010G112100 Sobic001G063700--Sobic002G154000 Sobic003G188400 Sobic003G188400 Sobic001G063700--Sobic003G188400 Sobic001G063700--Sobic001G433800 Sobic001G063700--Sobic009G256300 Sobic008G002500 Sobic008G002500 Sobic001G063700--Sobic008G002500 Sobic001G063700--Sobic001G354600 Sobic001G461400--Sobic001G063700 Sobic001G461400--Sobic003G416700 Sobic001G461400--Sobic002G264200 Sobic001G461400--Sobic002G154000 Sobic001G087600 Sobic001G087600 Sobic001G461400--Sobic001G087600 Sobic005G200800 Sobic005G200800 Sobic001G461400--Sobic005G200800 Sobic001G461400--Sobic003G360400 Sobic002G071500 Sobic002G071500 Sobic001G461400--Sobic002G071500 Sobic001G461400--Sobic010G112100 Sobic001G025000--Sobic003G360400 Sobic001G025000--Sobic009G044800 Sobic001G025000--Sobic003G389200 Sobic001G025000--Sobic003G408600 Sobic001G025000--Sobic001G354600 Sobic001G025000--Sobic010G112100 Sobic002G045600 Sobic002G045600 Sobic001G025000--Sobic002G045600 Sobic007G105100 Sobic007G105100 Sobic001G025000--Sobic007G105100 Sobic001G025000--Sobic001G063700
Octagon: transcription factors


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