Gene annotation
Transcriptome id Sobic.001G003500.1,Sobic.001G003500.3,Sobic.001G003500.2
Synonym Sb01g000420
Functional annotation la domain containing protein, putative, expressed
UniProt C5WRV8
Pfam PF05383
Panther DB PTHR22792:SF72 PTHR22792 PTHR22792 PTHR22792:SF72
NCBI CDD -
KEGG Orthology K18757; la-related protein 1
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G66100 : winged-helix DNA-binding transcription factor family protein
RAP-DB (Rice) LOC_Os03g06070.1 : la domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a016284 , Zm00025a009130
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G321700 mitochondrial transcription termination factor family protein, putative, expressed K15032: mTERF domain-containing protein, mitochondrial
2 Sobic.008G147200 tubulin, putative, expressed -
3 Sobic.002G052700 cyclophilin, putative, expressed K09566: peptidyl-prolyl isomerase G (cyclophilin G)
4 Sobic.001G291800 eukaryotic translation initiation factor 3 subunit B, putative, expressed K03253: translation initiation factor 3 subunit B
5 Sobic.005G220000 - K12823: DDX5, ATP-dependent RNA helicase DDX5/DBP2
6 Sobic.010G007100 AAA family ATPase, putative, expressed K14571: RIX7, ribosome biogenesis ATPase
7 Sobic.004G357400 beta-catenin-like protein 1, putative, expressed K12864: beta-catenin-like protein 1
8 Sobic.004G095300 RNA recognition motif containing protein, expressed K12741: heterogeneous nuclear ribonucleoprotein A1/A3
9 Sobic.006G125900 elongator complex protein 3, putative, expressed K07739: ELP3, elongator complex protein 3
10 Sobic.004G340400 translation initiation factor eIF-2B subunit epsilon, putative, expressed K03240: translation initiation factor eIF-2B subunit epsilon
11 Sobic.001G362200 DHHC zinc finger domain containing protein, expressed K18932: palmitoyltransferase
12 Sobic.010G186600 expressed protein -
13 Sobic.008G080200 leucine-rich repeat family protein, putative, expressed -
14 Sobic.002G009200 - K15456: protein KTI12
15 Sobic.003G104000 expressed protein K15133: mediator of RNA polymerase II transcription subunit 17
16 Sobic.004G353000 ABC transporter, ATP-binding protein, putative, expressed K06158: ATP-binding cassette, subfamily F, member 3
17 Sobic.006G077200 ubiquitin interaction motif-containing protein, putative, expressed -
18 Sobic.007G039400 tRNA synthetase, putative, expressed K01866: YARS, tyrosyl-tRNA synthetase
19 Sobic.009G131900 - K18177: cytochrome c oxidase assembly factor 4
20 Sobic.002G145800 flowering time control protein FCA, putative, expressed -


Gene co-expression network
sample Sobic001G003500 Sobic001G003500 Sobic004G321700 Sobic004G321700 Sobic001G003500--Sobic004G321700 Sobic008G147200 Sobic008G147200 Sobic001G003500--Sobic008G147200 Sobic002G052700 Sobic002G052700 Sobic001G003500--Sobic002G052700 Sobic001G291800 Sobic001G291800 Sobic001G003500--Sobic001G291800 Sobic005G220000 Sobic005G220000 Sobic001G003500--Sobic005G220000 Sobic010G007100 Sobic010G007100 Sobic001G003500--Sobic010G007100 Sobic004G357400 Sobic004G357400 Sobic001G003500--Sobic004G357400 Sobic004G095300 Sobic004G095300 Sobic001G003500--Sobic004G095300 Sobic006G125900 Sobic006G125900 Sobic001G003500--Sobic006G125900 Sobic004G321700--Sobic008G147200 Sobic001G393900 Sobic001G393900 Sobic004G321700--Sobic001G393900 Sobic004G332400 Sobic004G332400 Sobic004G321700--Sobic004G332400 Sobic001G346900 Sobic001G346900 Sobic004G321700--Sobic001G346900 Sobic006G002800 Sobic006G002800 Sobic004G321700--Sobic006G002800 Sobic004G309900 Sobic004G309900 Sobic004G321700--Sobic004G309900 Sobic004G321700--Sobic001G003500 Sobic003G362900 Sobic003G362900 Sobic004G321700--Sobic003G362900 Sobic004G321700--Sobic002G052700 Sobic008G147200--Sobic004G321700 Sobic005G137700 Sobic005G137700 Sobic008G147200--Sobic005G137700 Sobic006G269800 Sobic006G269800 Sobic008G147200--Sobic006G269800 Sobic010G186600 Sobic010G186600 Sobic008G147200--Sobic010G186600 Sobic002G145800 Sobic002G145800 Sobic008G147200--Sobic002G145800 Sobic008G147200--Sobic010G007100 Sobic008G147200--Sobic001G346900 Sobic003G042400 Sobic003G042400 Sobic008G147200--Sobic003G042400 Sobic008G147200--Sobic001G291800 Sobic001G251100 Sobic001G251100 Sobic002G052700--Sobic001G251100 Sobic002G052700--Sobic004G357400 Sobic002G052700--Sobic003G042400 Sobic002G052700--Sobic004G321700 Sobic002G052700--Sobic001G393900 Sobic002G052700--Sobic001G003500 Sobic001G052400 Sobic001G052400 Sobic002G052700--Sobic001G052400 Sobic003G379200 Sobic003G379200 Sobic002G052700--Sobic003G379200 Sobic002G052700--Sobic008G147200 Sobic004G340400 Sobic004G340400 Sobic001G291800--Sobic004G340400 Sobic001G145400 Sobic001G145400 Sobic001G291800--Sobic001G145400 Sobic005G115500 Sobic005G115500 Sobic001G291800--Sobic005G115500 Sobic004G353000 Sobic004G353000 Sobic001G291800--Sobic004G353000 Sobic001G291800--Sobic010G186600 Sobic009G255600 Sobic009G255600 Sobic001G291800--Sobic009G255600 Sobic001G291800--Sobic008G147200 Sobic007G039400 Sobic007G039400 Sobic001G291800--Sobic007G039400 Sobic001G168900 Sobic001G168900 Sobic001G291800--Sobic001G168900 Sobic001G111600 Sobic001G111600 Sobic005G220000--Sobic001G111600 Sobic005G220000--Sobic002G145800 Sobic007G183900 Sobic007G183900 Sobic005G220000--Sobic007G183900 Sobic005G128400 Sobic005G128400 Sobic005G220000--Sobic005G128400 Sobic003G293200 Sobic003G293200 Sobic005G220000--Sobic003G293200 Sobic007G183300 Sobic007G183300 Sobic005G220000--Sobic007G183300 Sobic003G062300 Sobic003G062300 Sobic005G220000--Sobic003G062300 Sobic010G085200 Sobic010G085200 Sobic005G220000--Sobic010G085200 Sobic001G026500 Sobic001G026500 Sobic005G220000--Sobic001G026500 Sobic010G007100--Sobic001G145400 Sobic010G007100--Sobic008G147200 Sobic010G007100--Sobic004G340400 Sobic006G086600 Sobic006G086600 Sobic010G007100--Sobic006G086600 Sobic010G007100--Sobic005G137700 Sobic006G077200 Sobic006G077200 Sobic010G007100--Sobic006G077200 Sobic002G235200 Sobic002G235200 Sobic010G007100--Sobic002G235200 Sobic010G007100--Sobic006G002800 Sobic010G007100--Sobic003G042400 Sobic004G357400--Sobic002G052700 Sobic004G357400--Sobic001G251100 Sobic004G357400--Sobic001G003500 Sobic003G104000 Sobic003G104000 Sobic004G357400--Sobic003G104000 Sobic009G134900 Sobic009G134900 Sobic004G357400--Sobic009G134900 Sobic003G293300 Sobic003G293300 Sobic004G357400--Sobic003G293300 Sobic002G256700 Sobic002G256700 Sobic004G357400--Sobic002G256700 Sobic006G084000 Sobic006G084000 Sobic004G357400--Sobic006G084000 Sobic009G131900 Sobic009G131900 Sobic004G357400--Sobic009G131900 Sobic010G171100 Sobic010G171100 Sobic004G095300--Sobic010G171100 Sobic003G123000 Sobic003G123000 Sobic004G095300--Sobic003G123000 Sobic004G095300--Sobic001G003500 Sobic002G092300 Sobic002G092300 Sobic004G095300--Sobic002G092300 Sobic001G473600 Sobic001G473600 Sobic004G095300--Sobic001G473600 Sobic001G088100 Sobic001G088100 Sobic004G095300--Sobic001G088100 Sobic004G095300--Sobic005G220000 Sobic004G095300--Sobic010G085200 Sobic002G180000 Sobic002G180000 Sobic004G095300--Sobic002G180000 Sobic001G453400 Sobic001G453400 Sobic006G125900--Sobic001G453400 Sobic006G125900--Sobic001G145400 Sobic006G125900--Sobic001G052400 Sobic008G051200 Sobic008G051200 Sobic006G125900--Sobic008G051200 Sobic010G174700 Sobic010G174700 Sobic006G125900--Sobic010G174700 Sobic001G429600 Sobic001G429600 Sobic006G125900--Sobic001G429600 Sobic006G125900--Sobic004G340400 Sobic007G217100 Sobic007G217100 Sobic006G125900--Sobic007G217100 Sobic010G003400 Sobic010G003400 Sobic006G125900--Sobic010G003400
Octagon: transcription factors


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