Gene annotation
Transcriptome id Sobic.009G134900.1
Synonym Sb09g020090
Functional annotation PPR repeat domain containing protein, putative, expressed
UniProt C5YXS1
Pfam PF01535 PF13041
Panther DB PTHR24015 PTHR24015:SF826
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G30780 : Tetratricopeptide repeat (TPR)-like superfamily protein
RAP-DB (Rice) LOC_Os05g33760.1 : PPR repeat domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a043668
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G322300 nucleotide binding protein, putative, expressed K03351: anaphase-promoting complex subunit 4
2 Sobic.004G357400 beta-catenin-like protein 1, putative, expressed K12864: beta-catenin-like protein 1
3 Sobic.001G488100 OsNucAP1 - Putative Nucleoporin Autopeptidase homologue, expressed K14297: NUP98, ADAR2, nuclear pore complex protein Nup98-Nup96
4 Sobic.004G315500 RFC5 - Putative clamp loader of PCNA, replication factor C subunit 5, expressed K10756: replication factor C subunit 3/5
5 Sobic.004G224600 expressed protein -
6 Sobic.010G081700 PPR repeat domain containing protein, putative, expressed -
7 Sobic.001G015400 elongation factor, putative, expressed K02355: fusA, GFM, elongation factor G
8 Sobic.010G188000 elongation factor, putative, expressed K12852: 116 kDa U5 small nuclear ribonucleoprotein component
9 Sobic.003G230600 transcription factor X1, putative, expressed -
10 Sobic.003G143800 nodal modulator 1 precursor, putative, expressed -
11 Sobic.002G052700 cyclophilin, putative, expressed K09566: peptidyl-prolyl isomerase G (cyclophilin G)
12 Sobic.001G461300 PPR repeat domain containing protein, putative, expressed -
13 Sobic.002G372500 exportin 1, putative, expressed K14288: exportin-T
14 Sobic.007G155500 pentatricopeptide containing protein, putative, expressed -
15 Sobic.001G408600 RNA pseudouridine synthase, putative, expressed -
16 Sobic.006G137700 Spc97 / Spc98 family protein, putative, expressed K16569: TUBGCP2, gamma-tubulin complex component 2
17 Sobic.006G002800 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed K15332: tRNA (uracil-5-)-methyltransferase
18 Sobic.009G246500 N-acetyltransferase 10, putative, expressed K14521: NAT10, N-acetyltransferase 10
19 Sobic.002G371600 Spc97 / Spc98 family protein, putative, expressed K16572: TUBGCP5, gamma-tubulin complex component 5
20 Sobic.004G208500 eukaryotic translation initiation factor 2A, putative, expressed K15026: translation initiation factor 2A


Gene co-expression network
sample Sobic009G134900 Sobic009G134900 Sobic004G322300 Sobic004G322300 Sobic009G134900--Sobic004G322300 Sobic004G357400 Sobic004G357400 Sobic009G134900--Sobic004G357400 Sobic001G488100 Sobic001G488100 Sobic009G134900--Sobic001G488100 Sobic004G315500 Sobic004G315500 Sobic009G134900--Sobic004G315500 Sobic004G224600 Sobic004G224600 Sobic009G134900--Sobic004G224600 Sobic010G081700 Sobic010G081700 Sobic009G134900--Sobic010G081700 Sobic001G015400 Sobic001G015400 Sobic009G134900--Sobic001G015400 Sobic010G188000 Sobic010G188000 Sobic009G134900--Sobic010G188000 Sobic003G230600 Sobic003G230600 Sobic009G134900--Sobic003G230600 Sobic002G371600 Sobic002G371600 Sobic004G322300--Sobic002G371600 Sobic003G388000 Sobic003G388000 Sobic004G322300--Sobic003G388000 Sobic004G322300--Sobic004G315500 Sobic004G322300--Sobic009G134900 Sobic004G322300--Sobic010G081700 Sobic006G178100 Sobic006G178100 Sobic004G322300--Sobic006G178100 Sobic008G111600 Sobic008G111600 Sobic004G322300--Sobic008G111600 Sobic002G160700 Sobic002G160700 Sobic004G322300--Sobic002G160700 Sobic003G306400 Sobic003G306400 Sobic004G322300--Sobic003G306400 Sobic002G052700 Sobic002G052700 Sobic004G357400--Sobic002G052700 Sobic001G251100 Sobic001G251100 Sobic004G357400--Sobic001G251100 Sobic001G003500 Sobic001G003500 Sobic004G357400--Sobic001G003500 Sobic003G104000 Sobic003G104000 Sobic004G357400--Sobic003G104000 Sobic004G357400--Sobic009G134900 Sobic003G293300 Sobic003G293300 Sobic004G357400--Sobic003G293300 Sobic002G256700 Sobic002G256700 Sobic004G357400--Sobic002G256700 Sobic006G084000 Sobic006G084000 Sobic004G357400--Sobic006G084000 Sobic009G131900 Sobic009G131900 Sobic004G357400--Sobic009G131900 Sobic001G488100--Sobic004G315500 Sobic006G137700 Sobic006G137700 Sobic001G488100--Sobic006G137700 Sobic002G405500 Sobic002G405500 Sobic001G488100--Sobic002G405500 Sobic009G234700 Sobic009G234700 Sobic001G488100--Sobic009G234700 Sobic001G488100--Sobic010G188000 Sobic006G002800 Sobic006G002800 Sobic001G488100--Sobic006G002800 Sobic001G373000 Sobic001G373000 Sobic001G488100--Sobic001G373000 Sobic001G488100--Sobic009G134900 Sobic008G160000 Sobic008G160000 Sobic001G488100--Sobic008G160000 Sobic004G315500--Sobic001G488100 Sobic005G010900 Sobic005G010900 Sobic004G315500--Sobic005G010900 Sobic004G315500--Sobic001G373000 Sobic004G315500--Sobic010G188000 Sobic004G315500--Sobic004G322300 Sobic004G315500--Sobic006G137700 Sobic001G239800 Sobic001G239800 Sobic004G315500--Sobic001G239800 Sobic007G089800 Sobic007G089800 Sobic004G315500--Sobic007G089800 Sobic003G123100 Sobic003G123100 Sobic004G315500--Sobic003G123100 Sobic004G224600--Sobic006G002800 Sobic003G146600 Sobic003G146600 Sobic004G224600--Sobic003G146600 Sobic001G376900 Sobic001G376900 Sobic004G224600--Sobic001G376900 Sobic006G125500 Sobic006G125500 Sobic004G224600--Sobic006G125500 Sobic002G235200 Sobic002G235200 Sobic004G224600--Sobic002G235200 Sobic009G246500 Sobic009G246500 Sobic004G224600--Sobic009G246500 Sobic003G042400 Sobic003G042400 Sobic004G224600--Sobic003G042400 Sobic001G145400 Sobic001G145400 Sobic004G224600--Sobic001G145400 Sobic006G086600 Sobic006G086600 Sobic004G224600--Sobic006G086600 Sobic001G460500 Sobic001G460500 Sobic010G081700--Sobic001G460500 Sobic004G348600 Sobic004G348600 Sobic010G081700--Sobic004G348600 Sobic004G208500 Sobic004G208500 Sobic010G081700--Sobic004G208500 Sobic010G081700--Sobic004G322300 Sobic002G398700 Sobic002G398700 Sobic010G081700--Sobic002G398700 Sobic006G106300 Sobic006G106300 Sobic010G081700--Sobic006G106300 Sobic002G408900 Sobic002G408900 Sobic010G081700--Sobic002G408900 Sobic004G356200 Sobic004G356200 Sobic010G081700--Sobic004G356200 Sobic002G150700 Sobic002G150700 Sobic010G081700--Sobic002G150700 Sobic001G099900 Sobic001G099900 Sobic001G015400--Sobic001G099900 Sobic001G015400--Sobic004G208500 Sobic007G005500 Sobic007G005500 Sobic001G015400--Sobic007G005500 Sobic006G021700 Sobic006G021700 Sobic001G015400--Sobic006G021700 Sobic003G143800 Sobic003G143800 Sobic001G015400--Sobic003G143800 Sobic006G260500 Sobic006G260500 Sobic001G015400--Sobic006G260500 Sobic003G182300 Sobic003G182300 Sobic001G015400--Sobic003G182300 Sobic001G015400--Sobic002G398700 Sobic001G015400--Sobic006G106300 Sobic010G188000--Sobic001G373000 Sobic004G038100 Sobic004G038100 Sobic010G188000--Sobic004G038100 Sobic010G188000--Sobic002G371600 Sobic006G181800 Sobic006G181800 Sobic010G188000--Sobic006G181800 Sobic001G451300 Sobic001G451300 Sobic010G188000--Sobic001G451300 Sobic010G188000--Sobic002G160700 Sobic010G188000--Sobic004G315500 Sobic010G188000--Sobic005G010900 Sobic010G236600 Sobic010G236600 Sobic010G188000--Sobic010G236600 Sobic005G114500 Sobic005G114500 Sobic003G230600--Sobic005G114500 Sobic001G125500 Sobic001G125500 Sobic003G230600--Sobic001G125500 Sobic009G128500 Sobic009G128500 Sobic003G230600--Sobic009G128500 Sobic001G308400 Sobic001G308400 Sobic003G230600--Sobic001G308400 Sobic007G145400 Sobic007G145400 Sobic003G230600--Sobic007G145400 Sobic008G092800 Sobic008G092800 Sobic003G230600--Sobic008G092800 Sobic003G230600--Sobic003G143800 Sobic002G363800 Sobic002G363800 Sobic003G230600--Sobic002G363800 Sobic001G097500 Sobic001G097500 Sobic003G230600--Sobic001G097500
Octagon: transcription factors


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