Gene annotation
Transcriptome id Sobic.007G225100.1
Synonym ATMBD8, MBD8, Sb07g029020
Functional annotation ZOS8-09 - C2H2 zinc finger protein, expressed
UniProt C5YJP9
Pfam PF01429
Panther DB PTHR15065 PTHR15065:SF4
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005634; nucleus GO:0003677DNA binding


Orthologs (automatic annotation)
TAIR AT1G22310 : methyl-CPG-binding domain 8
RAP-DB (Rice) LOC_Os08g37920.1 : ZOS8-09 - C2H2 zinc finger protein, expressed
MaizeGDB (Corn) Zm00025a033713 , Zm00025a004954
Brachypodium -
Barley HORVU5Hr1G070450.4 , HORVU5Hr1G070450.6 , HORVU5Hr1G070450.2 , HORVU5Hr1G070450.5 , HORVU5Hr1G070450.3 , HORVU5Hr1G070450.1
Wheat TraesCS7A02G293100 , TraesCS5D02G257700 , TraesCS7B02G186200 , TraesCS7B02G186200 , TraesCS5D02G257700 , TraesCS5B02G248100 , TraesCS5B02G248100 , TraesCS5B02G248100 , TraesCS5B02G248100 , TraesCS5A02G250100 , TraesCS7D02G289600
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G277200 GPI transamidase subunit PIG-U domain containing protein, expressed K05293: GPI-anchor transamidase subunit U
2 Sobic.001G313700 expressed protein -
3 Sobic.002G299000 ribonuclease 2-5A family protein, expressed -
4 Sobic.003G337300 HEAT repeat family protein, putative, expressed K08876: SCY1-like protein 1
5 Sobic.002G366400 histone deacetylase, putative, expressed K11407: histone deacetylase 6
6 Sobic.003G104000 expressed protein K15133: mediator of RNA polymerase II transcription subunit 17
7 Sobic.008G099800 expressed protein -
8 Sobic.001G124200 ethylene receptor, putative, expressed K14509: ETR, ethylene receptor
9 Sobic.002G045600 transcriptional corepressor SEUSS, putative, expressed -
10 Sobic.006G040800 expressed protein -
11 Sobic.008G164600 expressed protein -
12 Sobic.006G240100 BRCA1-associated protein, putative, expressed K10632: BRCA1-associated protein
13 Sobic.003G408600 GYF domain containing protein, putative, expressed K18730: PERQ amino acid-rich with GYF domain-containing protein
14 Sobic.008G002500 RCD1, putative, expressed -
15 Sobic.007G132100 myrosinase precursor, putative, expressed -
16 Sobic.008G092300 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed -
17 Sobic.002G111600 expressed protein -
18 Sobic.007G183900 ubiquitin family protein, putative, expressed -
19 Sobic.010G118000 PHD-finger family protein, expressed K17586: PHD and RING finger domain-containing protein 1
20 Sobic.001G354600 SAP domain containing protein, expressed K12875: ACIN1, apoptotic chromatin condensation inducer in the nucleus


Gene co-expression network
sample Sobic007G225100 Sobic007G225100 Sobic004G277200 Sobic004G277200 Sobic007G225100--Sobic004G277200 Sobic001G313700 Sobic001G313700 Sobic007G225100--Sobic001G313700 Sobic002G299000 Sobic002G299000 Sobic007G225100--Sobic002G299000 Sobic003G337300 Sobic003G337300 Sobic007G225100--Sobic003G337300 Sobic002G366400 Sobic002G366400 Sobic007G225100--Sobic002G366400 Sobic003G104000 Sobic003G104000 Sobic007G225100--Sobic003G104000 Sobic008G099800 Sobic008G099800 Sobic007G225100--Sobic008G099800 Sobic001G124200 Sobic001G124200 Sobic007G225100--Sobic001G124200 Sobic002G045600 Sobic002G045600 Sobic007G225100--Sobic002G045600 Sobic004G135400 Sobic004G135400 Sobic004G277200--Sobic004G135400 Sobic004G277200--Sobic008G099800 Sobic010G118950 Sobic010G118950 Sobic004G277200--Sobic010G118950 Sobic004G277200--Sobic007G225100 Sobic004G277200--Sobic003G104000 Sobic006G208500 Sobic006G208500 Sobic004G277200--Sobic006G208500 Sobic003G332500 Sobic003G332500 Sobic004G277200--Sobic003G332500 Sobic006G200700 Sobic006G200700 Sobic004G277200--Sobic006G200700 Sobic009G201700 Sobic009G201700 Sobic004G277200--Sobic009G201700 Sobic003G360400 Sobic003G360400 Sobic001G313700--Sobic003G360400 Sobic001G313700--Sobic002G045600 Sobic009G044800 Sobic009G044800 Sobic001G313700--Sobic009G044800 Sobic010G112100 Sobic010G112100 Sobic001G313700--Sobic010G112100 Sobic003G408600 Sobic003G408600 Sobic001G313700--Sobic003G408600 Sobic001G273700 Sobic001G273700 Sobic001G313700--Sobic001G273700 Sobic002G154000 Sobic002G154000 Sobic001G313700--Sobic002G154000 Sobic001G313700--Sobic008G099800 Sobic001G457900 Sobic001G457900 Sobic001G313700--Sobic001G457900 Sobic001G382600 Sobic001G382600 Sobic002G299000--Sobic001G382600 Sobic002G299000--Sobic007G225100 Sobic002G299000--Sobic003G337300 Sobic002G299000--Sobic001G124200 Sobic008G112800 Sobic008G112800 Sobic002G299000--Sobic008G112800 Sobic004G039600 Sobic004G039600 Sobic002G299000--Sobic004G039600 Sobic008G089100 Sobic008G089100 Sobic002G299000--Sobic008G089100 Sobic007G132100 Sobic007G132100 Sobic002G299000--Sobic007G132100 Sobic006G131000 Sobic006G131000 Sobic002G299000--Sobic006G131000 Sobic003G337300--Sobic003G104000 Sobic010G004100 Sobic010G004100 Sobic003G337300--Sobic010G004100 Sobic002G137400 Sobic002G137400 Sobic003G337300--Sobic002G137400 Sobic003G337300--Sobic004G039600 Sobic003G337300--Sobic006G131000 Sobic004G344901 Sobic004G344901 Sobic003G337300--Sobic004G344901 Sobic004G322400 Sobic004G322400 Sobic003G337300--Sobic004G322400 Sobic003G337300--Sobic003G332500 Sobic001G415300 Sobic001G415300 Sobic003G337300--Sobic001G415300 Sobic002G366400--Sobic003G408600 Sobic002G366400--Sobic010G112100 Sobic007G159900 Sobic007G159900 Sobic002G366400--Sobic007G159900 Sobic006G118700 Sobic006G118700 Sobic002G366400--Sobic006G118700 Sobic002G366400--Sobic003G360400 Sobic002G366400--Sobic002G045600 Sobic007G183900 Sobic007G183900 Sobic002G366400--Sobic007G183900 Sobic003G266001 Sobic003G266001 Sobic002G366400--Sobic003G266001 Sobic001G354600 Sobic001G354600 Sobic002G366400--Sobic001G354600 Sobic003G104000--Sobic003G337300 Sobic002G256700 Sobic002G256700 Sobic003G104000--Sobic002G256700 Sobic006G126100 Sobic006G126100 Sobic003G104000--Sobic006G126100 Sobic001G251100 Sobic001G251100 Sobic003G104000--Sobic001G251100 Sobic002G142900 Sobic002G142900 Sobic003G104000--Sobic002G142900 Sobic002G295500 Sobic002G295500 Sobic003G104000--Sobic002G295500 Sobic003G104000--Sobic004G277200 Sobic004G131300 Sobic004G131300 Sobic003G104000--Sobic004G131300 Sobic006G261400 Sobic006G261400 Sobic003G104000--Sobic006G261400 Sobic006G012500 Sobic006G012500 Sobic008G099800--Sobic006G012500 Sobic001G534800 Sobic001G534800 Sobic008G099800--Sobic001G534800 Sobic008G099800--Sobic004G135400 Sobic001G347500 Sobic001G347500 Sobic008G099800--Sobic001G347500 Sobic001G281100 Sobic001G281100 Sobic008G099800--Sobic001G281100 Sobic004G113400 Sobic004G113400 Sobic008G099800--Sobic004G113400 Sobic008G099800--Sobic004G039600 Sobic003G072200 Sobic003G072200 Sobic008G099800--Sobic003G072200 Sobic001G065000 Sobic001G065000 Sobic008G099800--Sobic001G065000 Sobic010G205800 Sobic010G205800 Sobic001G124200--Sobic010G205800 Sobic010G020300 Sobic010G020300 Sobic001G124200--Sobic010G020300 Sobic003G155900 Sobic003G155900 Sobic001G124200--Sobic003G155900 Sobic001G124200--Sobic004G039600 Sobic010G278200 Sobic010G278200 Sobic001G124200--Sobic010G278200 Sobic001G124200--Sobic007G132100 Sobic009G138100 Sobic009G138100 Sobic001G124200--Sobic009G138100 Sobic001G390800 Sobic001G390800 Sobic001G124200--Sobic001G390800 Sobic009G228700 Sobic009G228700 Sobic001G124200--Sobic009G228700 Sobic002G045600--Sobic003G408600 Sobic009G027300 Sobic009G027300 Sobic002G045600--Sobic009G027300 Sobic002G045600--Sobic009G044800 Sobic007G163100 Sobic007G163100 Sobic002G045600--Sobic007G163100 Sobic002G045600--Sobic003G360400 Sobic002G045600--Sobic001G313700 Sobic004G200200 Sobic004G200200 Sobic002G045600--Sobic004G200200 Sobic001G207000 Sobic001G207000 Sobic002G045600--Sobic001G207000 Sobic003G422500 Sobic003G422500 Sobic002G045600--Sobic003G422500
Octagon: transcription factors


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