Gene annotation
Transcriptome id Sobic.002G290100.5,Sobic.002G290100.4,Sobic.002G290100.3,Sobic.002G290100.6,Sobic.002G290100.1
Synonym MLH3, ATMLH3
Functional annotation expressed protein
UniProt A0A1B6QE12 , A0A1W0W6B3 , A0A1B6QDZ8
Pfam PF13589 PF08676 PF01119 PF08676
Panther DB PTHR10073 PTHR10073:SF7
NCBI CDD KOG1977; DNA mismatch repair protein - MLH3 family
KEGG Orthology K08739; DNA mismatch repair protein MLH3
Gene Ontology GO:0006298; mismatch repair GO:0005524ATP binding GO:0007131reciprocal meiotic recombination GO:0006298mismatch repair GO:0005524ATP binding GO:0007131reciprocal meiotic recombination


Orthologs (automatic annotation)
TAIR AT4G35520 : MUTL protein homolog 3
RAP-DB (Rice) LOC_Os09g37930.1 : expressed protein
MaizeGDB (Corn) Zm00025a054826 , Zm00025a026004 , Zm00025a014521 , Zm00025a014516 , Zm00025a014514 , Zm00025a014515 , Zm00025a014513 , Zm00025a016844 , Zm00025a025798 , Zm00025a018328
Brachypodium PNT65098 , PNT65099 , PNT65092 , PNT65093 , PNT65094 , PNT65095 , PNT65096 , PNT65097 , PNT65100 , PNT65101
Barley HORVU5Hr1G087680.8 , HORVU5Hr1G087680.9 , HORVU5Hr1G087680.1 , HORVU5Hr1G087680.2 , HORVU5Hr1G087680.3 , HORVU5Hr1G087680.4 , HORVU5Hr1G087680.5 , HORVU5Hr1G087680.6 , HORVU5Hr1G087680.7 , HORVU5Hr1G087680.43 , HORVU5Hr1G087680.44 , HORVU5Hr1G087680.30 , HORVU5Hr1G087680.33 , HORVU5Hr1G087680.34 , HORVU5Hr1G087680.35 , HORVU5Hr1G087680.36 , HORVU5Hr1G087680.49 , HORVU5Hr1G087680.48 , HORVU5Hr1G087680.41 , HORVU5Hr1G087680.40 , HORVU5Hr1G087680.42 , HORVU5Hr1G087680.45 , HORVU5Hr1G087680.47 , HORVU5Hr1G087680.46 , HORVU5Hr1G087680.50 , HORVU5Hr1G087680.51 , HORVU5Hr1G087680.27 , HORVU0Hr1G013660.1 , HORVU5Hr1G087680.29 , HORVU5Hr1G087680.28 , HORVU5Hr1G087680.23 , HORVU5Hr1G087680.22 , HORVU5Hr1G087680.21 , HORVU5Hr1G087680.20 , HORVU5Hr1G087680.26 , HORVU5Hr1G087680.25 , HORVU5Hr1G087680.24 , HORVU5Hr1G087680.38 , HORVU5Hr1G087680.39 , HORVU5Hr1G087680.31 , HORVU5Hr1G087680.32 , HORVU5Hr1G087680.37 , HORVU5Hr1G087680.15 , HORVU5Hr1G087680.18 , HORVU5Hr1G087680.12 , HORVU5Hr1G087680.13 , HORVU5Hr1G087680.10 , HORVU5Hr1G087680.11 , HORVU5Hr1G087680.16 , HORVU5Hr1G087680.17 , HORVU5Hr1G087680.14 , HORVU5Hr1G087680.19
Wheat TraesCS5A02G352800 , TraesCS5D02G359800 , TraesCS5D02G359800 , TraesCS5D02G359800 , TraesCS5B02G355000 , TraesCS5B02G355000
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G356100 GPI-anchored wall transfer protein 1, putative, expressed K05283: glucosaminylphosphatidylinositol acyltransferase
2 Sobic.003G314300 WD domain, G-beta repeat domain containing protein, expressed -
3 Sobic.009G128500 CBS domain containing protein, expressed K16302: metal transporter CNNM
4 Sobic.005G017200 cytidylyltransferase domain containing protein, expressed K00967: ethanolamine-phosphate cytidylyltransferase
5 Sobic.003G435400 OsDegp14 - Putative Deg protease homologue, expressed -
6 Sobic.006G112500 CAF1 family ribonuclease containing protein, putative, expressed K01148: PARN, poly(A)-specific ribonuclease
7 Sobic.005G087300 protein kinase family protein, putative, expressed -
8 Sobic.004G049200 POLD1 - Putative DNA polymerase delta catalytic subunit, expressed K02327: DNA polymerase delta subunit 1
9 Sobic.009G116900 CW-type Zinc Finger, putative, expressed -
10 Sobic.010G169900 serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B, putative, expressed K04354: serine/threonine-protein phosphatase 2A regulatory subunit B
11 Sobic.003G409900 MYB family transcription factor, putative, expressed K12860: CDC5L, CDC5, pre-mRNA-splicing factor CDC5/CEF1
12 Sobic.001G404900 ubiquitin-activating enzyme, putative, expressed K03178: UBE1, ubiquitin-activating enzyme E1
13 Sobic.006G210700 potassium transporter, putative, expressed -
14 Sobic.002G076500 protein Kinase-associated protein phosphatase, putative, expressed K01090: protein phosphatase
15 Sobic.001G414100 expressed protein -
16 Sobic.001G114200 transmembrane anterior posterior transformation 1, putative, expressed -
17 Sobic.001G034000 mTERF family protein, expressed K15032: mTERF domain-containing protein, mitochondrial
18 Sobic.004G263500 DnaK family protein, putative, expressed K09486: hypoxia up-regulated 1
19 Sobic.001G125500 ethylene-insensitive protein, putative, expressed K14513: ethylene-insensitive protein 2
20 Sobic.009G040250 - -


Gene co-expression network
sample Sobic002G290100 Sobic002G290100 Sobic001G356100 Sobic001G356100 Sobic002G290100--Sobic001G356100 Sobic003G314300 Sobic003G314300 Sobic002G290100--Sobic003G314300 Sobic009G128500 Sobic009G128500 Sobic002G290100--Sobic009G128500 Sobic005G017200 Sobic005G017200 Sobic002G290100--Sobic005G017200 Sobic003G435400 Sobic003G435400 Sobic002G290100--Sobic003G435400 Sobic006G112500 Sobic006G112500 Sobic002G290100--Sobic006G112500 Sobic005G087300 Sobic005G087300 Sobic002G290100--Sobic005G087300 Sobic004G049200 Sobic004G049200 Sobic002G290100--Sobic004G049200 Sobic009G116900 Sobic009G116900 Sobic002G290100--Sobic009G116900 Sobic004G263500 Sobic004G263500 Sobic001G356100--Sobic004G263500 Sobic007G118500 Sobic007G118500 Sobic001G356100--Sobic007G118500 Sobic003G394500 Sobic003G394500 Sobic001G356100--Sobic003G394500 Sobic001G455000 Sobic001G455000 Sobic001G356100--Sobic001G455000 Sobic006G232800 Sobic006G232800 Sobic001G356100--Sobic006G232800 Sobic006G060000 Sobic006G060000 Sobic001G356100--Sobic006G060000 Sobic004G350700 Sobic004G350700 Sobic001G356100--Sobic004G350700 Sobic001G114200 Sobic001G114200 Sobic001G356100--Sobic001G114200 Sobic010G133400 Sobic010G133400 Sobic001G356100--Sobic010G133400 Sobic001G097500 Sobic001G097500 Sobic003G314300--Sobic001G097500 Sobic003G314300--Sobic005G017200 Sobic010G223400 Sobic010G223400 Sobic003G314300--Sobic010G223400 Sobic001G193100 Sobic001G193100 Sobic003G314300--Sobic001G193100 Sobic005G114500 Sobic005G114500 Sobic003G314300--Sobic005G114500 Sobic003G314300--Sobic009G128500 Sobic004G207900 Sobic004G207900 Sobic003G314300--Sobic004G207900 Sobic001G097900 Sobic001G097900 Sobic003G314300--Sobic001G097900 Sobic003G314300--Sobic002G290100 Sobic010G169900 Sobic010G169900 Sobic009G128500--Sobic010G169900 Sobic001G308400 Sobic001G308400 Sobic009G128500--Sobic001G308400 Sobic003G193500 Sobic003G193500 Sobic009G128500--Sobic003G193500 Sobic009G122500 Sobic009G122500 Sobic009G128500--Sobic009G122500 Sobic002G355800 Sobic002G355800 Sobic009G128500--Sobic002G355800 Sobic009G128500--Sobic009G116900 Sobic009G128500--Sobic010G223400 Sobic003G021600 Sobic003G021600 Sobic009G128500--Sobic003G021600 Sobic001G490900 Sobic001G490900 Sobic009G128500--Sobic001G490900 Sobic005G017200--Sobic003G314300 Sobic005G017200--Sobic001G097500 Sobic005G017200--Sobic001G356100 Sobic005G017200--Sobic009G128500 Sobic005G017200--Sobic005G114500 Sobic005G017200--Sobic001G193100 Sobic004G078700 Sobic004G078700 Sobic005G017200--Sobic004G078700 Sobic005G017200--Sobic002G290100 Sobic003G230600 Sobic003G230600 Sobic005G017200--Sobic003G230600 Sobic006G199700 Sobic006G199700 Sobic003G435400--Sobic006G199700 Sobic001G414100 Sobic001G414100 Sobic003G435400--Sobic001G414100 Sobic006G096800 Sobic006G096800 Sobic003G435400--Sobic006G096800 Sobic003G435400--Sobic002G290100 Sobic004G098800 Sobic004G098800 Sobic003G435400--Sobic004G098800 Sobic002G373600 Sobic002G373600 Sobic003G435400--Sobic002G373600 Sobic003G392275 Sobic003G392275 Sobic003G435400--Sobic003G392275 Sobic010G134700 Sobic010G134700 Sobic003G435400--Sobic010G134700 Sobic003G223800 Sobic003G223800 Sobic003G435400--Sobic003G223800 Sobic006G112500--Sobic006G232800 Sobic006G191000 Sobic006G191000 Sobic006G112500--Sobic006G191000 Sobic006G112500--Sobic003G394500 Sobic010G086300 Sobic010G086300 Sobic006G112500--Sobic010G086300 Sobic006G112500--Sobic001G356100 Sobic003G117800 Sobic003G117800 Sobic006G112500--Sobic003G117800 Sobic002G304700 Sobic002G304700 Sobic006G112500--Sobic002G304700 Sobic009G046900 Sobic009G046900 Sobic006G112500--Sobic009G046900 Sobic006G112500--Sobic003G021600 Sobic009G040250 Sobic009G040250 Sobic005G087300--Sobic009G040250 Sobic002G313100 Sobic002G313100 Sobic005G087300--Sobic002G313100 Sobic002G066800 Sobic002G066800 Sobic005G087300--Sobic002G066800 Sobic004G198300 Sobic004G198300 Sobic005G087300--Sobic004G198300 Sobic007G086600 Sobic007G086600 Sobic005G087300--Sobic007G086600 Sobic003G393200 Sobic003G393200 Sobic005G087300--Sobic003G393200 Sobic007G105700 Sobic007G105700 Sobic005G087300--Sobic007G105700 Sobic002G322400 Sobic002G322400 Sobic005G087300--Sobic002G322400 Sobic010G160300 Sobic010G160300 Sobic005G087300--Sobic010G160300 Sobic004G049200--Sobic002G290100 Sobic004G049200--Sobic003G314300 Sobic003G392550 Sobic003G392550 Sobic004G049200--Sobic003G392550 Sobic003G409900 Sobic003G409900 Sobic004G049200--Sobic003G409900 Sobic001G012900 Sobic001G012900 Sobic004G049200--Sobic001G012900 Sobic002G011100 Sobic002G011100 Sobic004G049200--Sobic002G011100 Sobic005G059500 Sobic005G059500 Sobic004G049200--Sobic005G059500 Sobic004G049200--Sobic005G017200 Sobic004G049200--Sobic001G097500 Sobic007G172700 Sobic007G172700 Sobic009G116900--Sobic007G172700 Sobic003G235100 Sobic003G235100 Sobic009G116900--Sobic003G235100 Sobic001G257800 Sobic001G257800 Sobic009G116900--Sobic001G257800 Sobic006G250800 Sobic006G250800 Sobic009G116900--Sobic006G250800 Sobic009G116900--Sobic004G350700 Sobic001G404900 Sobic001G404900 Sobic009G116900--Sobic001G404900 Sobic008G055500 Sobic008G055500 Sobic009G116900--Sobic008G055500 Sobic008G152700 Sobic008G152700 Sobic009G116900--Sobic008G152700 Sobic002G198100 Sobic002G198100 Sobic009G116900--Sobic002G198100
Octagon: transcription factors


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