Gene annotation
Transcriptome id Sobic.004G049200.1
Synonym EMB2780, Sb04g004200
Functional annotation POLD1 - Putative DNA polymerase delta catalytic subunit, expressed
UniProt C5XVE8
Pfam PF14260 PF03104 PF00136
Panther DB PTHR10322 PTHR10322:SF23
NCBI CDD -
KEGG Orthology K02327; DNA polymerase delta subunit 1
Gene Ontology GO:0008408; 3'-5' exonuclease activity GO:0003677DNA binding GO:0000166nucleotide binding


Orthologs (automatic annotation)
TAIR AT5G63960 : DNA binding;nucleotide binding;nucleic acid binding;DNA-directed DNA polymerases;DNA-directed DNA polymerases
RAP-DB (Rice) LOC_Os11g08330.1 : POLD1 - Putative DNA polymerase delta catalytic subunit, expressed
MaizeGDB (Corn) Zm00025a034047
Brachypodium PNT64020 , PNT64019
Barley HORVU4Hr1G017480.29 , HORVU4Hr1G017480.28 , HORVU4Hr1G017480.21 , HORVU4Hr1G017480.20 , HORVU4Hr1G017480.23 , HORVU4Hr1G017480.22 , HORVU4Hr1G017480.25 , HORVU4Hr1G017480.24 , HORVU4Hr1G017480.27 , HORVU4Hr1G017480.26 , HORVU4Hr1G017480.30 , HORVU4Hr1G017480.8 , HORVU4Hr1G017480.9 , HORVU4Hr1G017480.6 , HORVU4Hr1G017480.7 , HORVU4Hr1G017480.4 , HORVU4Hr1G017480.5 , HORVU4Hr1G017480.2 , HORVU4Hr1G017480.3 , HORVU4Hr1G017480.1 , HORVU4Hr1G017480.14 , HORVU4Hr1G017480.15 , HORVU4Hr1G017480.16 , HORVU4Hr1G017480.17 , HORVU4Hr1G017480.10 , HORVU4Hr1G017480.11 , HORVU4Hr1G017480.12 , HORVU4Hr1G017480.13 , HORVU4Hr1G017480.18 , HORVU4Hr1G017480.19
Wheat TraesCS4A02G220100 , TraesCS4D02G094700 , TraesCS4D02G094700
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G290100 expressed protein K08739: DNA mismatch repair protein MLH3
2 Sobic.003G314300 WD domain, G-beta repeat domain containing protein, expressed -
3 Sobic.003G392550 - -
4 Sobic.003G409900 MYB family transcription factor, putative, expressed K12860: CDC5L, CDC5, pre-mRNA-splicing factor CDC5/CEF1
5 Sobic.001G012900 brefeldin A-sensitive Golgi protein-like, putative, expressed -
6 Sobic.002G011100 expressed protein -
7 Sobic.005G059500 expressed protein -
8 Sobic.005G017200 cytidylyltransferase domain containing protein, expressed K00967: ethanolamine-phosphate cytidylyltransferase
9 Sobic.001G097500 expressed protein -
10 Sobic.003G435400 OsDegp14 - Putative Deg protease homologue, expressed -
11 Sobic.009G122500 expressed protein -
12 Sobic.004G043600 expressed protein -
13 Sobic.004G151200 RNA-binding protein-like, putative, expressed -
14 Sobic.002G270800 amino acid transporter, putative, expressed -
15 Sobic.001G282300 expressed protein -
16 Sobic.005G114500 growth regulator related protein, putative, expressed -
17 Sobic.003G230600 transcription factor X1, putative, expressed -
18 Sobic.004G207900 nucleotide-sugar transporter family protein, putative, expressed -
19 Sobic.003G182300 zinc finger family protein, putative, expressed K16284: E3 ubiquitin-protein ligase SIS3
20 Sobic.006G021700 expressed protein K17600: vacuolar protein sorting-associated protein 54


Gene co-expression network
sample Sobic004G049200 Sobic004G049200 Sobic002G290100 Sobic002G290100 Sobic004G049200--Sobic002G290100 Sobic003G314300 Sobic003G314300 Sobic004G049200--Sobic003G314300 Sobic003G392550 Sobic003G392550 Sobic004G049200--Sobic003G392550 Sobic003G409900 Sobic003G409900 Sobic004G049200--Sobic003G409900 Sobic001G012900 Sobic001G012900 Sobic004G049200--Sobic001G012900 Sobic002G011100 Sobic002G011100 Sobic004G049200--Sobic002G011100 Sobic005G059500 Sobic005G059500 Sobic004G049200--Sobic005G059500 Sobic005G017200 Sobic005G017200 Sobic004G049200--Sobic005G017200 Sobic001G097500 Sobic001G097500 Sobic004G049200--Sobic001G097500 Sobic001G356100 Sobic001G356100 Sobic002G290100--Sobic001G356100 Sobic002G290100--Sobic003G314300 Sobic009G128500 Sobic009G128500 Sobic002G290100--Sobic009G128500 Sobic002G290100--Sobic005G017200 Sobic003G435400 Sobic003G435400 Sobic002G290100--Sobic003G435400 Sobic006G112500 Sobic006G112500 Sobic002G290100--Sobic006G112500 Sobic005G087300 Sobic005G087300 Sobic002G290100--Sobic005G087300 Sobic002G290100--Sobic004G049200 Sobic009G116900 Sobic009G116900 Sobic002G290100--Sobic009G116900 Sobic003G314300--Sobic001G097500 Sobic003G314300--Sobic005G017200 Sobic010G223400 Sobic010G223400 Sobic003G314300--Sobic010G223400 Sobic001G193100 Sobic001G193100 Sobic003G314300--Sobic001G193100 Sobic005G114500 Sobic005G114500 Sobic003G314300--Sobic005G114500 Sobic003G314300--Sobic009G128500 Sobic004G207900 Sobic004G207900 Sobic003G314300--Sobic004G207900 Sobic001G097900 Sobic001G097900 Sobic003G314300--Sobic001G097900 Sobic003G314300--Sobic002G290100 Sobic009G122500 Sobic009G122500 Sobic003G392550--Sobic009G122500 Sobic003G346400 Sobic003G346400 Sobic003G392550--Sobic003G346400 Sobic003G036500 Sobic003G036500 Sobic003G392550--Sobic003G036500 Sobic003G392550--Sobic001G012900 Sobic001G085700 Sobic001G085700 Sobic003G392550--Sobic001G085700 Sobic004G254800 Sobic004G254800 Sobic003G392550--Sobic004G254800 Sobic001G335000 Sobic001G335000 Sobic003G392550--Sobic001G335000 Sobic004G060300 Sobic004G060300 Sobic003G392550--Sobic004G060300 Sobic002G115500 Sobic002G115500 Sobic003G392550--Sobic002G115500 Sobic006G106300 Sobic006G106300 Sobic003G409900--Sobic006G106300 Sobic001G389200 Sobic001G389200 Sobic003G409900--Sobic001G389200 Sobic006G060000 Sobic006G060000 Sobic003G409900--Sobic006G060000 Sobic003G409900--Sobic009G122500 Sobic003G021600 Sobic003G021600 Sobic003G409900--Sobic003G021600 Sobic003G409900--Sobic010G223400 Sobic003G409900--Sobic004G254800 Sobic001G015400 Sobic001G015400 Sobic003G409900--Sobic001G015400 Sobic003G409900--Sobic009G128500 Sobic003G293000 Sobic003G293000 Sobic001G012900--Sobic003G293000 Sobic001G012900--Sobic001G193100 Sobic001G012900--Sobic005G059500 Sobic001G161700 Sobic001G161700 Sobic001G012900--Sobic001G161700 Sobic001G012900--Sobic004G060300 Sobic001G012900--Sobic010G223400 Sobic001G012900--Sobic003G346400 Sobic001G012900--Sobic001G335000 Sobic001G012900--Sobic009G122500 Sobic009G194000 Sobic009G194000 Sobic002G011100--Sobic009G194000 Sobic005G026400 Sobic005G026400 Sobic002G011100--Sobic005G026400 Sobic002G011100--Sobic002G115500 Sobic002G235200 Sobic002G235200 Sobic002G011100--Sobic002G235200 Sobic004G224600 Sobic004G224600 Sobic002G011100--Sobic004G224600 Sobic004G007900 Sobic004G007900 Sobic002G011100--Sobic004G007900 Sobic004G277400 Sobic004G277400 Sobic002G011100--Sobic004G277400 Sobic001G034000 Sobic001G034000 Sobic002G011100--Sobic001G034000 Sobic002G398700 Sobic002G398700 Sobic002G011100--Sobic002G398700 Sobic006G021700 Sobic006G021700 Sobic005G059500--Sobic006G021700 Sobic001G118000 Sobic001G118000 Sobic005G059500--Sobic001G118000 Sobic005G059500--Sobic010G223400 Sobic005G059500--Sobic001G012900 Sobic005G059500--Sobic003G346400 Sobic005G059500--Sobic005G114500 Sobic001G474400 Sobic001G474400 Sobic005G059500--Sobic001G474400 Sobic005G059500--Sobic009G122500 Sobic002G070600 Sobic002G070600 Sobic005G059500--Sobic002G070600 Sobic005G017200--Sobic003G314300 Sobic005G017200--Sobic001G097500 Sobic005G017200--Sobic001G356100 Sobic005G017200--Sobic009G128500 Sobic005G017200--Sobic005G114500 Sobic005G017200--Sobic001G193100 Sobic004G078700 Sobic004G078700 Sobic005G017200--Sobic004G078700 Sobic005G017200--Sobic002G290100 Sobic003G230600 Sobic003G230600 Sobic005G017200--Sobic003G230600 Sobic001G097500--Sobic005G114500 Sobic001G097500--Sobic001G474400 Sobic009G003700 Sobic009G003700 Sobic001G097500--Sobic009G003700 Sobic001G097500--Sobic003G314300 Sobic003G182300 Sobic003G182300 Sobic001G097500--Sobic003G182300 Sobic001G097500--Sobic001G012900 Sobic001G097500--Sobic010G223400 Sobic006G203300 Sobic006G203300 Sobic001G097500--Sobic006G203300 Sobic001G097500--Sobic001G193100
Octagon: transcription factors


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