Gene annotation
Transcriptome id Sobic.008G092300.3,Sobic.008G092300.4
Synonym Sb08g012360
Functional annotation zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
UniProt A0A1Z5R5T8 , A0A1Z5R5M5
Pfam PF00642
Panther DB PTHR12506 PTHR12506:SF20
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G48440 : Zinc finger C-x8-C-x5-C-x3-H type family protein
RAP-DB (Rice) LOC_Os12g18120.2 : zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
MaizeGDB (Corn) Zm00025a054105
Brachypodium -
Barley HORVU5Hr1G033710.3 , HORVU5Hr1G033710.2 , HORVU5Hr1G033710.4
Wheat -
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G279700 signal peptide peptidase-like 2B, putative, expressed -
2 Sobic.001G094900 protein transport protein Sec23B, putative, expressed K14006: protein transport protein SEC23
3 Sobic.007G225100 ZOS8-09 - C2H2 zinc finger protein, expressed -
4 Sobic.001G261456 - -
5 Sobic.010G269100 zinc finger family protein, putative, expressed -
6 Sobic.003G126600 rab GDP dissociation inhibitor alpha, putative, expressed -
7 Sobic.008G112800 pre-mRNA-processing factor 6, putative, expressed K12855: PRPF6, pre-mRNA-processing factor 6
8 Sobic.001G102700 metalloendopeptidase/ metallopeptidase/ zinc ion binding protein, putative, expressed K01404: leishmanolysin
9 Sobic.004G039600 proteasome/cyclosome repeat containing protein, expressed K03028: PSMD2, 26S proteasome regulatory subunit N1
10 Sobic.003G332500 EAP30/Vps36 family domain containing protein, expressed K12190: VPS36, ESCRT-II complex subunit VPS36
11 Sobic.002G092300 WD domain, G-beta repeat domain containing protein, expressed -
12 Sobic.001G371200 SAC3/GANP family protein, putative, expressed -
13 Sobic.001G124200 ethylene receptor, putative, expressed K14509: ETR, ethylene receptor
14 Sobic.005G216300 RNA recognition motif containing protein, expressed K12837: splicing factor U2AF 65 kDa subunit
15 Sobic.001G281600 cyclin-dependent kinase E-1, putative, expressed K02208: cyclin-dependent kinase 8/11
16 Sobic.007G084100 expressed protein -
17 Sobic.002G126500 RNA recognition motif containing protein, expressed -
18 Sobic.003G401100 WW domain containing protein, expressed K12865: PQBP1, polyglutamine-binding protein 1
19 Sobic.004G257100 transmembrane 9 superfamily member, putative, expressed -
20 Sobic.004G192200 choline transporter-related, putative, expressed -


Gene co-expression network
sample Sobic008G092300 Sobic008G092300 Sobic010G279700 Sobic010G279700 Sobic008G092300--Sobic010G279700 Sobic001G094900 Sobic001G094900 Sobic008G092300--Sobic001G094900 Sobic007G225100 Sobic007G225100 Sobic008G092300--Sobic007G225100 Sobic001G261456 Sobic001G261456 Sobic008G092300--Sobic001G261456 Sobic010G269100 Sobic010G269100 Sobic008G092300--Sobic010G269100 Sobic003G126600 Sobic003G126600 Sobic008G092300--Sobic003G126600 Sobic008G112800 Sobic008G112800 Sobic008G092300--Sobic008G112800 Sobic001G102700 Sobic001G102700 Sobic008G092300--Sobic001G102700 Sobic004G039600 Sobic004G039600 Sobic008G092300--Sobic004G039600 Sobic001G281600 Sobic001G281600 Sobic010G279700--Sobic001G281600 Sobic008G083000 Sobic008G083000 Sobic010G279700--Sobic008G083000 Sobic003G401100 Sobic003G401100 Sobic010G279700--Sobic003G401100 Sobic010G279700--Sobic001G094900 Sobic007G191700 Sobic007G191700 Sobic010G279700--Sobic007G191700 Sobic005G106500 Sobic005G106500 Sobic010G279700--Sobic005G106500 Sobic010G279700--Sobic008G092300 Sobic007G203200 Sobic007G203200 Sobic010G279700--Sobic007G203200 Sobic004G021200 Sobic004G021200 Sobic010G279700--Sobic004G021200 Sobic001G094900--Sobic010G279700 Sobic006G118700 Sobic006G118700 Sobic001G094900--Sobic006G118700 Sobic001G094900--Sobic001G281600 Sobic001G094900--Sobic008G092300 Sobic007G183900 Sobic007G183900 Sobic001G094900--Sobic007G183900 Sobic008G179700 Sobic008G179700 Sobic001G094900--Sobic008G179700 Sobic001G124200 Sobic001G124200 Sobic001G094900--Sobic001G124200 Sobic001G094900--Sobic001G261456 Sobic001G094900--Sobic003G401100 Sobic004G277200 Sobic004G277200 Sobic007G225100--Sobic004G277200 Sobic001G313700 Sobic001G313700 Sobic007G225100--Sobic001G313700 Sobic002G299000 Sobic002G299000 Sobic007G225100--Sobic002G299000 Sobic003G337300 Sobic003G337300 Sobic007G225100--Sobic003G337300 Sobic002G366400 Sobic002G366400 Sobic007G225100--Sobic002G366400 Sobic003G104000 Sobic003G104000 Sobic007G225100--Sobic003G104000 Sobic008G099800 Sobic008G099800 Sobic007G225100--Sobic008G099800 Sobic007G225100--Sobic001G124200 Sobic002G045600 Sobic002G045600 Sobic007G225100--Sobic002G045600 Sobic001G261456--Sobic004G039600 Sobic001G261456--Sobic001G094900 Sobic001G261456--Sobic008G092300 Sobic001G261456--Sobic001G124200 Sobic009G219000 Sobic009G219000 Sobic001G261456--Sobic009G219000 Sobic001G371200 Sobic001G371200 Sobic001G261456--Sobic001G371200 Sobic003G400100 Sobic003G400100 Sobic001G261456--Sobic003G400100 Sobic001G261456--Sobic001G281600 Sobic001G143500 Sobic001G143500 Sobic001G261456--Sobic001G143500 Sobic003G099300 Sobic003G099300 Sobic010G269100--Sobic003G099300 Sobic002G256200 Sobic002G256200 Sobic010G269100--Sobic002G256200 Sobic010G269100--Sobic008G092300 Sobic006G056200 Sobic006G056200 Sobic010G269100--Sobic006G056200 Sobic010G239800 Sobic010G239800 Sobic010G269100--Sobic010G239800 Sobic002G268400 Sobic002G268400 Sobic010G269100--Sobic002G268400 Sobic006G278700 Sobic006G278700 Sobic010G269100--Sobic006G278700 Sobic010G085200 Sobic010G085200 Sobic010G269100--Sobic010G085200 Sobic009G033900 Sobic009G033900 Sobic010G269100--Sobic009G033900 Sobic003G126600--Sobic004G039600 Sobic003G249600 Sobic003G249600 Sobic003G126600--Sobic003G249600 Sobic009G229600 Sobic009G229600 Sobic003G126600--Sobic009G229600 Sobic003G187500 Sobic003G187500 Sobic003G126600--Sobic003G187500 Sobic010G053800 Sobic010G053800 Sobic003G126600--Sobic010G053800 Sobic001G518400 Sobic001G518400 Sobic003G126600--Sobic001G518400 Sobic001G369000 Sobic001G369000 Sobic003G126600--Sobic001G369000 Sobic003G187200 Sobic003G187200 Sobic003G126600--Sobic003G187200 Sobic004G072100 Sobic004G072100 Sobic003G126600--Sobic004G072100 Sobic004G274200 Sobic004G274200 Sobic008G112800--Sobic004G274200 Sobic010G236400 Sobic010G236400 Sobic008G112800--Sobic010G236400 Sobic001G392300 Sobic001G392300 Sobic008G112800--Sobic001G392300 Sobic002G126500 Sobic002G126500 Sobic008G112800--Sobic002G126500 Sobic009G044800 Sobic009G044800 Sobic008G112800--Sobic009G044800 Sobic007G132100 Sobic007G132100 Sobic008G112800--Sobic007G132100 Sobic004G257100 Sobic004G257100 Sobic008G112800--Sobic004G257100 Sobic008G112800--Sobic008G179700 Sobic008G112800--Sobic001G124200 Sobic001G026500 Sobic001G026500 Sobic001G102700--Sobic001G026500 Sobic001G111600 Sobic001G111600 Sobic001G102700--Sobic001G111600 Sobic001G362200 Sobic001G362200 Sobic001G102700--Sobic001G362200 Sobic002G313400 Sobic002G313400 Sobic001G102700--Sobic002G313400 Sobic010G275500 Sobic010G275500 Sobic001G102700--Sobic010G275500 Sobic008G118200 Sobic008G118200 Sobic001G102700--Sobic008G118200 Sobic001G102700--Sobic001G094900 Sobic005G220000 Sobic005G220000 Sobic001G102700--Sobic005G220000 Sobic005G128400 Sobic005G128400 Sobic001G102700--Sobic005G128400 Sobic006G012500 Sobic006G012500 Sobic004G039600--Sobic006G012500 Sobic004G039600--Sobic001G369000 Sobic004G039600--Sobic007G132100 Sobic004G039600--Sobic008G099800 Sobic006G126100 Sobic006G126100 Sobic004G039600--Sobic006G126100 Sobic004G039600--Sobic010G053800 Sobic006G131000 Sobic006G131000 Sobic004G039600--Sobic006G131000 Sobic001G534800 Sobic001G534800 Sobic004G039600--Sobic001G534800 Sobic007G120500 Sobic007G120500 Sobic004G039600--Sobic007G120500
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.