Gene annotation
Transcriptome id Sobic.006G219000.1
Synonym Sb06g028850, FBX2
Functional annotation OsFBW1 - F-box domain and WD40 repeat containing protein, expressed
UniProt A0A1Z5RF19
Pfam PF00646 PF00400
Panther DB PTHR22844 PTHR22844:SF160
NCBI CDD KOG0274; Cdc4 and related F-box and WD-40 proteins
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT5G21040 : F-box protein 2
RAP-DB (Rice) LOC_Os04g52870.1 : OsFBW1 - F-box domain and WD40 repeat containing protein, expressed
MaizeGDB (Corn) Zm00025a057049 , Zm00025a009743
Brachypodium PNT61867 , PNT61866 , PNT61869 , PNT61868 , KQJ84648 , KQJ84649 , KQJ84650
Barley HORVU2Hr1G103700.4 , HORVU2Hr1G103700.1 , HORVU2Hr1G103700.3 , HORVU2Hr1G103700.2
Wheat TraesCS2D02G463700
Populus -


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cDNA sequences
Sobic.006G219000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G121300 expressed protein K15170: mediator of RNA polymerase II transcription subunit 27
2 Sobic.009G207200 ER lumen protein retaining receptor, putative, expressed K10949: ER lumen protein retaining receptor
3 Sobic.007G189000 WTG1(Ortholog in rice:Wang et al. (2017))(PubMedID : 31659909)@ubiquitin thioesterase otubain-like, putative, expressed K09602: ubiquitin thioesterase protein OTUB1
4 Sobic.001G484700 expressed protein K15688: E3 ubiquitin-protein ligase MUL1
5 Sobic.001G507400 PHD-finger domain containing protein, putative, expressed K11346: inhibitor of growth protein 4
6 Sobic.001G294300 Cellular calcium signals(PubMedID : 19860013)@calcineurin B, putative, expressed K06268: PPP3R, serine/threonine-protein phosphatase 2B regulatory subunit
7 Sobic.001G216100 expressed protein -
8 Sobic.010G068700 transporter family protein, putative, expressed K15281: solute carrier family 35
9 Sobic.006G121300 SWIRM domain containing protein, expressed K11649: SWI/SNF related-matrix-associated actin-dependent regulator of chromatin subfamily C
10 Sobic.001G061200 25.3 kDa vesicle transport protein, putative, expressed K08517: vesicle transport protein SEC22
11 Sobic.003G374000 ubiquitin-like domain-containing CTD phosphatase 1, putative, expressed K17618: ubiquitin-like domain-containing CTD phosphatase 1
12 Sobic.006G049100 expressed protein -
13 Sobic.006G270600 PSF1 - Putative GINS complex subunit, expressed K10732: GINS1, GINS complex subunit 1
14 Sobic.007G056500 cullin, putative, expressed K03869: cullin 3
15 Sobic.006G094600 LSM domain containing protein, expressed K12620: U6 snRNA-associated Sm-like protein LSm1
16 Sobic.001G395100 - K12835: DDX42, ATP-dependent RNA helicase DDX42
17 Sobic.001G341500 transcription initiation factor IID, putative, expressed K03133: TAF9B, transcription initiation factor TFIID subunit 9B
18 Sobic.006G011000 Putative splicing factor(PubMedID : 24356560)@RNA recognition motif containing protein, putative, expressed K12893: splicing factor, arginine/serine-rich 4/5/6
19 Sobic.008G083200 transcription factor, putative, expressed K09060: plant G-box-binding factor
20 Sobic.003G038600 phosducin-like protein 3, putative, expressed -


Gene co-expression network
sample Sobic006G219000 Sobic006G219000 Sobic003G121300 Sobic003G121300 Sobic006G219000--Sobic003G121300 Sobic009G207200 Sobic009G207200 Sobic006G219000--Sobic009G207200 Sobic007G189000 Sobic007G189000 Sobic006G219000--Sobic007G189000 Sobic001G484700 Sobic001G484700 Sobic006G219000--Sobic001G484700 Sobic001G507400 Sobic001G507400 Sobic006G219000--Sobic001G507400 Sobic001G294300 Sobic001G294300 Sobic006G219000--Sobic001G294300 Sobic001G216100 Sobic001G216100 Sobic006G219000--Sobic001G216100 Sobic010G068700 Sobic010G068700 Sobic006G219000--Sobic010G068700 Sobic006G121300 Sobic006G121300 Sobic006G219000--Sobic006G121300 Sobic001G114500 Sobic001G114500 Sobic003G121300--Sobic001G114500 Sobic010G237900 Sobic010G237900 Sobic003G121300--Sobic010G237900 Sobic010G029900 Sobic010G029900 Sobic003G121300--Sobic010G029900 Sobic005G160400 Sobic005G160400 Sobic003G121300--Sobic005G160400 Sobic003G132000 Sobic003G132000 Sobic003G121300--Sobic003G132000 Sobic001G487100 Sobic001G487100 Sobic003G121300--Sobic001G487100 Sobic004G156800 Sobic004G156800 Sobic003G121300--Sobic004G156800 Sobic002G361400 Sobic002G361400 Sobic003G121300--Sobic002G361400 Sobic009G164000 Sobic009G164000 Sobic003G121300--Sobic009G164000 Sobic006G094600 Sobic006G094600 Sobic009G207200--Sobic006G094600 Sobic001G061200 Sobic001G061200 Sobic009G207200--Sobic001G061200 Sobic001G358500 Sobic001G358500 Sobic009G207200--Sobic001G358500 Sobic002G029300 Sobic002G029300 Sobic009G207200--Sobic002G029300 Sobic003G005900 Sobic003G005900 Sobic009G207200--Sobic003G005900 Sobic007G217400 Sobic007G217400 Sobic009G207200--Sobic007G217400 Sobic008G072200 Sobic008G072200 Sobic009G207200--Sobic008G072200 Sobic004G075200 Sobic004G075200 Sobic009G207200--Sobic004G075200 Sobic007G022700 Sobic007G022700 Sobic009G207200--Sobic007G022700 Sobic007G056500 Sobic007G056500 Sobic007G189000--Sobic007G056500 Sobic007G105900 Sobic007G105900 Sobic007G189000--Sobic007G105900 Sobic009G124700 Sobic009G124700 Sobic007G189000--Sobic009G124700 Sobic001G169600 Sobic001G169600 Sobic007G189000--Sobic001G169600 Sobic001G106100 Sobic001G106100 Sobic007G189000--Sobic001G106100 Sobic002G347000 Sobic002G347000 Sobic007G189000--Sobic002G347000 Sobic007G189000--Sobic006G219000 Sobic009G224000 Sobic009G224000 Sobic007G189000--Sobic009G224000 Sobic009G160600 Sobic009G160600 Sobic007G189000--Sobic009G160600 Sobic001G014200 Sobic001G014200 Sobic001G484700--Sobic001G014200 Sobic001G484700--Sobic006G219000 Sobic001G484700--Sobic010G068700 Sobic001G031100 Sobic001G031100 Sobic001G484700--Sobic001G031100 Sobic001G480100 Sobic001G480100 Sobic001G484700--Sobic001G480100 Sobic001G484700--Sobic007G105900 Sobic001G484700--Sobic001G216100 Sobic001G484700--Sobic001G294300 Sobic009G139300 Sobic009G139300 Sobic001G484700--Sobic009G139300 Sobic001G038100 Sobic001G038100 Sobic001G507400--Sobic001G038100 Sobic007G117100 Sobic007G117100 Sobic001G507400--Sobic007G117100 Sobic007G191700 Sobic007G191700 Sobic001G507400--Sobic007G191700 Sobic006G120800 Sobic006G120800 Sobic001G507400--Sobic006G120800 Sobic009G258400 Sobic009G258400 Sobic001G507400--Sobic009G258400 Sobic002G014700 Sobic002G014700 Sobic001G507400--Sobic002G014700 Sobic003G420700 Sobic003G420700 Sobic001G507400--Sobic003G420700 Sobic002G204000 Sobic002G204000 Sobic001G507400--Sobic002G204000 Sobic010G154000 Sobic010G154000 Sobic001G507400--Sobic010G154000 Sobic003G119700 Sobic003G119700 Sobic001G294300--Sobic003G119700 Sobic010G235200 Sobic010G235200 Sobic001G294300--Sobic010G235200 Sobic002G056701 Sobic002G056701 Sobic001G294300--Sobic002G056701 Sobic004G316700 Sobic004G316700 Sobic001G294300--Sobic004G316700 Sobic001G294300--Sobic006G219000 Sobic008G124900 Sobic008G124900 Sobic001G294300--Sobic008G124900 Sobic001G441400 Sobic001G441400 Sobic001G294300--Sobic001G441400 Sobic010G275400 Sobic010G275400 Sobic001G294300--Sobic010G275400 Sobic006G281700 Sobic006G281700 Sobic001G294300--Sobic006G281700 Sobic001G216100--Sobic006G121300 Sobic010G028300 Sobic010G028300 Sobic001G216100--Sobic010G028300 Sobic002G383300 Sobic002G383300 Sobic001G216100--Sobic002G383300 Sobic001G395100 Sobic001G395100 Sobic001G216100--Sobic001G395100 Sobic003G439800 Sobic003G439800 Sobic001G216100--Sobic003G439800 Sobic007G075900 Sobic007G075900 Sobic001G216100--Sobic007G075900 Sobic001G216100--Sobic007G056500 Sobic004G266900 Sobic004G266900 Sobic001G216100--Sobic004G266900 Sobic009G036200 Sobic009G036200 Sobic001G216100--Sobic009G036200 Sobic004G198600 Sobic004G198600 Sobic010G068700--Sobic004G198600 Sobic002G355800 Sobic002G355800 Sobic010G068700--Sobic002G355800 Sobic009G228000 Sobic009G228000 Sobic010G068700--Sobic009G228000 Sobic007G162100 Sobic007G162100 Sobic010G068700--Sobic007G162100 Sobic003G182300 Sobic003G182300 Sobic010G068700--Sobic003G182300 Sobic001G049400 Sobic001G049400 Sobic010G068700--Sobic001G049400 Sobic006G039400 Sobic006G039400 Sobic010G068700--Sobic006G039400 Sobic010G068700--Sobic001G014200 Sobic006G174850 Sobic006G174850 Sobic010G068700--Sobic006G174850 Sobic006G121300--Sobic001G395100 Sobic002G034600 Sobic002G034600 Sobic006G121300--Sobic002G034600 Sobic006G121300--Sobic001G216100 Sobic006G121300--Sobic010G028300 Sobic006G121300--Sobic007G056500 Sobic001G473600 Sobic001G473600 Sobic006G121300--Sobic001G473600 Sobic008G179700 Sobic008G179700 Sobic006G121300--Sobic008G179700 Sobic003G401100 Sobic003G401100 Sobic006G121300--Sobic003G401100 Sobic006G121300--Sobic005G160400
Octagon: transcription factors


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