Gene annotation
Transcriptome id Sobic.006G250300.2,Sobic.006G250300.1
Synonym PEL1, Sb06g031540
Functional annotation pelota, putative, expressed
UniProt A0A1B6PNS5 , A0A1B6PNT3
Pfam PF03465 PF03464 PF03463 PF03464 PF03463
Panther DB PTHR10853
NCBI CDD KOG2869; Meiotic cell division protein Pelota/DOM34
KEGG Orthology K06965; PELO, DOM34, protein pelota
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G27650 : Eukaryotic release factor 1 (eRF1) family protein
RAP-DB (Rice) LOC_Os04g56480.2,LOC_Os04g56480.1 : pelota, putative, expressed
MaizeGDB (Corn) Zm00025a009450
Brachypodium KQJ85088 , KQJ85087
Barley -
Wheat TraesCS2A02G499400 , TraesCS2B02G527600 , TraesCS2B02G527600 , TraesCS2D02G499500
Populus -


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cDNA sequences
Sobic.006G250300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G178300 DNA-binding protein, putative, expressed -
2 Sobic.001G456300 digalactosyldiacylglycerol synthase, chloroplast precursor, putative, expressed K09480: digalactosyldiacylglycerol synthase
3 Sobic.006G056700 tRNA nucleotidyltransferase/polyA polymerase family protein, putative, expressed -
4 Sobic.001G542450 - -
5 Sobic.002G371300 peroxisome assembly protein, putative, expressed K13346: peroxin-10
6 Sobic.009G164000 tentative name(PubMedID : 31536532)@cysteinyl-tRNA synthetase, putative, expressed K01883: CARS, cysteinyl-tRNA synthetase
7 Sobic.003G046300 ubiquitin carboxyl-terminal hydrolase 14, putative, expressed K11836: USP5_13, ubiquitin carboxyl-terminal hydrolase 5/13
8 Sobic.001G430400 Ser/Thr protein phosphatase family protein, putative, expressed -
9 Sobic.004G353000 ABC transporter, ATP-binding protein, putative, expressed K06158: ATP-binding cassette, subfamily F, member 3
10 Sobic.003G155900 mov34/MPN/PAD-1 family protein, expressed K11866: STAMBP, STAM-binding protein
11 Sobic.003G104000 expressed protein K15133: mediator of RNA polymerase II transcription subunit 17
12 Sobic.007G009700 nucleic acid binding protein, putative, expressed K12839: SMNDC1, survival of motor neuron-related-splicing factor 30
13 Sobic.002G371700 signal recognition particle 68 kDa protein, putative, expressed K03107: signal recognition particle subunit SRP68
14 Sobic.003G121300 expressed protein K15170: mediator of RNA polymerase II transcription subunit 27
15 Sobic.009G044800 cullin, putative, expressed K03347: CUL1, cullin 1
16 Sobic.002G256700 ubiquitin carboxyl-terminal hydrolase family protein, expressed K11844: ubiquitin carboxyl-terminal hydrolase 16/45
17 Sobic.010G237900 RNA recognition motif containing protein, putative, expressed -
18 Sobic.004G131800 sirohydrochlorin ferrochelatase, putative, expressed -
19 Sobic.008G063300 exonuclease, putative, expressed K14570: REX1, REXO1, RNA exonuclease 1
20 Sobic.001G244300 GA19388-PA, putative, expressed K10768: alkylated DNA repair protein alkB homolog 6


Gene co-expression network
sample Sobic006G250300 Sobic006G250300 Sobic001G178300 Sobic001G178300 Sobic006G250300--Sobic001G178300 Sobic001G456300 Sobic001G456300 Sobic006G250300--Sobic001G456300 Sobic006G056700 Sobic006G056700 Sobic006G250300--Sobic006G056700 Sobic001G542450 Sobic001G542450 Sobic006G250300--Sobic001G542450 Sobic002G371300 Sobic002G371300 Sobic006G250300--Sobic002G371300 Sobic009G164000 Sobic009G164000 Sobic006G250300--Sobic009G164000 Sobic003G046300 Sobic003G046300 Sobic006G250300--Sobic003G046300 Sobic001G430400 Sobic001G430400 Sobic006G250300--Sobic001G430400 Sobic004G353000 Sobic004G353000 Sobic006G250300--Sobic004G353000 Sobic002G256700 Sobic002G256700 Sobic001G178300--Sobic002G256700 Sobic008G002300 Sobic008G002300 Sobic001G178300--Sobic008G002300 Sobic001G178300--Sobic006G250300 Sobic004G131800 Sobic004G131800 Sobic001G178300--Sobic004G131800 Sobic001G493700 Sobic001G493700 Sobic001G178300--Sobic001G493700 Sobic006G088200 Sobic006G088200 Sobic001G178300--Sobic006G088200 Sobic001G275300 Sobic001G275300 Sobic001G178300--Sobic001G275300 Sobic001G178300--Sobic006G056700 Sobic001G537500 Sobic001G537500 Sobic001G178300--Sobic001G537500 Sobic005G100700 Sobic005G100700 Sobic001G456300--Sobic005G100700 Sobic003G360400 Sobic003G360400 Sobic001G456300--Sobic003G360400 Sobic001G456300--Sobic006G056700 Sobic007G183900 Sobic007G183900 Sobic001G456300--Sobic007G183900 Sobic006G118700 Sobic006G118700 Sobic001G456300--Sobic006G118700 Sobic010G112100 Sobic010G112100 Sobic001G456300--Sobic010G112100 Sobic001G063700 Sobic001G063700 Sobic001G456300--Sobic001G063700 Sobic001G461400 Sobic001G461400 Sobic001G456300--Sobic001G461400 Sobic001G025000 Sobic001G025000 Sobic001G456300--Sobic001G025000 Sobic006G096900 Sobic006G096900 Sobic006G056700--Sobic006G096900 Sobic006G056700--Sobic001G456300 Sobic010G237900 Sobic010G237900 Sobic006G056700--Sobic010G237900 Sobic006G056700--Sobic001G275300 Sobic008G063300 Sobic008G063300 Sobic006G056700--Sobic008G063300 Sobic002G170200 Sobic002G170200 Sobic006G056700--Sobic002G170200 Sobic006G056700--Sobic004G131800 Sobic007G159900 Sobic007G159900 Sobic006G056700--Sobic007G159900 Sobic006G056700--Sobic003G360400 Sobic001G542450--Sobic008G002300 Sobic003G416700 Sobic003G416700 Sobic001G542450--Sobic003G416700 Sobic002G145800 Sobic002G145800 Sobic001G542450--Sobic002G145800 Sobic003G217200 Sobic003G217200 Sobic001G542450--Sobic003G217200 Sobic003G062300 Sobic003G062300 Sobic001G542450--Sobic003G062300 Sobic006G224800 Sobic006G224800 Sobic001G542450--Sobic006G224800 Sobic002G295500 Sobic002G295500 Sobic001G542450--Sobic002G295500 Sobic001G542450--Sobic001G461400 Sobic006G166200 Sobic006G166200 Sobic001G542450--Sobic006G166200 Sobic001G273700 Sobic001G273700 Sobic002G371300--Sobic001G273700 Sobic007G132100 Sobic007G132100 Sobic002G371300--Sobic007G132100 Sobic005G172500 Sobic005G172500 Sobic002G371300--Sobic005G172500 Sobic003G118200 Sobic003G118200 Sobic002G371300--Sobic003G118200 Sobic002G371300--Sobic004G353000 Sobic004G178200 Sobic004G178200 Sobic002G371300--Sobic004G178200 Sobic010G118000 Sobic010G118000 Sobic002G371300--Sobic010G118000 Sobic007G218000 Sobic007G218000 Sobic002G371300--Sobic007G218000 Sobic003G155900 Sobic003G155900 Sobic002G371300--Sobic003G155900 Sobic004G176400 Sobic004G176400 Sobic009G164000--Sobic004G176400 Sobic003G422900 Sobic003G422900 Sobic009G164000--Sobic003G422900 Sobic002G371700 Sobic002G371700 Sobic009G164000--Sobic002G371700 Sobic001G114500 Sobic001G114500 Sobic009G164000--Sobic001G114500 Sobic003G132000 Sobic003G132000 Sobic009G164000--Sobic003G132000 Sobic008G103300 Sobic008G103300 Sobic009G164000--Sobic008G103300 Sobic009G164000--Sobic004G353000 Sobic002G300700 Sobic002G300700 Sobic009G164000--Sobic002G300700 Sobic001G249700 Sobic001G249700 Sobic009G164000--Sobic001G249700 Sobic006G188500 Sobic006G188500 Sobic003G046300--Sobic006G188500 Sobic003G046300--Sobic008G103300 Sobic002G142900 Sobic002G142900 Sobic003G046300--Sobic002G142900 Sobic003G046300--Sobic002G371700 Sobic003G046300--Sobic003G132000 Sobic007G000200 Sobic007G000200 Sobic003G046300--Sobic007G000200 Sobic002G263600 Sobic002G263600 Sobic003G046300--Sobic002G263600 Sobic001G455800 Sobic001G455800 Sobic003G046300--Sobic001G455800 Sobic001G487100 Sobic001G487100 Sobic003G046300--Sobic001G487100 Sobic001G430400--Sobic002G256700 Sobic008G144900 Sobic008G144900 Sobic001G430400--Sobic008G144900 Sobic008G087866 Sobic008G087866 Sobic001G430400--Sobic008G087866 Sobic001G191700 Sobic001G191700 Sobic001G430400--Sobic001G191700 Sobic001G117200 Sobic001G117200 Sobic001G430400--Sobic001G117200 Sobic006G032300 Sobic006G032300 Sobic001G430400--Sobic006G032300 Sobic001G430400--Sobic007G000200 Sobic001G277900 Sobic001G277900 Sobic001G430400--Sobic001G277900 Sobic001G430400--Sobic002G371300 Sobic006G200700 Sobic006G200700 Sobic004G353000--Sobic006G200700 Sobic009G143800 Sobic009G143800 Sobic004G353000--Sobic009G143800 Sobic010G116600 Sobic010G116600 Sobic004G353000--Sobic010G116600 Sobic004G353000--Sobic007G183900 Sobic004G353000--Sobic002G371300 Sobic004G353000--Sobic002G371700 Sobic009G044800 Sobic009G044800 Sobic004G353000--Sobic009G044800 Sobic001G473600 Sobic001G473600 Sobic004G353000--Sobic001G473600 Sobic001G291800 Sobic001G291800 Sobic004G353000--Sobic001G291800
Octagon: transcription factors


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