Gene annotation
Transcriptome id Sobic.006G239400.1
Synonym Sb06g030580, UBP22
Functional annotation ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed
UniProt C5Y918
Pfam PF02148 PF13423
Panther DB PTHR24006 PTHR24006:SF465
NCBI CDD KOG1867; Ubiquitin-specific protease
KEGG Orthology K11366; USP22_27_51, ubiquitin carboxyl-terminal hydrolase 22/27/51
Gene Ontology GO:0008270; zinc ion binding


Orthologs (automatic annotation)
TAIR AT5G10790 : ubiquitin-specific protease 22
RAP-DB (Rice) LOC_Os04g55360.1 : ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed
MaizeGDB (Corn) Zm00025a009556 , Zm00025a053913 , Zm00025a021055
Brachypodium KQK10122 , KQJ84954
Barley HORVU2Hr1G114330.10 , HORVU2Hr1G114330.11 , HORVU2Hr1G114330.8 , HORVU2Hr1G114330.9 , HORVU2Hr1G114330.4 , HORVU2Hr1G114330.5 , HORVU2Hr1G114330.6 , HORVU2Hr1G114330.7 , HORVU2Hr1G114330.1 , HORVU2Hr1G114330.2 , HORVU2Hr1G114330.3
Wheat TraesCS2A02G516100 , TraesCS2D02G517600 , TraesCS2D02G517600 , TraesCS2B02G544700 , TraesCS2B02G544700
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G209200 serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B, putative, expressed K04354: serine/threonine-protein phosphatase 2A regulatory subunit B
2 Sobic.009G077600 glycosyl hydrolase family 47 domain contain protein, expressed K01230: MAN1A_C, mannosyl-oligosaccharide alpha-1,2-mannosidase
3 Sobic.009G128500 CBS domain containing protein, expressed K16302: metal transporter CNNM
4 Sobic.007G005500 ECT protein, putative, expressed -
5 Sobic.006G077300 expressed protein K17637: EXOC2, exocyst complex component 2
6 Sobic.006G203300 GPR89A, putative, expressed -
7 Sobic.010G223400 expressed protein -
8 Sobic.006G021700 expressed protein K17600: vacuolar protein sorting-associated protein 54
9 Sobic.001G308400 expressed protein -
10 Sobic.003G284000 CAMK_KIN1/SNF1/Nim1_like_AMPKh.3 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K07198: PRKAA, 5'-AMP-activated protein kinase, catalytic alpha subunit
11 Sobic.003G394200 vacuolar protein sorting-associated protein 53, putative, expressed -
12 Sobic.001G097500 expressed protein -
13 Sobic.010G169900 serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B, putative, expressed K04354: serine/threonine-protein phosphatase 2A regulatory subunit B
14 Sobic.004G223300 ARF GTPase-activating domain-containing protein, putative, expressed K12489: Arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein
15 Sobic.005G114500 growth regulator related protein, putative, expressed -
16 Sobic.003G314300 WD domain, G-beta repeat domain containing protein, expressed -
17 Sobic.001G097900 expressed protein -
18 Sobic.003G230600 transcription factor X1, putative, expressed -
19 Sobic.001G445500 coatomer subunit gamma-1, putative, expressed K17267: coatomer subunit gamma
20 Sobic.003G193500 CK1_CaseinKinase_1.2 - CK1 includes the casein kinase 1 kinases, expressed K02218: CSNK1, casein kinase 1


Gene co-expression network
sample Sobic006G239400 Sobic006G239400 Sobic003G209200 Sobic003G209200 Sobic006G239400--Sobic003G209200 Sobic009G077600 Sobic009G077600 Sobic006G239400--Sobic009G077600 Sobic009G128500 Sobic009G128500 Sobic006G239400--Sobic009G128500 Sobic007G005500 Sobic007G005500 Sobic006G239400--Sobic007G005500 Sobic006G077300 Sobic006G077300 Sobic006G239400--Sobic006G077300 Sobic006G203300 Sobic006G203300 Sobic006G239400--Sobic006G203300 Sobic010G223400 Sobic010G223400 Sobic006G239400--Sobic010G223400 Sobic006G021700 Sobic006G021700 Sobic006G239400--Sobic006G021700 Sobic001G308400 Sobic001G308400 Sobic006G239400--Sobic001G308400 Sobic003G209200--Sobic007G005500 Sobic006G260500 Sobic006G260500 Sobic003G209200--Sobic006G260500 Sobic003G209200--Sobic006G077300 Sobic003G209200--Sobic006G021700 Sobic005G062200 Sobic005G062200 Sobic003G209200--Sobic005G062200 Sobic004G241900 Sobic004G241900 Sobic003G209200--Sobic004G241900 Sobic004G261600 Sobic004G261600 Sobic003G209200--Sobic004G261600 Sobic005G110499 Sobic005G110499 Sobic003G209200--Sobic005G110499 Sobic003G209200--Sobic009G077600 Sobic009G077600--Sobic003G209200 Sobic008G055900 Sobic008G055900 Sobic009G077600--Sobic008G055900 Sobic009G077600--Sobic006G260500 Sobic004G207900 Sobic004G207900 Sobic009G077600--Sobic004G207900 Sobic004G100200 Sobic004G100200 Sobic009G077600--Sobic004G100200 Sobic009G077600--Sobic006G239400 Sobic009G077600--Sobic007G005500 Sobic003G050900 Sobic003G050900 Sobic009G077600--Sobic003G050900 Sobic010G223300 Sobic010G223300 Sobic009G077600--Sobic010G223300 Sobic010G169900 Sobic010G169900 Sobic009G128500--Sobic010G169900 Sobic009G128500--Sobic001G308400 Sobic003G193500 Sobic003G193500 Sobic009G128500--Sobic003G193500 Sobic009G122500 Sobic009G122500 Sobic009G128500--Sobic009G122500 Sobic002G355800 Sobic002G355800 Sobic009G128500--Sobic002G355800 Sobic009G116900 Sobic009G116900 Sobic009G128500--Sobic009G116900 Sobic009G128500--Sobic010G223400 Sobic003G021600 Sobic003G021600 Sobic009G128500--Sobic003G021600 Sobic001G490900 Sobic001G490900 Sobic009G128500--Sobic001G490900 Sobic007G005500--Sobic003G209200 Sobic007G005500--Sobic004G241900 Sobic007G005500--Sobic005G062200 Sobic007G005500--Sobic006G260500 Sobic007G005500--Sobic006G021700 Sobic007G005500--Sobic010G169900 Sobic010G000800 Sobic010G000800 Sobic007G005500--Sobic010G000800 Sobic007G005500--Sobic004G261600 Sobic007G005500--Sobic006G077300 Sobic006G077300--Sobic006G260500 Sobic006G077300--Sobic006G021700 Sobic006G077300--Sobic003G209200 Sobic001G056800 Sobic001G056800 Sobic006G077300--Sobic001G056800 Sobic002G401500 Sobic002G401500 Sobic006G077300--Sobic002G401500 Sobic003G114400 Sobic003G114400 Sobic006G077300--Sobic003G114400 Sobic006G077300--Sobic007G005500 Sobic006G077300--Sobic005G062200 Sobic002G042600 Sobic002G042600 Sobic006G077300--Sobic002G042600 Sobic003G394200 Sobic003G394200 Sobic006G203300--Sobic003G394200 Sobic003G346400 Sobic003G346400 Sobic006G203300--Sobic003G346400 Sobic006G203300--Sobic010G169900 Sobic004G236200 Sobic004G236200 Sobic006G203300--Sobic004G236200 Sobic001G445500 Sobic001G445500 Sobic006G203300--Sobic001G445500 Sobic004G254800 Sobic004G254800 Sobic006G203300--Sobic004G254800 Sobic006G203300--Sobic001G308400 Sobic001G474400 Sobic001G474400 Sobic006G203300--Sobic001G474400 Sobic003G036500 Sobic003G036500 Sobic006G203300--Sobic003G036500 Sobic010G223400--Sobic009G122500 Sobic010G223400--Sobic003G394200 Sobic005G059500 Sobic005G059500 Sobic010G223400--Sobic005G059500 Sobic001G193100 Sobic001G193100 Sobic010G223400--Sobic001G193100 Sobic003G182300 Sobic003G182300 Sobic010G223400--Sobic003G182300 Sobic005G114500 Sobic005G114500 Sobic010G223400--Sobic005G114500 Sobic010G223400--Sobic001G474400 Sobic004G078700 Sobic004G078700 Sobic010G223400--Sobic004G078700 Sobic001G012900 Sobic001G012900 Sobic010G223400--Sobic001G012900 Sobic008G124800 Sobic008G124800 Sobic006G021700--Sobic008G124800 Sobic006G021700--Sobic006G077300 Sobic002G340900 Sobic002G340900 Sobic006G021700--Sobic002G340900 Sobic006G021700--Sobic005G059500 Sobic006G021700--Sobic003G209200 Sobic006G021700--Sobic003G346400 Sobic006G021700--Sobic010G000800 Sobic006G021700--Sobic007G005500 Sobic006G021700--Sobic005G110499 Sobic004G265500 Sobic004G265500 Sobic001G308400--Sobic004G265500 Sobic002G227500 Sobic002G227500 Sobic001G308400--Sobic002G227500 SobicK028600 SobicK028600 Sobic001G308400--SobicK028600 Sobic003G043000 Sobic003G043000 Sobic001G308400--Sobic003G043000 Sobic001G308400--Sobic010G169900 Sobic006G128100 Sobic006G128100 Sobic001G308400--Sobic006G128100 Sobic004G357100 Sobic004G357100 Sobic001G308400--Sobic004G357100 Sobic001G156900 Sobic001G156900 Sobic001G308400--Sobic001G156900 Sobic001G308400--Sobic003G394200
Octagon: transcription factors


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