Gene annotation
Transcriptome id Sobic.003G374000.1
Synonym Sb03g041440
Functional annotation ubiquitin-like domain-containing CTD phosphatase 1, putative, expressed
UniProt C5XRC2
Pfam PF03031
Panther DB PTHR32054:SF0 PTHR32054
NCBI CDD KOG1605; TFIIF-interacting CTD phosphatase, including NLI-interacting factor (involved in RNA polymerase II regulation)
KEGG Orthology K17618; ubiquitin-like domain-containing CTD phosphatase 1
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G06599 : ubiquitin family protein
RAP-DB (Rice) LOC_Os01g65450.1 : ubiquitin-like domain-containing CTD phosphatase 1, putative, expressed
MaizeGDB (Corn) Zm00025a039529
Brachypodium PNT73288 , PNT73289 , PNT73290
Barley HORVU3Hr1G082010.1 , HORVU3Hr1G082010.2
Wheat TraesCS3B02G418100 , TraesCS3A02G386000 , TraesCS3D02G379000
Populus -


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cDNA sequences
Sobic.003G374000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G118000 double-stranded RNA binding motif containing protein, expressed -
2 Sobic.009G192000 transcription initiation factor IIF beta subunit, putative, expressed K03139: TFIIF2, GTF2F2, transcription initiation factor TFIIF subunit beta
3 Sobic.010G205300 secreted salivary protein, putative, expressed -
4 Sobic.002G268400 expressed protein -
5 Sobic.001G341500 transcription initiation factor IID, putative, expressed K03133: TAF9B, transcription initiation factor TFIID subunit 9B
6 Sobic.007G167900 signal peptide peptidase domain containing protein, expressed K09598: signal peptide peptidase-like 3
7 Sobic.003G338500 endoplasmic reticulum-Golgi intermediate compartment protein 3, putative, expressed -
8 Sobic.001G428800 vacuolar sorting protein, putative, expressed -
9 Sobic.008G137600 RNA recognition motif containing protein, expressed K12900: FUS-interacting serine-arginine-rich protein 1
10 Sobic.001G294900 KH domain containing protein, putative, expressed K13162: poly(rC)-binding protein 2
11 Sobic.001G332300 expressed protein -
12 Sobic.006G094600 LSM domain containing protein, expressed K12620: U6 snRNA-associated Sm-like protein LSm1
13 Sobic.003G349300 serine/threonine-protein kinase AFC1, putative, expressed K08287: dual-specificity kinase
14 Sobic.001G404200 mitochondrial import inner membrane translocase subunit Tim17, putative, expressed K17790: mitochondrial import inner membrane translocase subunit TIM22
15 Sobic.008G110500 UDP-N-acetylglucosamine transferase subunit ALG13, putative, expressed K07432: beta-1,4-N-acetylglucosaminyltransferase
16 Sobic.010G197900 expressed protein -
17 Sobic.001G358500 GA20734-PA, putative, expressed -
18 Sobic.004G232800 expressed protein -
19 Sobic.008G145100 glycosyl transferase, group 1 domain containing protein, expressed K03844: alpha-1,2-mannosyltransferase
20 Sobic.008G129600 glucosidase II beta subunit-like domain containing protein, expressed K10088: protein OS-9


Gene co-expression network
sample Sobic003G374000 Sobic003G374000 Sobic007G118000 Sobic007G118000 Sobic003G374000--Sobic007G118000 Sobic009G192000 Sobic009G192000 Sobic003G374000--Sobic009G192000 Sobic010G205300 Sobic010G205300 Sobic003G374000--Sobic010G205300 Sobic002G268400 Sobic002G268400 Sobic003G374000--Sobic002G268400 Sobic001G341500 Sobic001G341500 Sobic003G374000--Sobic001G341500 Sobic007G167900 Sobic007G167900 Sobic003G374000--Sobic007G167900 Sobic003G338500 Sobic003G338500 Sobic003G374000--Sobic003G338500 Sobic001G428800 Sobic001G428800 Sobic003G374000--Sobic001G428800 Sobic008G137600 Sobic008G137600 Sobic003G374000--Sobic008G137600 Sobic007G045600 Sobic007G045600 Sobic007G118000--Sobic007G045600 Sobic001G033500 Sobic001G033500 Sobic007G118000--Sobic001G033500 Sobic001G402300 Sobic001G402300 Sobic007G118000--Sobic001G402300 Sobic007G118000--Sobic003G374000 Sobic004G072800 Sobic004G072800 Sobic007G118000--Sobic004G072800 Sobic002G281300 Sobic002G281300 Sobic007G118000--Sobic002G281300 Sobic001G067900 Sobic001G067900 Sobic007G118000--Sobic001G067900 Sobic004G141700 Sobic004G141700 Sobic007G118000--Sobic004G141700 Sobic001G323300 Sobic001G323300 Sobic007G118000--Sobic001G323300 Sobic001G031100 Sobic001G031100 Sobic009G192000--Sobic001G031100 Sobic009G192000--Sobic007G167900 Sobic010G020400 Sobic010G020400 Sobic009G192000--Sobic010G020400 Sobic003G349300 Sobic003G349300 Sobic009G192000--Sobic003G349300 Sobic001G014800 Sobic001G014800 Sobic009G192000--Sobic001G014800 Sobic009G192000--Sobic003G338500 Sobic006G180000 Sobic006G180000 Sobic009G192000--Sobic006G180000 Sobic009G192000--Sobic010G205300 Sobic009G192000--Sobic003G374000 Sobic004G232800 Sobic004G232800 Sobic010G205300--Sobic004G232800 Sobic010G205300--Sobic003G349300 Sobic007G168600 Sobic007G168600 Sobic010G205300--Sobic007G168600 Sobic001G502200 Sobic001G502200 Sobic010G205300--Sobic001G502200 Sobic010G205300--Sobic002G281300 Sobic004G356900 Sobic004G356900 Sobic010G205300--Sobic004G356900 Sobic003G261400 Sobic003G261400 Sobic010G205300--Sobic003G261400 Sobic004G194900 Sobic004G194900 Sobic010G205300--Sobic004G194900 Sobic010G205300--Sobic001G067900 Sobic010G057900 Sobic010G057900 Sobic002G268400--Sobic010G057900 Sobic001G152000 Sobic001G152000 Sobic002G268400--Sobic001G152000 Sobic004G074300 Sobic004G074300 Sobic002G268400--Sobic004G074300 Sobic006G252100 Sobic006G252100 Sobic002G268400--Sobic006G252100 Sobic009G033900 Sobic009G033900 Sobic002G268400--Sobic009G033900 Sobic006G270900 Sobic006G270900 Sobic002G268400--Sobic006G270900 Sobic006G183000 Sobic006G183000 Sobic002G268400--Sobic006G183000 Sobic002G268400--Sobic004G356900 Sobic003G439800 Sobic003G439800 Sobic002G268400--Sobic003G439800 Sobic001G341500--Sobic007G167900 Sobic001G207500 Sobic001G207500 Sobic001G341500--Sobic001G207500 Sobic001G341500--Sobic003G374000 Sobic001G341500--Sobic009G192000 Sobic006G049700 Sobic006G049700 Sobic001G341500--Sobic006G049700 Sobic001G206900 Sobic001G206900 Sobic001G341500--Sobic001G206900 Sobic009G149500 Sobic009G149500 Sobic001G341500--Sobic009G149500 Sobic004G092500 Sobic004G092500 Sobic001G341500--Sobic004G092500 Sobic003G127300 Sobic003G127300 Sobic001G341500--Sobic003G127300 Sobic001G085100 Sobic001G085100 Sobic007G167900--Sobic001G085100 Sobic007G167900--Sobic009G192000 Sobic007G167900--Sobic004G092500 Sobic007G167900--Sobic001G206900 Sobic002G047700 Sobic002G047700 Sobic007G167900--Sobic002G047700 Sobic006G101700 Sobic006G101700 Sobic007G167900--Sobic006G101700 Sobic007G167900--Sobic010G020400 Sobic009G222500 Sobic009G222500 Sobic007G167900--Sobic009G222500 Sobic007G167900--Sobic001G341500 Sobic010G223300 Sobic010G223300 Sobic003G338500--Sobic010G223300 Sobic010G261600 Sobic010G261600 Sobic003G338500--Sobic010G261600 Sobic003G338500--Sobic010G020400 Sobic004G275700 Sobic004G275700 Sobic003G338500--Sobic004G275700 Sobic008G055900 Sobic008G055900 Sobic003G338500--Sobic008G055900 Sobic003G338500--Sobic009G192000 Sobic009G224000 Sobic009G224000 Sobic003G338500--Sobic009G224000 Sobic001G049400 Sobic001G049400 Sobic003G338500--Sobic001G049400 Sobic002G008800 Sobic002G008800 Sobic003G338500--Sobic002G008800 Sobic001G358500 Sobic001G358500 Sobic001G428800--Sobic001G358500 Sobic001G449900 Sobic001G449900 Sobic001G428800--Sobic001G449900 Sobic010G230600 Sobic010G230600 Sobic001G428800--Sobic010G230600 Sobic001G428800--Sobic004G092500 Sobic001G428800--Sobic010G223300 Sobic001G211900 Sobic001G211900 Sobic001G428800--Sobic001G211900 Sobic001G099900 Sobic001G099900 Sobic001G428800--Sobic001G099900 Sobic001G428800--Sobic010G020400 Sobic009G139300 Sobic009G139300 Sobic001G428800--Sobic009G139300 Sobic001G532100 Sobic001G532100 Sobic008G137600--Sobic001G532100 Sobic008G137600--Sobic001G402300 Sobic001G294900 Sobic001G294900 Sobic008G137600--Sobic001G294900 Sobic002G428200 Sobic002G428200 Sobic008G137600--Sobic002G428200 Sobic003G273400 Sobic003G273400 Sobic008G137600--Sobic003G273400 Sobic006G109700 Sobic006G109700 Sobic008G137600--Sobic006G109700 Sobic002G341800 Sobic002G341800 Sobic008G137600--Sobic002G341800 Sobic001G404100 Sobic001G404100 Sobic008G137600--Sobic001G404100 Sobic008G137600--Sobic001G502200
Octagon: transcription factors


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