Gene annotation
Transcriptome id Sobic.003G230600.1
Synonym RDM12, IDN2, Sb03g028860
Functional annotation transcription factor X1, putative, expressed
UniProt C5XEH0 , O48878
Pfam PF03470 PF03468 PF03469
Panther DB PTHR21596 PTHR21596:SF26
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G48670 : XH/XS domain-containing protein
RAP-DB (Rice) LOC_Os01g44230.1 : transcription factor X1, putative, expressed
MaizeGDB (Corn) Zm00025a028312
Brachypodium KQK08878 , KQK08879 , KQK08877 , PNT72446
Barley HORVU7Hr1G115180.11 , HORVU7Hr1G115180.10 , HORVU7Hr1G115180.13 , HORVU7Hr1G115180.12 , HORVU7Hr1G115180.14 , HORVU7Hr1G115180.5 , HORVU7Hr1G115180.4 , HORVU7Hr1G115180.7 , HORVU7Hr1G115180.6 , HORVU7Hr1G115180.1 , HORVU7Hr1G115180.3 , HORVU7Hr1G115180.2 , HORVU7Hr1G115180.9
Wheat TraesCS7D02G505300 , TraesCS7B02G431600 , TraesCS7B02G431600 , TraesCS7A02G514900 , TraesCS6D02G292500 , TraesCS7A02G514900
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G114500 growth regulator related protein, putative, expressed -
2 Sobic.001G125500 ethylene-insensitive protein, putative, expressed K14513: ethylene-insensitive protein 2
3 Sobic.009G128500 CBS domain containing protein, expressed K16302: metal transporter CNNM
4 Sobic.001G308400 expressed protein -
5 Sobic.007G145400 expressed protein -
6 Sobic.008G092800 expressed protein -
7 Sobic.003G143800 nodal modulator 1 precursor, putative, expressed -
8 Sobic.002G363800 expressed protein -
9 Sobic.001G097500 expressed protein -
10 Sobic.006G154100 mRNA cap guanine-N7 methyltransferase 2, putative, expressed K00565: mRNA (guanine-N7-)-methyltransferase
11 Sobic.005G059500 expressed protein -
12 Sobic.001G097900 expressed protein -
13 Sobic.001G467100 SURF1, putative, expressed K14998: SURF1, surfeit locus 1 family protein
14 Sobic.003G314300 WD domain, G-beta repeat domain containing protein, expressed -
15 Sobic.006G239400 ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed K11366: USP22_27_51, ubiquitin carboxyl-terminal hydrolase 22/27/51
16 Sobic.010G033600 BRCA1 C Terminus domain containing protein, expressed K10803: DNA-repair protein XRCC1
17 Sobic.010G087400 growth regulator related protein, putative, expressed -
18 Sobic.002G340000 FAR1 family protein, expressed -
19 Sobic.009G003700 PINHEAD, putative, expressed K11593: ELF2C, eukaryotic translation initiation factor 2C
20 Sobic.006G245900 FAR1 family protein, expressed -


Gene co-expression network
sample Sobic003G230600 Sobic003G230600 Sobic005G114500 Sobic005G114500 Sobic003G230600--Sobic005G114500 Sobic001G125500 Sobic001G125500 Sobic003G230600--Sobic001G125500 Sobic009G128500 Sobic009G128500 Sobic003G230600--Sobic009G128500 Sobic001G308400 Sobic001G308400 Sobic003G230600--Sobic001G308400 Sobic007G145400 Sobic007G145400 Sobic003G230600--Sobic007G145400 Sobic008G092800 Sobic008G092800 Sobic003G230600--Sobic008G092800 Sobic003G143800 Sobic003G143800 Sobic003G230600--Sobic003G143800 Sobic002G363800 Sobic002G363800 Sobic003G230600--Sobic002G363800 Sobic001G097500 Sobic001G097500 Sobic003G230600--Sobic001G097500 Sobic003G130900 Sobic003G130900 Sobic005G114500--Sobic003G130900 Sobic005G114500--Sobic003G230600 Sobic001G474400 Sobic001G474400 Sobic005G114500--Sobic001G474400 Sobic010G223400 Sobic010G223400 Sobic005G114500--Sobic010G223400 Sobic005G114500--Sobic001G308400 Sobic003G005900 Sobic003G005900 Sobic005G114500--Sobic003G005900 Sobic005G059500 Sobic005G059500 Sobic005G114500--Sobic005G059500 Sobic005G110499 Sobic005G110499 Sobic005G114500--Sobic005G110499 Sobic009G122500 Sobic009G122500 Sobic005G114500--Sobic009G122500 Sobic001G125500--Sobic003G230600 Sobic001G125500--Sobic002G363800 Sobic001G125500--Sobic009G128500 Sobic003G256800 Sobic003G256800 Sobic001G125500--Sobic003G256800 Sobic001G125500--Sobic001G308400 Sobic006G245900 Sobic006G245900 Sobic001G125500--Sobic006G245900 Sobic002G381900 Sobic002G381900 Sobic001G125500--Sobic002G381900 Sobic002G241600 Sobic002G241600 Sobic001G125500--Sobic002G241600 Sobic002G296400 Sobic002G296400 Sobic001G125500--Sobic002G296400 Sobic010G169900 Sobic010G169900 Sobic009G128500--Sobic010G169900 Sobic009G128500--Sobic001G308400 Sobic003G193500 Sobic003G193500 Sobic009G128500--Sobic003G193500 Sobic009G128500--Sobic009G122500 Sobic002G355800 Sobic002G355800 Sobic009G128500--Sobic002G355800 Sobic009G116900 Sobic009G116900 Sobic009G128500--Sobic009G116900 Sobic009G128500--Sobic010G223400 Sobic003G021600 Sobic003G021600 Sobic009G128500--Sobic003G021600 Sobic001G490900 Sobic001G490900 Sobic009G128500--Sobic001G490900 Sobic004G265500 Sobic004G265500 Sobic001G308400--Sobic004G265500 Sobic002G227500 Sobic002G227500 Sobic001G308400--Sobic002G227500 SobicK028600 SobicK028600 Sobic001G308400--SobicK028600 Sobic003G043000 Sobic003G043000 Sobic001G308400--Sobic003G043000 Sobic001G308400--Sobic010G169900 Sobic006G128100 Sobic006G128100 Sobic001G308400--Sobic006G128100 Sobic004G357100 Sobic004G357100 Sobic001G308400--Sobic004G357100 Sobic001G156900 Sobic001G156900 Sobic001G308400--Sobic001G156900 Sobic003G394200 Sobic003G394200 Sobic001G308400--Sobic003G394200 Sobic007G145400--Sobic001G474400 Sobic009G003700 Sobic009G003700 Sobic007G145400--Sobic009G003700 Sobic001G248100 Sobic001G248100 Sobic007G145400--Sobic001G248100 Sobic002G119600 Sobic002G119600 Sobic007G145400--Sobic002G119600 Sobic006G261400 Sobic006G261400 Sobic007G145400--Sobic006G261400 Sobic003G314700 Sobic003G314700 Sobic007G145400--Sobic003G314700 Sobic001G467100 Sobic001G467100 Sobic007G145400--Sobic001G467100 Sobic007G145400--Sobic008G092800 Sobic007G145400--Sobic006G245900 Sobic008G092800--Sobic003G143800 Sobic008G092800--Sobic007G145400 Sobic003G016500 Sobic003G016500 Sobic008G092800--Sobic003G016500 Sobic008G092800--Sobic001G248100 Sobic010G262100 Sobic010G262100 Sobic008G092800--Sobic010G262100 Sobic001G437400 Sobic001G437400 Sobic008G092800--Sobic001G437400 Sobic007G047600 Sobic007G047600 Sobic008G092800--Sobic007G047600 Sobic006G181800 Sobic006G181800 Sobic008G092800--Sobic006G181800 Sobic002G371600 Sobic002G371600 Sobic008G092800--Sobic002G371600 Sobic008G124800 Sobic008G124800 Sobic003G143800--Sobic008G124800 Sobic006G021700 Sobic006G021700 Sobic003G143800--Sobic006G021700 Sobic001G015400 Sobic001G015400 Sobic003G143800--Sobic001G015400 Sobic007G155500 Sobic007G155500 Sobic003G143800--Sobic007G155500 Sobic003G143800--Sobic008G092800 Sobic002G340900 Sobic002G340900 Sobic003G143800--Sobic002G340900 Sobic004G141800 Sobic004G141800 Sobic003G143800--Sobic004G141800 Sobic003G143800--Sobic005G114500 Sobic003G405500 Sobic003G405500 Sobic003G143800--Sobic003G405500 Sobic002G363800--Sobic002G296400 Sobic002G363800--Sobic002G371600 Sobic002G363800--Sobic001G125500 Sobic001G097900 Sobic001G097900 Sobic002G363800--Sobic001G097900 Sobic002G363800--Sobic003G256800 Sobic002G363800--Sobic008G092800 Sobic002G363800--Sobic007G145400 Sobic001G340000 Sobic001G340000 Sobic002G363800--Sobic001G340000 Sobic002G363800--Sobic003G230600 Sobic001G097500--Sobic005G114500 Sobic001G097500--Sobic001G474400 Sobic001G097500--Sobic009G003700 Sobic003G314300 Sobic003G314300 Sobic001G097500--Sobic003G314300 Sobic003G182300 Sobic003G182300 Sobic001G097500--Sobic003G182300 Sobic001G012900 Sobic001G012900 Sobic001G097500--Sobic001G012900 Sobic001G097500--Sobic010G223400 Sobic006G203300 Sobic006G203300 Sobic001G097500--Sobic006G203300 Sobic001G193100 Sobic001G193100 Sobic001G097500--Sobic001G193100
Octagon: transcription factors


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