Gene annotation
Transcriptome id Sobic.003G314300.2
Synonym
Functional annotation WD domain, G-beta repeat domain containing protein, expressed
UniProt A0A1W0VZV4
Pfam PF00400
Panther DB PTHR22838 PTHR22838:SF4
NCBI CDD KOG0266; WD40 repeat-containing protein
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT2G16405 : Transducin/WD40 repeat-like superfamily protein
RAP-DB (Rice) LOC_Os01g56860.1 : WD domain, G-beta repeat domain containing protein, expressed
MaizeGDB (Corn) Zm00025a027332
Brachypodium KQK09970 , PNT72964 , PNT72965 , KQK10023
Barley HORVU2Hr1G037510.1 , HORVU3Hr1G076030.20 , HORVU3Hr1G076030.21 , HORVU3Hr1G076030.22 , HORVU3Hr1G076030.19 , HORVU3Hr1G076030.11 , HORVU3Hr1G076030.10 , HORVU3Hr1G076030.13 , HORVU3Hr1G076030.12 , HORVU3Hr1G076030.15 , HORVU3Hr1G076030.14 , HORVU3Hr1G076030.16 , HORVU2Hr1G037490.1 , HORVU2Hr1G037490.2 , HORVU3Hr1G076030.9 , HORVU3Hr1G076030.8 , HORVU3Hr1G076030.5 , HORVU3Hr1G076030.4 , HORVU3Hr1G076030.7 , HORVU3Hr1G076030.6 , HORVU3Hr1G076030.1 , HORVU3Hr1G076030.3 , HORVU3Hr1G076030.2 , HORVU3Hr1G076030.18
Wheat TraesCS3D02G311000 , TraesCS3D02G311000 , TraesCS3A02G320200 , TraesCS3A02G320200 , TraesCS3A02G320200 , TraesCS3B02G345700 , TraesCS3B02G345700
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G097500 expressed protein -
2 Sobic.005G017200 cytidylyltransferase domain containing protein, expressed K00967: ethanolamine-phosphate cytidylyltransferase
3 Sobic.010G223400 expressed protein -
4 Sobic.001G193100 expressed protein -
5 Sobic.005G114500 growth regulator related protein, putative, expressed -
6 Sobic.009G128500 CBS domain containing protein, expressed K16302: metal transporter CNNM
7 Sobic.004G207900 nucleotide-sugar transporter family protein, putative, expressed -
8 Sobic.001G097900 expressed protein -
9 Sobic.002G290100 expressed protein K08739: DNA mismatch repair protein MLH3
10 Sobic.001G012900 brefeldin A-sensitive Golgi protein-like, putative, expressed -
11 Sobic.001G445500 coatomer subunit gamma-1, putative, expressed K17267: coatomer subunit gamma
12 Sobic.001G467100 SURF1, putative, expressed K14998: SURF1, surfeit locus 1 family protein
13 Sobic.006G239400 ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed K11366: USP22_27_51, ubiquitin carboxyl-terminal hydrolase 22/27/51
14 Sobic.003G230600 transcription factor X1, putative, expressed -
15 Sobic.001G308400 expressed protein -
16 Sobic.004G277400 glucosyltransferase, putative, expressed K03849: alpha-1,3-glucosyltransferase
17 Sobic.006G203300 GPR89A, putative, expressed -
18 Sobic.003G193500 CK1_CaseinKinase_1.2 - CK1 includes the casein kinase 1 kinases, expressed K02218: CSNK1, casein kinase 1
19 Sobic.004G078700 tubulin binding cofactor C, putative, expressed K16810: TBCC domain-containing protein 1
20 Sobic.001G356100 GPI-anchored wall transfer protein 1, putative, expressed K05283: glucosaminylphosphatidylinositol acyltransferase


Gene co-expression network
sample Sobic003G314300 Sobic003G314300 Sobic001G097500 Sobic001G097500 Sobic003G314300--Sobic001G097500 Sobic005G017200 Sobic005G017200 Sobic003G314300--Sobic005G017200 Sobic010G223400 Sobic010G223400 Sobic003G314300--Sobic010G223400 Sobic001G193100 Sobic001G193100 Sobic003G314300--Sobic001G193100 Sobic005G114500 Sobic005G114500 Sobic003G314300--Sobic005G114500 Sobic009G128500 Sobic009G128500 Sobic003G314300--Sobic009G128500 Sobic004G207900 Sobic004G207900 Sobic003G314300--Sobic004G207900 Sobic001G097900 Sobic001G097900 Sobic003G314300--Sobic001G097900 Sobic002G290100 Sobic002G290100 Sobic003G314300--Sobic002G290100 Sobic001G097500--Sobic005G114500 Sobic001G474400 Sobic001G474400 Sobic001G097500--Sobic001G474400 Sobic009G003700 Sobic009G003700 Sobic001G097500--Sobic009G003700 Sobic001G097500--Sobic003G314300 Sobic003G182300 Sobic003G182300 Sobic001G097500--Sobic003G182300 Sobic001G012900 Sobic001G012900 Sobic001G097500--Sobic001G012900 Sobic001G097500--Sobic010G223400 Sobic006G203300 Sobic006G203300 Sobic001G097500--Sobic006G203300 Sobic001G097500--Sobic001G193100 Sobic005G017200--Sobic003G314300 Sobic005G017200--Sobic001G097500 Sobic001G356100 Sobic001G356100 Sobic005G017200--Sobic001G356100 Sobic005G017200--Sobic009G128500 Sobic005G017200--Sobic005G114500 Sobic005G017200--Sobic001G193100 Sobic004G078700 Sobic004G078700 Sobic005G017200--Sobic004G078700 Sobic005G017200--Sobic002G290100 Sobic003G230600 Sobic003G230600 Sobic005G017200--Sobic003G230600 Sobic009G122500 Sobic009G122500 Sobic010G223400--Sobic009G122500 Sobic003G394200 Sobic003G394200 Sobic010G223400--Sobic003G394200 Sobic005G059500 Sobic005G059500 Sobic010G223400--Sobic005G059500 Sobic010G223400--Sobic001G193100 Sobic010G223400--Sobic003G182300 Sobic010G223400--Sobic005G114500 Sobic010G223400--Sobic001G474400 Sobic010G223400--Sobic004G078700 Sobic010G223400--Sobic001G012900 Sobic001G193100--Sobic010G223400 Sobic001G193100--Sobic003G394200 Sobic001G193100--Sobic001G012900 Sobic001G061200 Sobic001G061200 Sobic001G193100--Sobic001G061200 Sobic007G173700 Sobic007G173700 Sobic001G193100--Sobic007G173700 Sobic004G084500 Sobic004G084500 Sobic001G193100--Sobic004G084500 Sobic004G060300 Sobic004G060300 Sobic001G193100--Sobic004G060300 Sobic001G193100--Sobic004G078700 Sobic010G074900 Sobic010G074900 Sobic001G193100--Sobic010G074900 Sobic003G130900 Sobic003G130900 Sobic005G114500--Sobic003G130900 Sobic005G114500--Sobic003G230600 Sobic005G114500--Sobic001G474400 Sobic005G114500--Sobic010G223400 Sobic001G308400 Sobic001G308400 Sobic005G114500--Sobic001G308400 Sobic003G005900 Sobic003G005900 Sobic005G114500--Sobic003G005900 Sobic005G114500--Sobic005G059500 Sobic005G110499 Sobic005G110499 Sobic005G114500--Sobic005G110499 Sobic005G114500--Sobic009G122500 Sobic010G169900 Sobic010G169900 Sobic009G128500--Sobic010G169900 Sobic009G128500--Sobic001G308400 Sobic003G193500 Sobic003G193500 Sobic009G128500--Sobic003G193500 Sobic009G128500--Sobic009G122500 Sobic002G355800 Sobic002G355800 Sobic009G128500--Sobic002G355800 Sobic009G116900 Sobic009G116900 Sobic009G128500--Sobic009G116900 Sobic009G128500--Sobic010G223400 Sobic003G021600 Sobic003G021600 Sobic009G128500--Sobic003G021600 Sobic001G490900 Sobic001G490900 Sobic009G128500--Sobic001G490900 Sobic001G161700 Sobic001G161700 Sobic004G207900--Sobic001G161700 Sobic009G077600 Sobic009G077600 Sobic004G207900--Sobic009G077600 Sobic004G100200 Sobic004G100200 Sobic004G207900--Sobic004G100200 Sobic001G023100 Sobic001G023100 Sobic004G207900--Sobic001G023100 Sobic003G346400 Sobic003G346400 Sobic004G207900--Sobic003G346400 Sobic004G025300 Sobic004G025300 Sobic004G207900--Sobic004G025300 Sobic002G141700 Sobic002G141700 Sobic004G207900--Sobic002G141700 Sobic008G129600 Sobic008G129600 Sobic004G207900--Sobic008G129600 Sobic002G294100 Sobic002G294100 Sobic004G207900--Sobic002G294100 Sobic010G192600 Sobic010G192600 Sobic001G097900--Sobic010G192600 Sobic001G097900--Sobic001G474400 Sobic001G445500 Sobic001G445500 Sobic001G097900--Sobic001G445500 Sobic006G106300 Sobic006G106300 Sobic001G097900--Sobic006G106300 Sobic001G097900--Sobic005G110499 Sobic002G227500 Sobic002G227500 Sobic001G097900--Sobic002G227500 Sobic001G097900--Sobic001G308400 Sobic009G040250 Sobic009G040250 Sobic001G097900--Sobic009G040250 Sobic001G097900--Sobic005G114500 Sobic002G290100--Sobic001G356100 Sobic002G290100--Sobic003G314300 Sobic002G290100--Sobic009G128500 Sobic002G290100--Sobic005G017200 Sobic003G435400 Sobic003G435400 Sobic002G290100--Sobic003G435400 Sobic006G112500 Sobic006G112500 Sobic002G290100--Sobic006G112500 Sobic005G087300 Sobic005G087300 Sobic002G290100--Sobic005G087300 Sobic004G049200 Sobic004G049200 Sobic002G290100--Sobic004G049200 Sobic002G290100--Sobic009G116900
Octagon: transcription factors


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