Gene annotation
Transcriptome id Sobic.001G431000.1
Synonym Sb01g040530
Functional annotation Sel1 repeat domain containing protein, putative, expressed
UniProt C5WQS5
Pfam PF08238
Panther DB PTHR11102 PTHR11102:SF84
NCBI CDD KOG1550; Extracellular protein SEL-1 and related proteins
KEGG Orthology K14026; SEL1, SEL1 protein
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G18260 : HCP-like superfamily protein
RAP-DB (Rice) LOC_Os03g15350.1 : Sel1 repeat domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a052829 , Zm00025a001677
Brachypodium KQK22493
Barley HORVU4Hr1G062000.2 , HORVU4Hr1G062000.3 , HORVU4Hr1G062000.1
Wheat TraesCS4D02G218800 , TraesCS4B02G218500 , TraesCS4A02G085700
Populus -


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cDNA sequences
Sobic.001G431000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G126100 serine/threonine protein phosphatase 2A 59 kDa regulatory subunit Bgamma isoform, putative, expressed K11584: serine/threonine-protein phosphatase 2A regulatory subunit B'
2 Sobic.006G073200 OTU-like cysteine protease family protein, putative, expressed K12655: OTUD5, OTU domain-containing protein 5
3 Sobic.001G227400 WD domain, G-beta repeat domain containing protein, expressed -
4 Sobic.006G077200 ubiquitin interaction motif-containing protein, putative, expressed -
5 Sobic.001G404600 expressed protein K18270: Rab3 GTPase-activating protein catalytic subunit
6 Sobic.004G257100 transmembrane 9 superfamily member, putative, expressed -
7 Sobic.008G157200 inorganic H+ pyrophosphatase, putative, expressed K01507: inorganic pyrophosphatase
8 Sobic.004G241900 OsDegp3 - Putative Deg protease homologue, expressed -
9 Sobic.001G449900 conserved oligomeric complex COG6 family protein, expressed -
10 Sobic.003G249600 vacuolar protein sorting-associated protein 16, putative, expressed -
11 Sobic.001G493200 endonuclease/exonuclease/phosphatase family domain containing protein, expressed K12603: CNOT6, CCR4-NOT transcription complex subunit 6
12 Sobic.005G074500 VHS and GAT domain containing protein, expressed -
13 Sobic.008G004600 ubiquitin-activating enzyme, putative, expressed K03178: UBE1, ubiquitin-activating enzyme E1
14 Sobic.006G280000 transportin-2, putative, expressed K18752: TNPO1, IPO2, transportin-1
15 Sobic.001G276200 ACI13, putative, expressed -
16 Sobic.010G078900 transcription elongation factor SPT5 homolog 1, putative, expressed K15172: SUPT5H, transcription elongation factor SPT5
17 Sobic.010G230600 DnaK family protein, putative, expressed K09489: heat shock 70kDa protein 4
18 Sobic.008G185500 zinc finger, putative, expressed -
19 Sobic.003G332500 EAP30/Vps36 family domain containing protein, expressed K12190: VPS36, ESCRT-II complex subunit VPS36
20 Sobic.009G174000 expressed protein -


Gene co-expression network
sample Sobic001G431000 Sobic001G431000 Sobic006G126100 Sobic006G126100 Sobic001G431000--Sobic006G126100 Sobic006G073200 Sobic006G073200 Sobic001G431000--Sobic006G073200 Sobic001G227400 Sobic001G227400 Sobic001G431000--Sobic001G227400 Sobic006G077200 Sobic006G077200 Sobic001G431000--Sobic006G077200 Sobic001G404600 Sobic001G404600 Sobic001G431000--Sobic001G404600 Sobic004G257100 Sobic004G257100 Sobic001G431000--Sobic004G257100 Sobic008G157200 Sobic008G157200 Sobic001G431000--Sobic008G157200 Sobic004G241900 Sobic004G241900 Sobic001G431000--Sobic004G241900 Sobic001G449900 Sobic001G449900 Sobic001G431000--Sobic001G449900 Sobic004G004300 Sobic004G004300 Sobic006G126100--Sobic004G004300 Sobic008G004600 Sobic008G004600 Sobic006G126100--Sobic008G004600 Sobic004G039600 Sobic004G039600 Sobic006G126100--Sobic004G039600 Sobic001G534800 Sobic001G534800 Sobic006G126100--Sobic001G534800 Sobic003G104000 Sobic003G104000 Sobic006G126100--Sobic003G104000 Sobic006G012500 Sobic006G012500 Sobic006G126100--Sobic006G012500 Sobic004G135400 Sobic004G135400 Sobic006G126100--Sobic004G135400 Sobic007G132100 Sobic007G132100 Sobic006G126100--Sobic007G132100 Sobic006G208500 Sobic006G208500 Sobic006G126100--Sobic006G208500 Sobic006G073200--Sobic008G157200 Sobic006G073200--Sobic004G257100 Sobic006G073200--Sobic001G431000 Sobic001G537500 Sobic001G537500 Sobic006G073200--Sobic001G537500 Sobic001G493200 Sobic001G493200 Sobic006G073200--Sobic001G493200 Sobic008G135200 Sobic008G135200 Sobic006G073200--Sobic008G135200 Sobic006G036100 Sobic006G036100 Sobic006G073200--Sobic006G036100 Sobic004G131300 Sobic004G131300 Sobic006G073200--Sobic004G131300 Sobic001G251100 Sobic001G251100 Sobic006G073200--Sobic001G251100 Sobic009G044800 Sobic009G044800 Sobic001G227400--Sobic009G044800 Sobic007G218000 Sobic007G218000 Sobic001G227400--Sobic007G218000 Sobic001G227400--Sobic001G493200 Sobic001G493700 Sobic001G493700 Sobic001G227400--Sobic001G493700 Sobic006G088200 Sobic006G088200 Sobic001G227400--Sobic006G088200 Sobic009G084900 Sobic009G084900 Sobic001G227400--Sobic009G084900 Sobic003G195000 Sobic003G195000 Sobic001G227400--Sobic003G195000 Sobic005G172500 Sobic005G172500 Sobic001G227400--Sobic005G172500 Sobic001G289800 Sobic001G289800 Sobic001G227400--Sobic001G289800 Sobic006G077200--Sobic009G084900 Sobic010G185400 Sobic010G185400 Sobic006G077200--Sobic010G185400 Sobic010G059500 Sobic010G059500 Sobic006G077200--Sobic010G059500 Sobic001G145400 Sobic001G145400 Sobic006G077200--Sobic001G145400 Sobic006G077200--Sobic001G493200 Sobic003G249600 Sobic003G249600 Sobic006G077200--Sobic003G249600 Sobic008G082500 Sobic008G082500 Sobic006G077200--Sobic008G082500 Sobic003G189600 Sobic003G189600 Sobic006G077200--Sobic003G189600 Sobic004G096400 Sobic004G096400 Sobic006G077200--Sobic004G096400 Sobic008G124800 Sobic008G124800 Sobic001G404600--Sobic008G124800 Sobic003G233400 Sobic003G233400 Sobic001G404600--Sobic003G233400 Sobic002G308500 Sobic002G308500 Sobic001G404600--Sobic002G308500 Sobic001G287500 Sobic001G287500 Sobic001G404600--Sobic001G287500 Sobic002G020700 Sobic002G020700 Sobic001G404600--Sobic002G020700 Sobic001G404600--Sobic009G084900 Sobic004G322400 Sobic004G322400 Sobic001G404600--Sobic004G322400 Sobic006G021700 Sobic006G021700 Sobic001G404600--Sobic006G021700 Sobic001G301200 Sobic001G301200 Sobic001G404600--Sobic001G301200 Sobic004G257100--Sobic004G131300 Sobic004G257100--Sobic001G251100 Sobic004G092500 Sobic004G092500 Sobic004G257100--Sobic004G092500 Sobic004G257100--Sobic006G073200 Sobic004G257100--Sobic005G172500 Sobic004G257100--Sobic008G004600 Sobic004G257100--Sobic001G227400 Sobic008G112800 Sobic008G112800 Sobic004G257100--Sobic008G112800 Sobic001G392300 Sobic001G392300 Sobic004G257100--Sobic001G392300 Sobic008G157200--Sobic006G073200 Sobic006G127600 Sobic006G127600 Sobic008G157200--Sobic006G127600 Sobic008G157200--Sobic004G131300 Sobic008G157200--Sobic009G084900 Sobic003G314700 Sobic003G314700 Sobic008G157200--Sobic003G314700 Sobic007G162100 Sobic007G162100 Sobic008G157200--Sobic007G162100 Sobic003G405500 Sobic003G405500 Sobic008G157200--Sobic003G405500 Sobic001G248100 Sobic001G248100 Sobic008G157200--Sobic001G248100 Sobic008G157200--Sobic001G404600 Sobic007G005500 Sobic007G005500 Sobic004G241900--Sobic007G005500 Sobic006G260500 Sobic006G260500 Sobic004G241900--Sobic006G260500 Sobic003G209200 Sobic003G209200 Sobic004G241900--Sobic003G209200 Sobic005G062200 Sobic005G062200 Sobic004G241900--Sobic005G062200 Sobic003G114400 Sobic003G114400 Sobic004G241900--Sobic003G114400 Sobic006G196300 Sobic006G196300 Sobic004G241900--Sobic006G196300 Sobic006G277000 Sobic006G277000 Sobic004G241900--Sobic006G277000 Sobic001G263600 Sobic001G263600 Sobic004G241900--Sobic001G263600 Sobic004G261600 Sobic004G261600 Sobic004G241900--Sobic004G261600 Sobic010G223300 Sobic010G223300 Sobic001G449900--Sobic010G223300 Sobic001G449900--Sobic002G020700 Sobic008G085700 Sobic008G085700 Sobic001G449900--Sobic008G085700 Sobic001G449900--Sobic001G301200 Sobic001G449900--Sobic003G189600 Sobic001G428800 Sobic001G428800 Sobic001G449900--Sobic001G428800 Sobic003G029600 Sobic003G029600 Sobic001G449900--Sobic003G029600 Sobic010G020400 Sobic010G020400 Sobic001G449900--Sobic010G020400 Sobic001G449900--Sobic007G005500
Octagon: transcription factors


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