Gene annotation
Transcriptome id Sobic.004G192200.1
Synonym Sb04g024030
Functional annotation choline transporter-related, putative, expressed
UniProt A0A1Z5RP27
Pfam PF04515
Panther DB PTHR12385 PTHR12385:SF36
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G25500 : Plasma-membrane choline transporter family protein
RAP-DB (Rice) LOC_Os02g36960.1 : choline transporter-related, putative, expressed
MaizeGDB (Corn) Zm00025a020828
Brachypodium KQK00039 , KQK00040
Barley HORVU6Hr1G052250.4 , HORVU6Hr1G052250.3 , HORVU6Hr1G052250.2 , HORVU6Hr1G052250.1 , HORVU6Hr1G052250.6 , HORVU6Hr1G052250.7 , HORVU6Hr1G052250.5
Wheat TraesCS6D02G186600 , TraesCS6A02G200900 , TraesCS6B02G227000
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G362200 DHHC zinc finger domain containing protein, expressed K18932: palmitoyltransferase
2 Sobic.003G332500 EAP30/Vps36 family domain containing protein, expressed K12190: VPS36, ESCRT-II complex subunit VPS36
3 Sobic.008G092300 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed -
4 Sobic.006G032900 endonuclease/exonuclease/phosphatase family protein, putative, expressed -
5 Sobic.003G126600 rab GDP dissociation inhibitor alpha, putative, expressed -
6 Sobic.002G260900 protein kinase domain containing protein, expressed K13429: chitin elicitor receptor kinase 1
7 Sobic.010G232900 surp module family protein, putative, expressed -
8 Sobic.001G094900 protein transport protein Sec23B, putative, expressed K14006: protein transport protein SEC23
9 Sobic.003G266001 - -
10 Sobic.002G283600 AGAP005770-PA, putative, expressed -
11 Sobic.007G027700 expressed protein -
12 Sobic.007G225100 ZOS8-09 - C2H2 zinc finger protein, expressed -
13 Sobic.005G220000 - K12823: DDX5, ATP-dependent RNA helicase DDX5/DBP2
14 Sobic.004G321700 mitochondrial transcription termination factor family protein, putative, expressed K15032: mTERF domain-containing protein, mitochondrial
15 Sobic.001G051700 expressed protein -
16 Sobic.004G135300 - -
17 Sobic.004G309900 cold-induced protein, putative, expressed K13174: THO complex subunit 5
18 Sobic.001G003500 la domain containing protein, putative, expressed K18757: la-related protein 1
19 Sobic.004G325400 cyclic nucleotide-gated ion channel 14, putative, expressed K05391: cyclic nucleotide gated channel, plant
20 Sobic.003G187200 phox domain-containing protein, putative, expressed -


Gene co-expression network
sample Sobic004G192200 Sobic004G192200 Sobic001G362200 Sobic001G362200 Sobic004G192200--Sobic001G362200 Sobic003G332500 Sobic003G332500 Sobic004G192200--Sobic003G332500 Sobic008G092300 Sobic008G092300 Sobic004G192200--Sobic008G092300 Sobic006G032900 Sobic006G032900 Sobic004G192200--Sobic006G032900 Sobic003G126600 Sobic003G126600 Sobic004G192200--Sobic003G126600 Sobic002G260900 Sobic002G260900 Sobic004G192200--Sobic002G260900 Sobic010G232900 Sobic010G232900 Sobic004G192200--Sobic010G232900 Sobic001G094900 Sobic001G094900 Sobic004G192200--Sobic001G094900 Sobic003G266001 Sobic003G266001 Sobic004G192200--Sobic003G266001 Sobic001G362200--Sobic003G332500 Sobic003G109700 Sobic003G109700 Sobic001G362200--Sobic003G109700 Sobic001G362200--Sobic006G032900 Sobic001G102700 Sobic001G102700 Sobic001G362200--Sobic001G102700 Sobic001G515000 Sobic001G515000 Sobic001G362200--Sobic001G515000 Sobic001G362200--Sobic004G192200 Sobic004G072100 Sobic004G072100 Sobic001G362200--Sobic004G072100 Sobic002G134600 Sobic002G134600 Sobic001G362200--Sobic002G134600 Sobic007G183900 Sobic007G183900 Sobic001G362200--Sobic007G183900 Sobic003G337300 Sobic003G337300 Sobic003G332500--Sobic003G337300 Sobic004G277200 Sobic004G277200 Sobic003G332500--Sobic004G277200 Sobic003G104000 Sobic003G104000 Sobic003G332500--Sobic003G104000 Sobic006G126100 Sobic006G126100 Sobic003G332500--Sobic006G126100 Sobic003G332500--Sobic001G362200 Sobic007G132100 Sobic007G132100 Sobic003G332500--Sobic007G132100 Sobic003G332500--Sobic004G072100 Sobic001G096000 Sobic001G096000 Sobic003G332500--Sobic001G096000 Sobic010G004100 Sobic010G004100 Sobic003G332500--Sobic010G004100 Sobic010G279700 Sobic010G279700 Sobic008G092300--Sobic010G279700 Sobic008G092300--Sobic001G094900 Sobic007G225100 Sobic007G225100 Sobic008G092300--Sobic007G225100 Sobic001G261456 Sobic001G261456 Sobic008G092300--Sobic001G261456 Sobic010G269100 Sobic010G269100 Sobic008G092300--Sobic010G269100 Sobic008G092300--Sobic003G126600 Sobic008G112800 Sobic008G112800 Sobic008G092300--Sobic008G112800 Sobic008G092300--Sobic001G102700 Sobic004G039600 Sobic004G039600 Sobic008G092300--Sobic004G039600 Sobic006G032900--Sobic001G362200 Sobic006G032900--Sobic003G109700 Sobic001G518400 Sobic001G518400 Sobic006G032900--Sobic001G518400 Sobic002G317300 Sobic002G317300 Sobic006G032900--Sobic002G317300 Sobic001G226700 Sobic001G226700 Sobic006G032900--Sobic001G226700 Sobic008G083000 Sobic008G083000 Sobic006G032900--Sobic008G083000 Sobic003G401100 Sobic003G401100 Sobic006G032900--Sobic003G401100 Sobic006G032900--Sobic001G102700 Sobic009G103600 Sobic009G103600 Sobic006G032900--Sobic009G103600 Sobic003G126600--Sobic004G039600 Sobic003G249600 Sobic003G249600 Sobic003G126600--Sobic003G249600 Sobic009G229600 Sobic009G229600 Sobic003G126600--Sobic009G229600 Sobic003G187500 Sobic003G187500 Sobic003G126600--Sobic003G187500 Sobic010G053800 Sobic010G053800 Sobic003G126600--Sobic010G053800 Sobic003G126600--Sobic001G518400 Sobic001G369000 Sobic001G369000 Sobic003G126600--Sobic001G369000 Sobic003G187200 Sobic003G187200 Sobic003G126600--Sobic003G187200 Sobic003G126600--Sobic004G072100 Sobic002G260900--Sobic008G083000 Sobic002G260900--Sobic003G266001 Sobic001G493200 Sobic001G493200 Sobic002G260900--Sobic001G493200 Sobic004G113400 Sobic004G113400 Sobic002G260900--Sobic004G113400 Sobic004G021200 Sobic004G021200 Sobic002G260900--Sobic004G021200 Sobic008G103200 Sobic008G103200 Sobic002G260900--Sobic008G103200 Sobic002G260900--Sobic010G004100 Sobic003G394300 Sobic003G394300 Sobic002G260900--Sobic003G394300 Sobic006G237400 Sobic006G237400 Sobic002G260900--Sobic006G237400 Sobic001G042200 Sobic001G042200 Sobic010G232900--Sobic001G042200 Sobic007G027700 Sobic007G027700 Sobic010G232900--Sobic007G027700 Sobic008G127400 Sobic008G127400 Sobic010G232900--Sobic008G127400 Sobic010G239800 Sobic010G239800 Sobic010G232900--Sobic010G239800 Sobic002G280600 Sobic002G280600 Sobic010G232900--Sobic002G280600 Sobic010G232900--Sobic003G187200 Sobic003G006400 Sobic003G006400 Sobic010G232900--Sobic003G006400 Sobic006G204800 Sobic006G204800 Sobic010G232900--Sobic006G204800 Sobic001G526300 Sobic001G526300 Sobic010G232900--Sobic001G526300 Sobic001G094900--Sobic010G279700 Sobic006G118700 Sobic006G118700 Sobic001G094900--Sobic006G118700 Sobic001G281600 Sobic001G281600 Sobic001G094900--Sobic001G281600 Sobic001G094900--Sobic008G092300 Sobic001G094900--Sobic007G183900 Sobic008G179700 Sobic008G179700 Sobic001G094900--Sobic008G179700 Sobic001G124200 Sobic001G124200 Sobic001G094900--Sobic001G124200 Sobic001G094900--Sobic001G261456 Sobic001G094900--Sobic003G401100 Sobic003G266001--Sobic001G493200 Sobic005G128400 Sobic005G128400 Sobic003G266001--Sobic005G128400 Sobic003G266001--Sobic008G103200 Sobic010G069100 Sobic010G069100 Sobic003G266001--Sobic010G069100 Sobic003G408600 Sobic003G408600 Sobic003G266001--Sobic003G408600 Sobic003G266001--Sobic004G072100 Sobic003G266001--Sobic004G021200 Sobic001G311500 Sobic001G311500 Sobic003G266001--Sobic001G311500 Sobic007G159900 Sobic007G159900 Sobic003G266001--Sobic007G159900
Octagon: transcription factors


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