Gene annotation
Transcriptome id Sobic.004G357400.1
Synonym Sb04g038390
Functional annotation beta-catenin-like protein 1, putative, expressed
UniProt A0A1Z5RQL4
Pfam PF08216
Panther DB PTHR14978 PTHR14978:SF0
NCBI CDD KOG2734; Uncharacterized conserved protein
KEGG Orthology K12864; beta-catenin-like protein 1
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G02710 : ARM repeat superfamily protein
RAP-DB (Rice) LOC_Os02g58460.1 : beta-catenin-like protein 1, putative, expressed
MaizeGDB (Corn) Zm00025a022677
Brachypodium KQK02162
Barley HORVU7Hr1G116590.3 , HORVU7Hr1G116590.2 , HORVU7Hr1G116590.1
Wheat TraesCS7D02G491600 , TraesCS7D02G491600 , TraesCS7A02G504500 , TraesCS7A02G504500 , TraesCS7B02G411500 , TraesCS7B02G411500
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.004G357400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G052700 cyclophilin, putative, expressed K09566: peptidyl-prolyl isomerase G (cyclophilin G)
2 Sobic.001G251100 endonuclease/exonuclease/phosphatase family domain containing protein, expressed K12603: CNOT6, CCR4-NOT transcription complex subunit 6
3 Sobic.001G003500 la domain containing protein, putative, expressed K18757: la-related protein 1
4 Sobic.003G104000 expressed protein K15133: mediator of RNA polymerase II transcription subunit 17
5 Sobic.009G134900 PPR repeat domain containing protein, putative, expressed -
6 Sobic.003G293300 nucleoporin, putative, expressed K14304: nuclear pore complex protein Nup85
7 Sobic.002G256700 ubiquitin carboxyl-terminal hydrolase family protein, expressed K11844: ubiquitin carboxyl-terminal hydrolase 16/45
8 Sobic.006G084000 CDK5RAP1, putative, expressed K15865: threonylcarbamoyladenosine tRNA methylthiotransferase CDKAL1
9 Sobic.009G131900 - K18177: cytochrome c oxidase assembly factor 4
10 Sobic.004G277200 GPI transamidase subunit PIG-U domain containing protein, expressed K05293: GPI-anchor transamidase subunit U
11 Sobic.002G372500 exportin 1, putative, expressed K14288: exportin-T
12 Sobic.008G051200 chaperone protein dnaJ, putative, expressed K03686: molecular chaperone DnaJ
13 Sobic.001G248100 histone acetyltransferase GCN5, putative, expressed K06062: PCAF, KAT2, histone acetyltransferase
14 Sobic.010G102600 pentatricopeptide, putative, expressed -
15 Sobic.008G040700 mRNA-decapping enzyme, putative, expressed K12611: mRNA-decapping enzyme 1B
16 Sobic.003G332500 EAP30/Vps36 family domain containing protein, expressed K12190: VPS36, ESCRT-II complex subunit VPS36
17 Sobic.006G002800 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed K15332: tRNA (uracil-5-)-methyltransferase
18 Sobic.002G171300 - -
19 Sobic.001G096000 CWF19-like 2, cell cycle control, putative, expressed -
20 Sobic.004G224600 expressed protein -


Gene co-expression network
sample Sobic004G357400 Sobic004G357400 Sobic002G052700 Sobic002G052700 Sobic004G357400--Sobic002G052700 Sobic001G251100 Sobic001G251100 Sobic004G357400--Sobic001G251100 Sobic001G003500 Sobic001G003500 Sobic004G357400--Sobic001G003500 Sobic003G104000 Sobic003G104000 Sobic004G357400--Sobic003G104000 Sobic009G134900 Sobic009G134900 Sobic004G357400--Sobic009G134900 Sobic003G293300 Sobic003G293300 Sobic004G357400--Sobic003G293300 Sobic002G256700 Sobic002G256700 Sobic004G357400--Sobic002G256700 Sobic006G084000 Sobic006G084000 Sobic004G357400--Sobic006G084000 Sobic009G131900 Sobic009G131900 Sobic004G357400--Sobic009G131900 Sobic002G052700--Sobic001G251100 Sobic002G052700--Sobic004G357400 Sobic003G042400 Sobic003G042400 Sobic002G052700--Sobic003G042400 Sobic004G321700 Sobic004G321700 Sobic002G052700--Sobic004G321700 Sobic001G393900 Sobic001G393900 Sobic002G052700--Sobic001G393900 Sobic002G052700--Sobic001G003500 Sobic001G052400 Sobic001G052400 Sobic002G052700--Sobic001G052400 Sobic003G379200 Sobic003G379200 Sobic002G052700--Sobic003G379200 Sobic008G147200 Sobic008G147200 Sobic002G052700--Sobic008G147200 Sobic001G251100--Sobic003G104000 Sobic001G251100--Sobic002G256700 Sobic004G131300 Sobic004G131300 Sobic001G251100--Sobic004G131300 Sobic002G133300 Sobic002G133300 Sobic001G251100--Sobic002G133300 Sobic001G251100--Sobic003G293300 Sobic007G054800 Sobic007G054800 Sobic001G251100--Sobic007G054800 Sobic001G493700 Sobic001G493700 Sobic001G251100--Sobic001G493700 Sobic004G257100 Sobic004G257100 Sobic001G251100--Sobic004G257100 Sobic001G251100--Sobic003G379200 Sobic001G003500--Sobic004G321700 Sobic001G003500--Sobic008G147200 Sobic001G003500--Sobic002G052700 Sobic001G291800 Sobic001G291800 Sobic001G003500--Sobic001G291800 Sobic005G220000 Sobic005G220000 Sobic001G003500--Sobic005G220000 Sobic010G007100 Sobic010G007100 Sobic001G003500--Sobic010G007100 Sobic001G003500--Sobic004G357400 Sobic004G095300 Sobic004G095300 Sobic001G003500--Sobic004G095300 Sobic006G125900 Sobic006G125900 Sobic001G003500--Sobic006G125900 Sobic003G337300 Sobic003G337300 Sobic003G104000--Sobic003G337300 Sobic003G104000--Sobic002G256700 Sobic006G126100 Sobic006G126100 Sobic003G104000--Sobic006G126100 Sobic003G104000--Sobic001G251100 Sobic002G142900 Sobic002G142900 Sobic003G104000--Sobic002G142900 Sobic002G295500 Sobic002G295500 Sobic003G104000--Sobic002G295500 Sobic004G277200 Sobic004G277200 Sobic003G104000--Sobic004G277200 Sobic003G104000--Sobic004G131300 Sobic006G261400 Sobic006G261400 Sobic003G104000--Sobic006G261400 Sobic004G322300 Sobic004G322300 Sobic009G134900--Sobic004G322300 Sobic009G134900--Sobic004G357400 Sobic001G488100 Sobic001G488100 Sobic009G134900--Sobic001G488100 Sobic004G315500 Sobic004G315500 Sobic009G134900--Sobic004G315500 Sobic004G224600 Sobic004G224600 Sobic009G134900--Sobic004G224600 Sobic010G081700 Sobic010G081700 Sobic009G134900--Sobic010G081700 Sobic001G015400 Sobic001G015400 Sobic009G134900--Sobic001G015400 Sobic010G188000 Sobic010G188000 Sobic009G134900--Sobic010G188000 Sobic003G230600 Sobic003G230600 Sobic009G134900--Sobic003G230600 Sobic003G293300--Sobic001G251100 Sobic006G010000 Sobic006G010000 Sobic003G293300--Sobic006G010000 Sobic002G020700 Sobic002G020700 Sobic003G293300--Sobic002G020700 Sobic001G333100 Sobic001G333100 Sobic003G293300--Sobic001G333100 Sobic003G218300 Sobic003G218300 Sobic003G293300--Sobic003G218300 Sobic002G071000 Sobic002G071000 Sobic003G293300--Sobic002G071000 Sobic001G234200 Sobic001G234200 Sobic003G293300--Sobic001G234200 Sobic003G113800 Sobic003G113800 Sobic003G293300--Sobic003G113800 Sobic008G088806 Sobic008G088806 Sobic003G293300--Sobic008G088806 Sobic002G256700--Sobic003G104000 Sobic002G256700--Sobic001G493700 Sobic002G256700--Sobic007G054800 Sobic002G256700--Sobic001G251100 Sobic002G256700--Sobic002G142900 Sobic002G256700--Sobic004G131300 Sobic006G280000 Sobic006G280000 Sobic002G256700--Sobic006G280000 Sobic002G256700--Sobic002G133300 Sobic001G117200 Sobic001G117200 Sobic002G256700--Sobic001G117200 Sobic006G269900 Sobic006G269900 Sobic006G084000--Sobic006G269900 Sobic008G160000 Sobic008G160000 Sobic006G084000--Sobic008G160000 Sobic006G010400 Sobic006G010400 Sobic006G084000--Sobic006G010400 Sobic003G407600 Sobic003G407600 Sobic006G084000--Sobic003G407600 Sobic006G084000--Sobic004G224600 Sobic001G259000 Sobic001G259000 Sobic006G084000--Sobic001G259000 Sobic003G382500 Sobic003G382500 Sobic006G084000--Sobic003G382500 Sobic010G247400 Sobic010G247400 Sobic006G084000--Sobic010G247400 Sobic009G246500 Sobic009G246500 Sobic006G084000--Sobic009G246500 Sobic009G131900--Sobic003G104000 Sobic006G270600 Sobic006G270600 Sobic009G131900--Sobic006G270600 Sobic004G316700 Sobic004G316700 Sobic009G131900--Sobic004G316700 Sobic007G042900 Sobic007G042900 Sobic009G131900--Sobic007G042900 Sobic003G182300 Sobic003G182300 Sobic009G131900--Sobic003G182300 Sobic010G235200 Sobic010G235200 Sobic009G131900--Sobic010G235200 Sobic006G131000 Sobic006G131000 Sobic009G131900--Sobic006G131000 Sobic008G129600 Sobic008G129600 Sobic009G131900--Sobic008G129600 Sobic010G264000 Sobic010G264000 Sobic009G131900--Sobic010G264000
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.