Gene annotation
Transcriptome id Sobic.009G192000.1
Synonym Sb09g025080
Functional annotation transcription initiation factor IIF beta subunit, putative, expressed
UniProt C5Z0T6
Pfam PF02270
Panther DB PTHR10445 PTHR10445:SF1
NCBI CDD KOG2905; Transcription initiation factor IIF, small subunit (RAP30)
KEGG Orthology K03139; TFIIF2, GTF2F2, transcription initiation factor TFIIF subunit beta
Gene Ontology GO:0006367; transcription initiation from RNA polymerase II promoter GO:0006366transcription by RNA polymerase II GO:0005674transcription factor TFIIF complex


Orthologs (automatic annotation)
TAIR AT1G75510 : Transcription initiation factor IIF, beta subunit
RAP-DB (Rice) LOC_Os05g43450.1 : transcription initiation factor IIF beta subunit, putative, expressed
MaizeGDB (Corn) Zm00025a037903 , Zm00025a044183
Brachypodium KQK09979 , PNT72946 , KQK05488
Barley -
Wheat TraesCS1B02G341400 , TraesCS1A02G327800 , TraesCS1B02G341100
Populus -


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cDNA sequences
Sobic.009G192000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G031100 dolichyl-phosphate beta-glycosyltransferase, putative, expressed K00721: dolichol-phosphate mannosyltransferase
2 Sobic.007G167900 signal peptide peptidase domain containing protein, expressed K09598: signal peptide peptidase-like 3
3 Sobic.010G020400 HEAT repeat family protein, putative, expressed K03456: serine/threonine-protein phosphatase 2A regulatory subunit A
4 Sobic.003G349300 serine/threonine-protein kinase AFC1, putative, expressed K08287: dual-specificity kinase
5 Sobic.001G014800 tetratricopeptide repeat containing protein, putative, expressed -
6 Sobic.003G338500 endoplasmic reticulum-Golgi intermediate compartment protein 3, putative, expressed -
7 Sobic.006G180000 syntaxin-18, putative, expressed K08492: syntaxin 18
8 Sobic.010G205300 secreted salivary protein, putative, expressed -
9 Sobic.003G374000 ubiquitin-like domain-containing CTD phosphatase 1, putative, expressed K17618: ubiquitin-like domain-containing CTD phosphatase 1
10 Sobic.001G261436 - -
11 Sobic.006G049700 SAM domain family protein, expressed -
12 Sobic.009G149500 coiled-coil domain-containing protein 47 precursor, putative, expressed -
13 Sobic.010G057900 26S protease regulatory subunit 6A, putative, expressed K03065: PSMC3, 26S proteasome regulatory subunit T5
14 Sobic.002G117400 expressed protein -
15 Sobic.001G007000 -(PubMedID : 26976818)@4-nitrophenylphosphatase, putative, expressed K19269: PGP, phosphoglycolate phosphatase
16 Sobic.009G068500 expressed protein -
17 Sobic.002G047700 CK1_CaseinKinase_1a.6 - CK1 includes the casein kinase 1 kinases, expressed -
18 Sobic.009G222500 expressed protein -
19 Sobic.006G101700 ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed K11842: ubiquitin carboxyl-terminal hydrolase 12/46
20 Sobic.004G194900 expressed protein -


Gene co-expression network
sample Sobic009G192000 Sobic009G192000 Sobic001G031100 Sobic001G031100 Sobic009G192000--Sobic001G031100 Sobic007G167900 Sobic007G167900 Sobic009G192000--Sobic007G167900 Sobic010G020400 Sobic010G020400 Sobic009G192000--Sobic010G020400 Sobic003G349300 Sobic003G349300 Sobic009G192000--Sobic003G349300 Sobic001G014800 Sobic001G014800 Sobic009G192000--Sobic001G014800 Sobic003G338500 Sobic003G338500 Sobic009G192000--Sobic003G338500 Sobic006G180000 Sobic006G180000 Sobic009G192000--Sobic006G180000 Sobic010G205300 Sobic010G205300 Sobic009G192000--Sobic010G205300 Sobic003G374000 Sobic003G374000 Sobic009G192000--Sobic003G374000 Sobic001G031100--Sobic009G192000 Sobic003G264200 Sobic003G264200 Sobic001G031100--Sobic003G264200 Sobic001G007000 Sobic001G007000 Sobic001G031100--Sobic001G007000 Sobic004G054100 Sobic004G054100 Sobic001G031100--Sobic004G054100 Sobic002G047700 Sobic002G047700 Sobic001G031100--Sobic002G047700 Sobic009G222500 Sobic009G222500 Sobic001G031100--Sobic009G222500 Sobic001G080700 Sobic001G080700 Sobic001G031100--Sobic001G080700 Sobic009G068500 Sobic009G068500 Sobic001G031100--Sobic009G068500 Sobic010G251000 Sobic010G251000 Sobic001G031100--Sobic010G251000 Sobic001G085100 Sobic001G085100 Sobic007G167900--Sobic001G085100 Sobic007G167900--Sobic009G192000 Sobic004G092500 Sobic004G092500 Sobic007G167900--Sobic004G092500 Sobic001G206900 Sobic001G206900 Sobic007G167900--Sobic001G206900 Sobic007G167900--Sobic002G047700 Sobic006G101700 Sobic006G101700 Sobic007G167900--Sobic006G101700 Sobic007G167900--Sobic010G020400 Sobic007G167900--Sobic009G222500 Sobic001G341500 Sobic001G341500 Sobic007G167900--Sobic001G341500 Sobic002G020700 Sobic002G020700 Sobic010G020400--Sobic002G020700 Sobic001G049400 Sobic001G049400 Sobic010G020400--Sobic001G049400 Sobic010G020400--Sobic003G338500 Sobic010G020400--Sobic001G014800 Sobic002G008800 Sobic002G008800 Sobic010G020400--Sobic002G008800 Sobic008G055900 Sobic008G055900 Sobic010G020400--Sobic008G055900 Sobic008G033500 Sobic008G033500 Sobic010G020400--Sobic008G033500 Sobic001G333100 Sobic001G333100 Sobic010G020400--Sobic001G333100 Sobic010G223300 Sobic010G223300 Sobic010G020400--Sobic010G223300 Sobic003G349300--Sobic010G205300 Sobic001G294900 Sobic001G294900 Sobic003G349300--Sobic001G294900 Sobic009G135600 Sobic009G135600 Sobic003G349300--Sobic009G135600 Sobic001G388200 Sobic001G388200 Sobic003G349300--Sobic001G388200 Sobic004G181900 Sobic004G181900 Sobic003G349300--Sobic004G181900 Sobic003G349300--Sobic009G192000 Sobic001G283200 Sobic001G283200 Sobic003G349300--Sobic001G283200 Sobic003G261400 Sobic003G261400 Sobic003G349300--Sobic003G261400 Sobic007G168600 Sobic007G168600 Sobic003G349300--Sobic007G168600 Sobic001G014800--Sobic010G020400 Sobic009G084000 Sobic009G084000 Sobic001G014800--Sobic009G084000 Sobic001G014800--Sobic008G033500 Sobic001G014800--Sobic001G333100 Sobic001G014800--Sobic009G192000 Sobic001G014800--Sobic002G047700 Sobic001G014800--Sobic006G180000 Sobic006G201800 Sobic006G201800 Sobic001G014800--Sobic006G201800 Sobic002G263600 Sobic002G263600 Sobic001G014800--Sobic002G263600 Sobic003G338500--Sobic010G223300 Sobic010G261600 Sobic010G261600 Sobic003G338500--Sobic010G261600 Sobic003G338500--Sobic010G020400 Sobic004G275700 Sobic004G275700 Sobic003G338500--Sobic004G275700 Sobic003G338500--Sobic008G055900 Sobic003G338500--Sobic009G192000 Sobic009G224000 Sobic009G224000 Sobic003G338500--Sobic009G224000 Sobic003G338500--Sobic001G049400 Sobic003G338500--Sobic002G008800 Sobic002G303600 Sobic002G303600 Sobic006G180000--Sobic002G303600 Sobic006G180000--Sobic002G047700 Sobic003G264100 Sobic003G264100 Sobic006G180000--Sobic003G264100 Sobic006G180000--Sobic010G223300 Sobic009G092400 Sobic009G092400 Sobic006G180000--Sobic009G092400 Sobic006G180000--Sobic001G007000 Sobic006G180000--Sobic010G020400 Sobic006G180000--Sobic004G092500 Sobic004G028100 Sobic004G028100 Sobic006G180000--Sobic004G028100 Sobic004G232800 Sobic004G232800 Sobic010G205300--Sobic004G232800 Sobic010G205300--Sobic003G349300 Sobic010G205300--Sobic007G168600 Sobic001G502200 Sobic001G502200 Sobic010G205300--Sobic001G502200 Sobic002G281300 Sobic002G281300 Sobic010G205300--Sobic002G281300 Sobic004G356900 Sobic004G356900 Sobic010G205300--Sobic004G356900 Sobic010G205300--Sobic003G261400 Sobic004G194900 Sobic004G194900 Sobic010G205300--Sobic004G194900 Sobic001G067900 Sobic001G067900 Sobic010G205300--Sobic001G067900 Sobic007G118000 Sobic007G118000 Sobic003G374000--Sobic007G118000 Sobic003G374000--Sobic009G192000 Sobic003G374000--Sobic010G205300 Sobic002G268400 Sobic002G268400 Sobic003G374000--Sobic002G268400 Sobic003G374000--Sobic001G341500 Sobic003G374000--Sobic007G167900 Sobic003G374000--Sobic003G338500 Sobic001G428800 Sobic001G428800 Sobic003G374000--Sobic001G428800 Sobic008G137600 Sobic008G137600 Sobic003G374000--Sobic008G137600
Octagon: transcription factors


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