Gene annotation
Transcriptome id Sobic.003G121300.1
Synonym Sb03g010270
Functional annotation expressed protein
UniProt C5XGH5
Pfam PF11571
Panther DB PTHR13130 PTHR13130:SF4
NCBI CDD -
KEGG Orthology K15170; mediator of RNA polymerase II transcription subunit 27
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G09180 : -
RAP-DB (Rice) LOC_Os01g15850.1 : expressed protein
MaizeGDB (Corn) Zm00025a037348 , Zm00025a027979
Brachypodium KQK03768
Barley HORVU3Hr1G036930.4 , HORVU3Hr1G036930.5 , HORVU3Hr1G036930.6 , HORVU3Hr1G036930.7 , HORVU3Hr1G036930.1 , HORVU3Hr1G036930.2 , HORVU3Hr1G036930.3 , HORVU3Hr1G036930.8 , HORVU3Hr1G036930.9
Wheat TraesCS3B02G210200 , TraesCS3D02G185400 , TraesCS3A02G180500
Populus -


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cDNA sequences
Sobic.003G121300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G114500 ATP binding protein, putative, expressed K06883: uncharacterized protein
2 Sobic.010G237900 RNA recognition motif containing protein, putative, expressed -
3 Sobic.010G029900 leucine carboxyl methyltransferase 1, putative, expressed K15451: PPM2, LCMT2, tRNA wybutosine-synthesizing protein 4
4 Sobic.005G160400 zinc finger, C3HC4 type domain containing protein, expressed K19043: E3 ubiquitin-protein ligase RHF
5 Sobic.003G132000 proteasome subunit, putative, expressed K12176: COPS2, CSN2, COP9 signalosome complex subunit 2
6 Sobic.001G487100 RNA recognition motif containing protein, putative, expressed -
7 Sobic.004G156800 RNA pseudouridine synthase, putative, expressed -
8 Sobic.002G361400 frigida, putative, expressed -
9 Sobic.009G164000 tentative name(PubMedID : 31536532)@cysteinyl-tRNA synthetase, putative, expressed K01883: CARS, cysteinyl-tRNA synthetase
10 Sobic.007G084100 expressed protein -
11 Sobic.006G225300 expressed protein -
12 Sobic.006G049100 expressed protein -
13 Sobic.006G270600 PSF1 - Putative GINS complex subunit, expressed K10732: GINS1, GINS complex subunit 1
14 Sobic.006G219000 OsFBW1 - F-box domain and WD40 repeat containing protein, expressed -
15 Sobic.009G001100 expressed protein -
16 Sobic.007G166400 mediator of RNA polymerase II transcription subunit 31, putative, expressed K15153: MED31, mediator of RNA polymerase II transcription subunit 31
17 Sobic.003G422900 RNA recognition motif containing protein, putative, expressed K14411: RNA-binding protein Musashi
18 Sobic.004G353000 ABC transporter, ATP-binding protein, putative, expressed K06158: ATP-binding cassette, subfamily F, member 3
19 Sobic.006G014100 serine-rich 25 kDa antigen protein, putative, expressed -
20 Sobic.009G092400 zinc finger, C3HC4 type family protein, expressed -


Gene co-expression network
sample Sobic003G121300 Sobic003G121300 Sobic001G114500 Sobic001G114500 Sobic003G121300--Sobic001G114500 Sobic010G237900 Sobic010G237900 Sobic003G121300--Sobic010G237900 Sobic010G029900 Sobic010G029900 Sobic003G121300--Sobic010G029900 Sobic005G160400 Sobic005G160400 Sobic003G121300--Sobic005G160400 Sobic003G132000 Sobic003G132000 Sobic003G121300--Sobic003G132000 Sobic001G487100 Sobic001G487100 Sobic003G121300--Sobic001G487100 Sobic004G156800 Sobic004G156800 Sobic003G121300--Sobic004G156800 Sobic002G361400 Sobic002G361400 Sobic003G121300--Sobic002G361400 Sobic009G164000 Sobic009G164000 Sobic003G121300--Sobic009G164000 Sobic001G114500--Sobic003G132000 Sobic001G114500--Sobic003G121300 Sobic008G103300 Sobic008G103300 Sobic001G114500--Sobic008G103300 Sobic001G114500--Sobic009G164000 Sobic001G473600 Sobic001G473600 Sobic001G114500--Sobic001G473600 Sobic007G084100 Sobic007G084100 Sobic001G114500--Sobic007G084100 Sobic001G114500--Sobic005G160400 Sobic009G258400 Sobic009G258400 Sobic001G114500--Sobic009G258400 Sobic001G114500--Sobic004G156800 Sobic004G129300 Sobic004G129300 Sobic010G237900--Sobic004G129300 Sobic007G191700 Sobic007G191700 Sobic010G237900--Sobic007G191700 Sobic001G002600 Sobic001G002600 Sobic010G237900--Sobic001G002600 Sobic010G237900--Sobic007G084100 Sobic002G425500 Sobic002G425500 Sobic010G237900--Sobic002G425500 Sobic006G014100 Sobic006G014100 Sobic010G237900--Sobic006G014100 Sobic010G237900--Sobic003G121300 Sobic010G237900--Sobic004G156800 Sobic010G145800 Sobic010G145800 Sobic010G237900--Sobic010G145800 Sobic010G029900--Sobic003G121300 Sobic010G029900--Sobic007G191700 Sobic010G029900--Sobic010G237900 Sobic007G041300 Sobic007G041300 Sobic010G029900--Sobic007G041300 Sobic010G095700 Sobic010G095700 Sobic010G029900--Sobic010G095700 Sobic005G015450 Sobic005G015450 Sobic010G029900--Sobic005G015450 Sobic006G121300 Sobic006G121300 Sobic010G029900--Sobic006G121300 Sobic007G075900 Sobic007G075900 Sobic010G029900--Sobic007G075900 Sobic007G102700 Sobic007G102700 Sobic010G029900--Sobic007G102700 Sobic009G092400 Sobic009G092400 Sobic005G160400--Sobic009G092400 Sobic005G160400--Sobic007G084100 Sobic005G160400--Sobic010G237900 Sobic010G092300 Sobic010G092300 Sobic005G160400--Sobic010G092300 Sobic002G347000 Sobic002G347000 Sobic005G160400--Sobic002G347000 Sobic005G160400--Sobic001G473600 Sobic010G265300 Sobic010G265300 Sobic005G160400--Sobic010G265300 Sobic005G160400--Sobic006G121300 Sobic005G160400--Sobic001G114500 Sobic003G132000--Sobic001G114500 Sobic006G270600 Sobic006G270600 Sobic003G132000--Sobic006G270600 Sobic003G046300 Sobic003G046300 Sobic003G132000--Sobic003G046300 Sobic003G132000--Sobic008G103300 Sobic003G132000--Sobic001G487100 Sobic004G192900 Sobic004G192900 Sobic003G132000--Sobic004G192900 Sobic003G132000--Sobic009G164000 Sobic002G371700 Sobic002G371700 Sobic003G132000--Sobic002G371700 Sobic003G363700 Sobic003G363700 Sobic003G132000--Sobic003G363700 Sobic001G487100--Sobic003G132000 Sobic004G320100 Sobic004G320100 Sobic001G487100--Sobic004G320100 Sobic006G049100 Sobic006G049100 Sobic001G487100--Sobic006G049100 Sobic001G487100--Sobic003G046300 Sobic001G487100--Sobic003G121300 Sobic001G506000 Sobic001G506000 Sobic001G487100--Sobic001G506000 Sobic003G128300 Sobic003G128300 Sobic001G487100--Sobic003G128300 Sobic004G256300 Sobic004G256300 Sobic001G487100--Sobic004G256300 Sobic005G115500 Sobic005G115500 Sobic001G487100--Sobic005G115500 Sobic004G156800--Sobic007G102700 Sobic004G156800--Sobic010G237900 Sobic001G259000 Sobic001G259000 Sobic004G156800--Sobic001G259000 Sobic001G527300 Sobic001G527300 Sobic004G156800--Sobic001G527300 Sobic004G156800--Sobic004G129300 Sobic004G156800--Sobic001G114500 Sobic004G156800--Sobic009G164000 Sobic010G007100 Sobic010G007100 Sobic004G156800--Sobic010G007100 Sobic006G204800 Sobic006G204800 Sobic004G156800--Sobic006G204800 Sobic008G153500 Sobic008G153500 Sobic002G361400--Sobic008G153500 Sobic004G040200 Sobic004G040200 Sobic002G361400--Sobic004G040200 Sobic002G361400--Sobic003G121300 Sobic002G111600 Sobic002G111600 Sobic002G361400--Sobic002G111600 Sobic001G522600 Sobic001G522600 Sobic002G361400--Sobic001G522600 Sobic004G356800 Sobic004G356800 Sobic002G361400--Sobic004G356800 Sobic002G361400--Sobic002G371700 Sobic009G095100 Sobic009G095100 Sobic002G361400--Sobic009G095100 Sobic002G361400--Sobic008G103300 Sobic004G176400 Sobic004G176400 Sobic009G164000--Sobic004G176400 Sobic003G422900 Sobic003G422900 Sobic009G164000--Sobic003G422900 Sobic009G164000--Sobic002G371700 Sobic009G164000--Sobic001G114500 Sobic009G164000--Sobic003G132000 Sobic009G164000--Sobic008G103300 Sobic004G353000 Sobic004G353000 Sobic009G164000--Sobic004G353000 Sobic002G300700 Sobic002G300700 Sobic009G164000--Sobic002G300700 Sobic001G249700 Sobic001G249700 Sobic009G164000--Sobic001G249700
Octagon: transcription factors


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