Gene annotation
Transcriptome id Sobic.001G413200.1
Synonym Sb01g038930
Functional annotation expressed protein
UniProt C5WP90
Pfam -
Panther DB PTHR33780 PTHR33780:SF3
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G53490 : -
RAP-DB (Rice) LOC_Os03g17440.1 : expressed protein
MaizeGDB (Corn) Zm00025a001908 , Zm00025a052717
Brachypodium -
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.001G413200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G180000 syntaxin-18, putative, expressed K08492: syntaxin 18
2 Sobic.009G257200 CK1_CaseinKinase_1.8 - CK1 includes the casein kinase 1 kinases, expressed K02218: CSNK1, casein kinase 1
3 Sobic.004G003401 - -
4 Sobic.003G332500 EAP30/Vps36 family domain containing protein, expressed K12190: VPS36, ESCRT-II complex subunit VPS36
5 Sobic.005G074500 VHS and GAT domain containing protein, expressed -
6 Sobic.009G092400 zinc finger, C3HC4 type family protein, expressed -
7 Sobic.010G020300 spastin, putative, expressed K13254: spastin
8 Sobic.001G431000 Sel1 repeat domain containing protein, putative, expressed K14026: SEL1, SEL1 protein
9 Sobic.009G174000 expressed protein -
10 Sobic.006G194500 expressed protein -
11 Sobic.007G132100 myrosinase precursor, putative, expressed -
12 Sobic.002G303600 -(PubMedID : 29147737)@RIN3, putative, expressed K10636: AMFR, autocrine motility factor receptor
13 Sobic.002G361300 eukaryotic aspartyl protease domain containing protein, expressed -
14 Sobic.001G085100 expressed protein -
15 Sobic.003G312200 signal recognition particle 54 kDa protein, putative, expressed K03106: SRP54, signal recognition particle subunit SRP54
16 Sobic.006G126100 serine/threonine protein phosphatase 2A 59 kDa regulatory subunit Bgamma isoform, putative, expressed K11584: serine/threonine-protein phosphatase 2A regulatory subunit B'
17 Sobic.009G219000 ANTH/ENTH domain containing protein, putative, expressed -
18 Sobic.004G178200 ligatin, putative, expressed K15027: translation initiation factor 2D
19 Sobic.004G028100 expressed protein -
20 Sobic.007G203300 CDK-activating kinase assembly factor MAT1 family protein, expressed K10842: CDK-activating kinase assembly factor MAT1


Gene co-expression network
sample Sobic001G413200 Sobic001G413200 Sobic006G180000 Sobic006G180000 Sobic001G413200--Sobic006G180000 Sobic009G257200 Sobic009G257200 Sobic001G413200--Sobic009G257200 Sobic004G003401 Sobic004G003401 Sobic001G413200--Sobic004G003401 Sobic003G332500 Sobic003G332500 Sobic001G413200--Sobic003G332500 Sobic005G074500 Sobic005G074500 Sobic001G413200--Sobic005G074500 Sobic009G092400 Sobic009G092400 Sobic001G413200--Sobic009G092400 Sobic010G020300 Sobic010G020300 Sobic001G413200--Sobic010G020300 Sobic001G431000 Sobic001G431000 Sobic001G413200--Sobic001G431000 Sobic009G174000 Sobic009G174000 Sobic001G413200--Sobic009G174000 Sobic002G303600 Sobic002G303600 Sobic006G180000--Sobic002G303600 Sobic002G047700 Sobic002G047700 Sobic006G180000--Sobic002G047700 Sobic003G264100 Sobic003G264100 Sobic006G180000--Sobic003G264100 Sobic010G223300 Sobic010G223300 Sobic006G180000--Sobic010G223300 Sobic006G180000--Sobic009G092400 Sobic001G007000 Sobic001G007000 Sobic006G180000--Sobic001G007000 Sobic010G020400 Sobic010G020400 Sobic006G180000--Sobic010G020400 Sobic004G092500 Sobic004G092500 Sobic006G180000--Sobic004G092500 Sobic004G028100 Sobic004G028100 Sobic006G180000--Sobic004G028100 Sobic003G187200 Sobic003G187200 Sobic009G257200--Sobic003G187200 Sobic009G228700 Sobic009G228700 Sobic009G257200--Sobic009G228700 Sobic004G039600 Sobic004G039600 Sobic009G257200--Sobic004G039600 Sobic002G361300 Sobic002G361300 Sobic009G257200--Sobic002G361300 Sobic007G132100 Sobic007G132100 Sobic009G257200--Sobic007G132100 Sobic010G261600 Sobic010G261600 Sobic009G257200--Sobic010G261600 Sobic002G378200 Sobic002G378200 Sobic009G257200--Sobic002G378200 Sobic009G257200--Sobic002G303600 Sobic001G127000 Sobic001G127000 Sobic009G257200--Sobic001G127000 Sobic004G003401--Sobic009G228700 Sobic004G003401--Sobic002G303600 Sobic001G091300 Sobic001G091300 Sobic004G003401--Sobic001G091300 Sobic010G243400 Sobic010G243400 Sobic004G003401--Sobic010G243400 Sobic004G003401--Sobic006G180000 Sobic003G312200 Sobic003G312200 Sobic004G003401--Sobic003G312200 Sobic001G114000 Sobic001G114000 Sobic004G003401--Sobic001G114000 Sobic009G041700 Sobic009G041700 Sobic004G003401--Sobic009G041700 Sobic006G200600 Sobic006G200600 Sobic004G003401--Sobic006G200600 Sobic003G337300 Sobic003G337300 Sobic003G332500--Sobic003G337300 Sobic004G277200 Sobic004G277200 Sobic003G332500--Sobic004G277200 Sobic003G104000 Sobic003G104000 Sobic003G332500--Sobic003G104000 Sobic006G126100 Sobic006G126100 Sobic003G332500--Sobic006G126100 Sobic001G362200 Sobic001G362200 Sobic003G332500--Sobic001G362200 Sobic003G332500--Sobic007G132100 Sobic004G072100 Sobic004G072100 Sobic003G332500--Sobic004G072100 Sobic001G096000 Sobic001G096000 Sobic003G332500--Sobic001G096000 Sobic010G004100 Sobic010G004100 Sobic003G332500--Sobic010G004100 Sobic008G103300 Sobic008G103300 Sobic005G074500--Sobic008G103300 Sobic005G074500--Sobic003G312200 Sobic001G206900 Sobic001G206900 Sobic005G074500--Sobic001G206900 Sobic001G449900 Sobic001G449900 Sobic005G074500--Sobic001G449900 Sobic005G074500--Sobic003G337300 Sobic001G426100 Sobic001G426100 Sobic005G074500--Sobic001G426100 Sobic004G323700 Sobic004G323700 Sobic005G074500--Sobic004G323700 Sobic005G074500--Sobic001G431000 Sobic005G074500--Sobic010G020300 Sobic007G218000 Sobic007G218000 Sobic009G092400--Sobic007G218000 Sobic005G160400 Sobic005G160400 Sobic009G092400--Sobic005G160400 Sobic009G044800 Sobic009G044800 Sobic009G092400--Sobic009G044800 Sobic009G249700 Sobic009G249700 Sobic009G092400--Sobic009G249700 Sobic007G125000 Sobic007G125000 Sobic009G092400--Sobic007G125000 Sobic004G209700 Sobic004G209700 Sobic009G092400--Sobic004G209700 Sobic009G092400--Sobic002G303600 Sobic009G092400--Sobic006G180000 Sobic009G092400--Sobic007G132100 Sobic001G124200 Sobic001G124200 Sobic010G020300--Sobic001G124200 Sobic010G205800 Sobic010G205800 Sobic010G020300--Sobic010G205800 Sobic004G065000 Sobic004G065000 Sobic010G020300--Sobic004G065000 Sobic001G390800 Sobic001G390800 Sobic010G020300--Sobic001G390800 Sobic003G352200 Sobic003G352200 Sobic010G020300--Sobic003G352200 Sobic004G177300 Sobic004G177300 Sobic010G020300--Sobic004G177300 Sobic010G278200 Sobic010G278200 Sobic010G020300--Sobic010G278200 Sobic001G227400 Sobic001G227400 Sobic010G020300--Sobic001G227400 Sobic001G121200 Sobic001G121200 Sobic010G020300--Sobic001G121200 Sobic001G431000--Sobic006G126100 Sobic006G073200 Sobic006G073200 Sobic001G431000--Sobic006G073200 Sobic001G431000--Sobic001G227400 Sobic006G077200 Sobic006G077200 Sobic001G431000--Sobic006G077200 Sobic001G404600 Sobic001G404600 Sobic001G431000--Sobic001G404600 Sobic004G257100 Sobic004G257100 Sobic001G431000--Sobic004G257100 Sobic008G157200 Sobic008G157200 Sobic001G431000--Sobic008G157200 Sobic004G241900 Sobic004G241900 Sobic001G431000--Sobic004G241900 Sobic001G431000--Sobic001G449900 Sobic009G174000--Sobic001G431000 Sobic005G155800 Sobic005G155800 Sobic009G174000--Sobic005G155800 Sobic009G174000--Sobic001G413200 Sobic007G203300 Sobic007G203300 Sobic009G174000--Sobic007G203300 Sobic003G102600 Sobic003G102600 Sobic009G174000--Sobic003G102600 Sobic010G230600 Sobic010G230600 Sobic009G174000--Sobic010G230600 Sobic004G253900 Sobic004G253900 Sobic009G174000--Sobic004G253900 Sobic006G087400 Sobic006G087400 Sobic009G174000--Sobic006G087400 Sobic004G227300 Sobic004G227300 Sobic009G174000--Sobic004G227300
Octagon: transcription factors


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