Gene annotation
Transcriptome id Sobic.003G332500.1
Synonym Sb03g037770
Functional annotation EAP30/Vps36 family domain containing protein, expressed
UniProt A0A1B6Q6P2
Pfam PF04157
Panther DB PTHR13128 PTHR13128:SF12
NCBI CDD KOG2760; Vacuolar sorting protein VPS36
KEGG Orthology K12190; VPS36, ESCRT-II complex subunit VPS36
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G04920 : EAP30/Vps36 family protein
RAP-DB (Rice) LOC_Os01g59800.1 : EAP30/Vps36 family domain containing protein, expressed
MaizeGDB (Corn) Zm00025a039410 , Zm00025a027122 , Zm00025a039803
Brachypodium KQK10270
Barley HORVU3Hr1G079710.6 , HORVU3Hr1G079710.9 , HORVU3Hr1G079710.8 , HORVU3Hr1G079710.1 , HORVU3Hr1G079710.3 , HORVU3Hr1G079710.2 , HORVU3Hr1G079710.5 , HORVU3Hr1G079710.4 , HORVU3Hr1G079710.7 , HORVU3Hr1G079710.11 , HORVU3Hr1G079710.10 , HORVU3Hr1G079710.12
Wheat TraesCS3A02G337500 , TraesCS3A02G337500 , TraesCS3B02G368700 , TraesCS3D02G330600 , TraesCS3D02G330600 , TraesCS3B02G368700
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G337300 HEAT repeat family protein, putative, expressed K08876: SCY1-like protein 1
2 Sobic.004G277200 GPI transamidase subunit PIG-U domain containing protein, expressed K05293: GPI-anchor transamidase subunit U
3 Sobic.003G104000 expressed protein K15133: mediator of RNA polymerase II transcription subunit 17
4 Sobic.006G126100 serine/threonine protein phosphatase 2A 59 kDa regulatory subunit Bgamma isoform, putative, expressed K11584: serine/threonine-protein phosphatase 2A regulatory subunit B'
5 Sobic.001G362200 DHHC zinc finger domain containing protein, expressed K18932: palmitoyltransferase
6 Sobic.007G132100 myrosinase precursor, putative, expressed -
7 Sobic.004G072100 centromere/kinetochore protein zw10, putative, expressed K11578: ZW10, protein transport protein DSL1/ZW10
8 Sobic.001G096000 CWF19-like 2, cell cycle control, putative, expressed -
9 Sobic.010G004100 expressed protein -
10 Sobic.004G092500 OsPP2Ac-1 - Phosphatase 2A isoform 1 belonging to family 1, expressed K04382: serine/threonine-protein phosphatase 2A catalytic subunit
11 Sobic.007G225100 ZOS8-09 - C2H2 zinc finger protein, expressed -
12 Sobic.002G366400 histone deacetylase, putative, expressed K11407: histone deacetylase 6
13 Sobic.001G124200 ethylene receptor, putative, expressed K14509: ETR, ethylene receptor
14 Sobic.006G012500 protein transport protein Sec24-like, putative, expressed K14007: protein transport protein SEC24
15 Sobic.010G118950 - -
16 Sobic.001G493200 endonuclease/exonuclease/phosphatase family domain containing protein, expressed K12603: CNOT6, CCR4-NOT transcription complex subunit 6
17 Sobic.007G183900 ubiquitin family protein, putative, expressed -
18 Sobic.002G137400 protein binding protein, putative, expressed -
19 Sobic.002G295500 expressed protein -
20 Sobic.001G441400 transcription factor, putative, expressed K09060: plant G-box-binding factor


Gene co-expression network
sample Sobic003G332500 Sobic003G332500 Sobic003G337300 Sobic003G337300 Sobic003G332500--Sobic003G337300 Sobic004G277200 Sobic004G277200 Sobic003G332500--Sobic004G277200 Sobic003G104000 Sobic003G104000 Sobic003G332500--Sobic003G104000 Sobic006G126100 Sobic006G126100 Sobic003G332500--Sobic006G126100 Sobic001G362200 Sobic001G362200 Sobic003G332500--Sobic001G362200 Sobic007G132100 Sobic007G132100 Sobic003G332500--Sobic007G132100 Sobic004G072100 Sobic004G072100 Sobic003G332500--Sobic004G072100 Sobic001G096000 Sobic001G096000 Sobic003G332500--Sobic001G096000 Sobic010G004100 Sobic010G004100 Sobic003G332500--Sobic010G004100 Sobic003G337300--Sobic003G104000 Sobic003G337300--Sobic010G004100 Sobic002G137400 Sobic002G137400 Sobic003G337300--Sobic002G137400 Sobic004G039600 Sobic004G039600 Sobic003G337300--Sobic004G039600 Sobic006G131000 Sobic006G131000 Sobic003G337300--Sobic006G131000 Sobic004G344901 Sobic004G344901 Sobic003G337300--Sobic004G344901 Sobic004G322400 Sobic004G322400 Sobic003G337300--Sobic004G322400 Sobic003G337300--Sobic003G332500 Sobic001G415300 Sobic001G415300 Sobic003G337300--Sobic001G415300 Sobic004G135400 Sobic004G135400 Sobic004G277200--Sobic004G135400 Sobic008G099800 Sobic008G099800 Sobic004G277200--Sobic008G099800 Sobic010G118950 Sobic010G118950 Sobic004G277200--Sobic010G118950 Sobic007G225100 Sobic007G225100 Sobic004G277200--Sobic007G225100 Sobic004G277200--Sobic003G104000 Sobic006G208500 Sobic006G208500 Sobic004G277200--Sobic006G208500 Sobic004G277200--Sobic003G332500 Sobic006G200700 Sobic006G200700 Sobic004G277200--Sobic006G200700 Sobic009G201700 Sobic009G201700 Sobic004G277200--Sobic009G201700 Sobic003G104000--Sobic003G337300 Sobic002G256700 Sobic002G256700 Sobic003G104000--Sobic002G256700 Sobic003G104000--Sobic006G126100 Sobic001G251100 Sobic001G251100 Sobic003G104000--Sobic001G251100 Sobic002G142900 Sobic002G142900 Sobic003G104000--Sobic002G142900 Sobic002G295500 Sobic002G295500 Sobic003G104000--Sobic002G295500 Sobic003G104000--Sobic004G277200 Sobic004G131300 Sobic004G131300 Sobic003G104000--Sobic004G131300 Sobic006G261400 Sobic006G261400 Sobic003G104000--Sobic006G261400 Sobic004G004300 Sobic004G004300 Sobic006G126100--Sobic004G004300 Sobic008G004600 Sobic008G004600 Sobic006G126100--Sobic008G004600 Sobic006G126100--Sobic004G039600 Sobic001G534800 Sobic001G534800 Sobic006G126100--Sobic001G534800 Sobic006G126100--Sobic003G104000 Sobic006G012500 Sobic006G012500 Sobic006G126100--Sobic006G012500 Sobic006G126100--Sobic004G135400 Sobic006G126100--Sobic007G132100 Sobic006G126100--Sobic006G208500 Sobic001G362200--Sobic003G332500 Sobic003G109700 Sobic003G109700 Sobic001G362200--Sobic003G109700 Sobic006G032900 Sobic006G032900 Sobic001G362200--Sobic006G032900 Sobic001G102700 Sobic001G102700 Sobic001G362200--Sobic001G102700 Sobic001G515000 Sobic001G515000 Sobic001G362200--Sobic001G515000 Sobic004G192200 Sobic004G192200 Sobic001G362200--Sobic004G192200 Sobic001G362200--Sobic004G072100 Sobic002G134600 Sobic002G134600 Sobic001G362200--Sobic002G134600 Sobic007G183900 Sobic007G183900 Sobic001G362200--Sobic007G183900 Sobic007G218000 Sobic007G218000 Sobic007G132100--Sobic007G218000 Sobic007G132100--Sobic004G072100 Sobic007G132100--Sobic004G039600 Sobic004G178200 Sobic004G178200 Sobic007G132100--Sobic004G178200 Sobic007G132100--Sobic006G131000 Sobic007G132100--Sobic006G012500 Sobic009G044800 Sobic009G044800 Sobic007G132100--Sobic009G044800 Sobic007G132100--Sobic008G099800 Sobic010G204400 Sobic010G204400 Sobic007G132100--Sobic010G204400 Sobic004G072100--Sobic007G218000 Sobic010G053800 Sobic010G053800 Sobic004G072100--Sobic010G053800 Sobic010G275500 Sobic010G275500 Sobic004G072100--Sobic010G275500 Sobic004G072100--Sobic007G132100 Sobic004G072100--Sobic006G012500 Sobic010G069100 Sobic010G069100 Sobic004G072100--Sobic010G069100 Sobic010G116600 Sobic010G116600 Sobic004G072100--Sobic010G116600 Sobic008G047800 Sobic008G047800 Sobic004G072100--Sobic008G047800 Sobic001G155000 Sobic001G155000 Sobic004G072100--Sobic001G155000 Sobic001G096000--Sobic006G131000 Sobic008G124900 Sobic008G124900 Sobic001G096000--Sobic008G124900 Sobic001G096000--Sobic006G126100 Sobic001G096000--Sobic003G332500 Sobic001G096000--Sobic003G104000 Sobic001G096000--Sobic003G337300 Sobic001G477700 Sobic001G477700 Sobic001G096000--Sobic001G477700 Sobic001G163400 Sobic001G163400 Sobic001G096000--Sobic001G163400 Sobic001G096000--Sobic001G362200 Sobic007G163100 Sobic007G163100 Sobic010G004100--Sobic007G163100 Sobic001G117200 Sobic001G117200 Sobic010G004100--Sobic001G117200 Sobic010G004100--Sobic002G137400 Sobic010G004100--Sobic003G337300 Sobic010G004100--Sobic003G104000 Sobic004G113400 Sobic004G113400 Sobic010G004100--Sobic004G113400 Sobic003G408600 Sobic003G408600 Sobic010G004100--Sobic003G408600 Sobic010G004100--Sobic004G004300 Sobic010G004100--Sobic001G415300
Octagon: transcription factors


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