Gene annotation
Transcriptome id Sobic.006G180000.2,Sobic.006G180000.3,Sobic.006G180000.1
Synonym UFE1, SYP81, ATSYP81, ATUFE1, Sb06g025460
Functional annotation syntaxin-18, putative, expressed
UniProt A0A1B6PMM1 , A0A1Z5REL3 , A0A1Z5REG7
Pfam PF10496
Panther DB PTHR15959 PTHR15959:SF0
NCBI CDD KOG3894; SNARE protein Syntaxin 18/UFE1
KEGG Orthology K08492; syntaxin 18
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G51740 : syntaxin of plants 81
RAP-DB (Rice) LOC_Os12g05810.1,LOC_Os04g44810.1 : syntaxin-18, putative, expressed
MaizeGDB (Corn) Zm00025a056800 , Zm00025a056570
Brachypodium KQJ83733
Barley HORVU2Hr1G091230.1 , HORVU2Hr1G091230.3 , HORVU2Hr1G091230.2 , HORVU2Hr1G091230.5 , HORVU2Hr1G091230.4
Wheat TraesCS2D02G368900 , TraesCS2A02G372700 , TraesCS2B02G389700
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G303600 -(PubMedID : 29147737)@RIN3, putative, expressed K10636: AMFR, autocrine motility factor receptor
2 Sobic.002G047700 CK1_CaseinKinase_1a.6 - CK1 includes the casein kinase 1 kinases, expressed -
3 Sobic.003G264100 - K10843: ERCC3, DNA excision repair protein ERCC-3
4 Sobic.010G223300 CDP-alcohol phosphatidyltransferase, putative, expressed K00999: CDP-diacylglycerol--inositol 3-phosphatidyltransferase
5 Sobic.009G092400 zinc finger, C3HC4 type family protein, expressed -
6 Sobic.001G007000 -(PubMedID : 26976818)@4-nitrophenylphosphatase, putative, expressed K19269: PGP, phosphoglycolate phosphatase
7 Sobic.010G020400 HEAT repeat family protein, putative, expressed K03456: serine/threonine-protein phosphatase 2A regulatory subunit A
8 Sobic.004G092500 OsPP2Ac-1 - Phosphatase 2A isoform 1 belonging to family 1, expressed K04382: serine/threonine-protein phosphatase 2A catalytic subunit
9 Sobic.004G028100 expressed protein -
10 Sobic.002G347000 WD domain, G-beta repeat domain containing protein, expressed K14963: WDR5, SWD3, COMPASS component SWD3
11 Sobic.001G014800 tetratricopeptide repeat containing protein, putative, expressed -
12 Sobic.006G201800 scramblase, putative, expressed -
13 Sobic.007G167900 signal peptide peptidase domain containing protein, expressed K09598: signal peptide peptidase-like 3
14 Sobic.009G192000 transcription initiation factor IIF beta subunit, putative, expressed K03139: TFIIF2, GTF2F2, transcription initiation factor TFIIF subunit beta
15 Sobic.003G143200 expressed protein -
16 Sobic.004G178200 ligatin, putative, expressed K15027: translation initiation factor 2D
17 Sobic.001G413200 expressed protein -
18 Sobic.001G085100 expressed protein -
19 Sobic.004G206700 vesicle transport protein GOT1B, putative, expressed -
20 Sobic.006G196300 glycosyl transferase, group 1 domain containing protein, expressed K03843: alpha-1,3/alpha-1,6-mannosyltransferase


Gene co-expression network
sample Sobic006G180000 Sobic006G180000 Sobic002G303600 Sobic002G303600 Sobic006G180000--Sobic002G303600 Sobic002G047700 Sobic002G047700 Sobic006G180000--Sobic002G047700 Sobic003G264100 Sobic003G264100 Sobic006G180000--Sobic003G264100 Sobic010G223300 Sobic010G223300 Sobic006G180000--Sobic010G223300 Sobic009G092400 Sobic009G092400 Sobic006G180000--Sobic009G092400 Sobic001G007000 Sobic001G007000 Sobic006G180000--Sobic001G007000 Sobic010G020400 Sobic010G020400 Sobic006G180000--Sobic010G020400 Sobic004G092500 Sobic004G092500 Sobic006G180000--Sobic004G092500 Sobic004G028100 Sobic004G028100 Sobic006G180000--Sobic004G028100 Sobic010G261600 Sobic010G261600 Sobic002G303600--Sobic010G261600 Sobic004G323700 Sobic004G323700 Sobic002G303600--Sobic004G323700 Sobic004G178200 Sobic004G178200 Sobic002G303600--Sobic004G178200 Sobic002G303600--Sobic006G180000 Sobic007G218000 Sobic007G218000 Sobic002G303600--Sobic007G218000 Sobic002G303600--Sobic004G028100 Sobic003G422900 Sobic003G422900 Sobic002G303600--Sobic003G422900 Sobic002G303600--Sobic009G092400 Sobic004G003401 Sobic004G003401 Sobic002G303600--Sobic004G003401 Sobic002G047700--Sobic006G180000 Sobic002G047700--Sobic010G020400 Sobic002G047700--Sobic001G007000 Sobic001G031100 Sobic001G031100 Sobic002G047700--Sobic001G031100 Sobic007G167900 Sobic007G167900 Sobic002G047700--Sobic007G167900 Sobic008G070800 Sobic008G070800 Sobic002G047700--Sobic008G070800 Sobic001G014800 Sobic001G014800 Sobic002G047700--Sobic001G014800 Sobic003G264200 Sobic003G264200 Sobic002G047700--Sobic003G264200 Sobic009G044800 Sobic009G044800 Sobic002G047700--Sobic009G044800 Sobic001G333100 Sobic001G333100 Sobic003G264100--Sobic001G333100 Sobic009G109925 Sobic009G109925 Sobic003G264100--Sobic009G109925 Sobic006G196300 Sobic006G196300 Sobic003G264100--Sobic006G196300 Sobic002G311100 Sobic002G311100 Sobic003G264100--Sobic002G311100 Sobic003G264100--Sobic006G180000 Sobic009G068500 Sobic009G068500 Sobic003G264100--Sobic009G068500 Sobic001G227400 Sobic001G227400 Sobic003G264100--Sobic001G227400 Sobic001G192000 Sobic001G192000 Sobic003G264100--Sobic001G192000 Sobic003G195000 Sobic003G195000 Sobic003G264100--Sobic003G195000 Sobic008G055900 Sobic008G055900 Sobic010G223300--Sobic008G055900 Sobic001G449900 Sobic001G449900 Sobic010G223300--Sobic001G449900 Sobic002G020700 Sobic002G020700 Sobic010G223300--Sobic002G020700 Sobic003G338500 Sobic003G338500 Sobic010G223300--Sobic003G338500 Sobic006G260500 Sobic006G260500 Sobic010G223300--Sobic006G260500 Sobic010G223300--Sobic004G092500 Sobic010G223300--Sobic010G020400 Sobic002G008800 Sobic002G008800 Sobic010G223300--Sobic002G008800 Sobic010G223300--Sobic006G180000 Sobic009G092400--Sobic007G218000 Sobic005G160400 Sobic005G160400 Sobic009G092400--Sobic005G160400 Sobic009G092400--Sobic009G044800 Sobic009G249700 Sobic009G249700 Sobic009G092400--Sobic009G249700 Sobic007G125000 Sobic007G125000 Sobic009G092400--Sobic007G125000 Sobic004G209700 Sobic004G209700 Sobic009G092400--Sobic004G209700 Sobic009G092400--Sobic002G303600 Sobic009G092400--Sobic006G180000 Sobic007G132100 Sobic007G132100 Sobic009G092400--Sobic007G132100 Sobic001G007000--Sobic009G068500 Sobic010G251000 Sobic010G251000 Sobic001G007000--Sobic010G251000 Sobic001G392300 Sobic001G392300 Sobic001G007000--Sobic001G392300 Sobic002G359400 Sobic002G359400 Sobic001G007000--Sobic002G359400 Sobic004G353200 Sobic004G353200 Sobic001G007000--Sobic004G353200 Sobic010G205800 Sobic010G205800 Sobic001G007000--Sobic010G205800 Sobic008G046500 Sobic008G046500 Sobic001G007000--Sobic008G046500 Sobic001G080700 Sobic001G080700 Sobic001G007000--Sobic001G080700 Sobic001G007000--Sobic001G031100 Sobic010G020400--Sobic002G020700 Sobic001G049400 Sobic001G049400 Sobic010G020400--Sobic001G049400 Sobic010G020400--Sobic003G338500 Sobic010G020400--Sobic001G014800 Sobic010G020400--Sobic002G008800 Sobic010G020400--Sobic008G055900 Sobic008G033500 Sobic008G033500 Sobic010G020400--Sobic008G033500 Sobic010G020400--Sobic001G333100 Sobic010G020400--Sobic010G223300 Sobic004G092500--Sobic007G132100 Sobic001G493200 Sobic001G493200 Sobic004G092500--Sobic001G493200 Sobic004G092500--Sobic010G223300 Sobic003G143200 Sobic003G143200 Sobic004G092500--Sobic003G143200 Sobic004G092500--Sobic010G020400 Sobic004G257100 Sobic004G257100 Sobic004G092500--Sobic004G257100 Sobic004G039600 Sobic004G039600 Sobic004G092500--Sobic004G039600 Sobic006G077200 Sobic006G077200 Sobic004G092500--Sobic006G077200 Sobic004G092500--Sobic007G167900 Sobic004G028100--Sobic002G303600 Sobic004G028100--Sobic009G092400 Sobic004G028100--Sobic006G180000 Sobic004G028100--Sobic009G249700 Sobic004G028100--Sobic007G218000 Sobic003G173600 Sobic003G173600 Sobic004G028100--Sobic003G173600 Sobic010G243400 Sobic010G243400 Sobic004G028100--Sobic010G243400 Sobic004G028100--Sobic001G449900 Sobic004G028100--Sobic003G264100
Octagon: transcription factors


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