Gene annotation
Transcriptome id Sobic.008G185500.1,Sobic.008G185500.2
Synonym Sb08g022690
Functional annotation zinc finger, putative, expressed
UniProt C5YSW8
Pfam PF01485
Panther DB PTHR11685 PTHR11685:SF132
NCBI CDD KOG1812; Predicted E3 ubiquitin ligase
KEGG Orthology -
Gene Ontology GO:0016567; protein ubiquitination GO:0004842ubiquitin-protein transferase activity


Orthologs (automatic annotation)
TAIR AT4G19670 : RING/U-box superfamily protein
RAP-DB (Rice) LOC_Os12g43560.1 : zinc finger, putative, expressed
MaizeGDB (Corn) Zm00025a004831
Brachypodium KQJ85681 , KQJ85680
Barley -
Wheat TraesCS5D02G022000 , TraesCS5B02G014200 , TraesCS5A02G015900
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G295500 expressed protein -
2 Sobic.007G180600 UBX domain-containing protein, putative, expressed -
3 Sobic.001G431000 Sel1 repeat domain containing protein, putative, expressed K14026: SEL1, SEL1 protein
4 Sobic.008G053600 alpha-1,4-fucosyltransferase, putative, expressed K14412: FUT13, alpha-1,4-fucosyltransferase
5 Sobic.001G273700 tRNA-splicing endonuclease positive effector-related, putative, expressed K10706: SETX, senataxin
6 Sobic.007G132100 myrosinase precursor, putative, expressed -
7 Sobic.002G303600 -(PubMedID : 29147737)@RIN3, putative, expressed K10636: AMFR, autocrine motility factor receptor
8 Sobic.007G218000 chloride transporter, chloride channel family, putative, expressed -
9 Sobic.004G323700 zinc finger family protein, putative, expressed -
10 Sobic.006G131000 expressed protein K11968: ariadne-1
11 Sobic.005G074500 VHS and GAT domain containing protein, expressed -
12 Sobic.006G174850 - K15193: SPTY2D1, protein SPT2
13 Sobic.002G262700 RNA recognition motif containing protein, putative, expressed K13155: U11/U12 small nuclear ribonucleoprotein 35 kDa protein
14 Sobic.001G005600 CBS domain containing membrane protein, putative, expressed -
15 Sobic.004G072100 centromere/kinetochore protein zw10, putative, expressed K11578: ZW10, protein transport protein DSL1/ZW10
16 Sobic.006G073200 OTU-like cysteine protease family protein, putative, expressed K12655: OTUD5, OTU domain-containing protein 5
17 Sobic.001G227400 WD domain, G-beta repeat domain containing protein, expressed -
18 Sobic.003G332500 EAP30/Vps36 family domain containing protein, expressed K12190: VPS36, ESCRT-II complex subunit VPS36
19 Sobic.007G119200 intracellular protein transport protein USO1-related, putative, expressed -
20 Sobic.004G068500 CUE domain containing protein, expressed -


Gene co-expression network
sample Sobic008G185500 Sobic008G185500 Sobic002G295500 Sobic002G295500 Sobic008G185500--Sobic002G295500 Sobic007G180600 Sobic007G180600 Sobic008G185500--Sobic007G180600 Sobic001G431000 Sobic001G431000 Sobic008G185500--Sobic001G431000 Sobic008G053600 Sobic008G053600 Sobic008G185500--Sobic008G053600 Sobic001G273700 Sobic001G273700 Sobic008G185500--Sobic001G273700 Sobic007G132100 Sobic007G132100 Sobic008G185500--Sobic007G132100 Sobic002G303600 Sobic002G303600 Sobic008G185500--Sobic002G303600 Sobic007G218000 Sobic007G218000 Sobic008G185500--Sobic007G218000 Sobic004G323700 Sobic004G323700 Sobic008G185500--Sobic004G323700 Sobic003G104000 Sobic003G104000 Sobic002G295500--Sobic003G104000 Sobic009G044800 Sobic009G044800 Sobic002G295500--Sobic009G044800 Sobic003G416700 Sobic003G416700 Sobic002G295500--Sobic003G416700 Sobic006G224800 Sobic006G224800 Sobic002G295500--Sobic006G224800 Sobic004G353000 Sobic004G353000 Sobic002G295500--Sobic004G353000 Sobic007G183900 Sobic007G183900 Sobic002G295500--Sobic007G183900 Sobic006G240100 Sobic006G240100 Sobic002G295500--Sobic006G240100 Sobic002G295500--Sobic007G132100 Sobic006G200700 Sobic006G200700 Sobic002G295500--Sobic006G200700 Sobic001G251200 Sobic001G251200 Sobic007G180600--Sobic001G251200 Sobic004G228800 Sobic004G228800 Sobic007G180600--Sobic004G228800 Sobic006G131000 Sobic006G131000 Sobic007G180600--Sobic006G131000 Sobic007G180600--Sobic008G185500 Sobic001G477700 Sobic001G477700 Sobic007G180600--Sobic001G477700 Sobic001G522100 Sobic001G522100 Sobic007G180600--Sobic001G522100 Sobic004G261600 Sobic004G261600 Sobic007G180600--Sobic004G261600 Sobic007G042900 Sobic007G042900 Sobic007G180600--Sobic007G042900 Sobic004G257200 Sobic004G257200 Sobic007G180600--Sobic004G257200 Sobic006G126100 Sobic006G126100 Sobic001G431000--Sobic006G126100 Sobic006G073200 Sobic006G073200 Sobic001G431000--Sobic006G073200 Sobic001G227400 Sobic001G227400 Sobic001G431000--Sobic001G227400 Sobic006G077200 Sobic006G077200 Sobic001G431000--Sobic006G077200 Sobic001G404600 Sobic001G404600 Sobic001G431000--Sobic001G404600 Sobic004G257100 Sobic004G257100 Sobic001G431000--Sobic004G257100 Sobic008G157200 Sobic008G157200 Sobic001G431000--Sobic008G157200 Sobic004G241900 Sobic004G241900 Sobic001G431000--Sobic004G241900 Sobic001G449900 Sobic001G449900 Sobic001G431000--Sobic001G449900 Sobic008G053600--Sobic008G185500 Sobic003G436300 Sobic003G436300 Sobic008G053600--Sobic003G436300 Sobic004G091200 Sobic004G091200 Sobic008G053600--Sobic004G091200 Sobic001G005600 Sobic001G005600 Sobic008G053600--Sobic001G005600 Sobic002G348600 Sobic002G348600 Sobic008G053600--Sobic002G348600 Sobic001G534600 Sobic001G534600 Sobic008G053600--Sobic001G534600 Sobic010G176500 Sobic010G176500 Sobic008G053600--Sobic010G176500 Sobic005G074500 Sobic005G074500 Sobic008G053600--Sobic005G074500 Sobic004G068500 Sobic004G068500 Sobic008G053600--Sobic004G068500 Sobic007G172200 Sobic007G172200 Sobic001G273700--Sobic007G172200 Sobic001G263600 Sobic001G263600 Sobic001G273700--Sobic001G263600 Sobic008G099800 Sobic008G099800 Sobic001G273700--Sobic008G099800 Sobic001G347500 Sobic001G347500 Sobic001G273700--Sobic001G347500 Sobic007G133700 Sobic007G133700 Sobic001G273700--Sobic007G133700 Sobic007G163100 Sobic007G163100 Sobic001G273700--Sobic007G163100 Sobic001G457900 Sobic001G457900 Sobic001G273700--Sobic001G457900 Sobic001G313700 Sobic001G313700 Sobic001G273700--Sobic001G313700 Sobic002G042600 Sobic002G042600 Sobic001G273700--Sobic002G042600 Sobic007G132100--Sobic007G218000 Sobic004G072100 Sobic004G072100 Sobic007G132100--Sobic004G072100 Sobic004G039600 Sobic004G039600 Sobic007G132100--Sobic004G039600 Sobic004G178200 Sobic004G178200 Sobic007G132100--Sobic004G178200 Sobic007G132100--Sobic006G131000 Sobic006G012500 Sobic006G012500 Sobic007G132100--Sobic006G012500 Sobic007G132100--Sobic009G044800 Sobic007G132100--Sobic008G099800 Sobic010G204400 Sobic010G204400 Sobic007G132100--Sobic010G204400 Sobic010G261600 Sobic010G261600 Sobic002G303600--Sobic010G261600 Sobic002G303600--Sobic004G323700 Sobic002G303600--Sobic004G178200 Sobic006G180000 Sobic006G180000 Sobic002G303600--Sobic006G180000 Sobic002G303600--Sobic007G218000 Sobic004G028100 Sobic004G028100 Sobic002G303600--Sobic004G028100 Sobic003G422900 Sobic003G422900 Sobic002G303600--Sobic003G422900 Sobic009G092400 Sobic009G092400 Sobic002G303600--Sobic009G092400 Sobic004G003401 Sobic004G003401 Sobic002G303600--Sobic004G003401 Sobic007G218000--Sobic007G132100 Sobic007G218000--Sobic004G072100 Sobic002G112700 Sobic002G112700 Sobic007G218000--Sobic002G112700 Sobic007G218000--Sobic006G131000 Sobic007G218000--Sobic009G044800 Sobic007G218000--Sobic010G204400 Sobic007G218000--Sobic006G012500 Sobic009G249700 Sobic009G249700 Sobic007G218000--Sobic009G249700 Sobic007G218000--Sobic009G092400 Sobic002G117400 Sobic002G117400 Sobic004G323700--Sobic002G117400 Sobic004G323700--Sobic007G218000 Sobic004G323700--Sobic002G303600 Sobic004G323700--Sobic010G261600 Sobic004G323700--Sobic004G228800 Sobic010G278200 Sobic010G278200 Sobic004G323700--Sobic010G278200 Sobic006G174850 Sobic006G174850 Sobic004G323700--Sobic006G174850 Sobic004G323700--Sobic006G131000 Sobic004G323700--Sobic004G039600
Octagon: transcription factors


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