Gene annotation
Transcriptome id Sobic.002G270800.1
Synonym Sb02g030460, RPD1
Functional annotation amino acid transporter, putative, expressed
UniProt A0A1W0W5Z3
Pfam PF11955
Panther DB PTHR31476 PTHR31476:SF9
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G33495 : Ubiquitin carboxyl-terminal hydrolase family protein
RAP-DB (Rice) LOC_Os01g43040.1 : amino acid transporter, putative, expressed
MaizeGDB (Corn) Zm00025a047724
Brachypodium PNT64999 , KQJ98861 , KQJ87814 , PNT65001 , PNT65000
Barley HORVU5Hr1G080730.7
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G223900 extra-large G-protein-related, putative, expressed -
2 Sobic.004G305200 PPR repeat domain containing protein, putative, expressed -
3 Sobic.009G120600 expressed protein -
4 Sobic.010G066400 PPR repeat domain containing protein, putative, expressed -
5 Sobic.004G262600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@expressed protein -
6 Sobic.010G248000 EDR2, putative, expressed -
7 Sobic.003G327600 domain of unknown function, DUF250 domain containing protein, expressed -
8 Sobic.004G049200 POLD1 - Putative DNA polymerase delta catalytic subunit, expressed K02327: DNA polymerase delta subunit 1
9 Sobic.003G252500 1,3-beta-glucan synthase component, putative, expressed K11000: callose synthase
10 Sobic.002G009900 phytosulfokine receptor precursor, putative, expressed -
11 Sobic.004G331900 transmembrane 9 superfamily member, putative, expressed -
12 Sobic.003G435400 OsDegp14 - Putative Deg protease homologue, expressed -
13 Sobic.003G122400 expressed protein -
14 Sobic.004G277400 glucosyltransferase, putative, expressed K03849: alpha-1,3-glucosyltransferase
15 Sobic.005G017200 cytidylyltransferase domain containing protein, expressed K00967: ethanolamine-phosphate cytidylyltransferase
16 Sobic.003G392550 - -
17 Sobic.007G088400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@OsFBX291 - F-box domain containing protein, expressed -
18 Sobic.002G294100 DOMON domain containing protein, expressed -
19 Sobic.006G199700 ara54-like RING finger protein, putative, expressed K11971: RNF14, E3 ubiquitin-protein ligase RNF14
20 Sobic.003G198200 "similar to Protein phosphatase 2C, expressed in 4 stresses, namely drought, salt, cold and heat"(PubMedID : 29862293)@Negative regulator of ABA(PubMedID : 30367619)@protein phosphatase 2C, putative, expressed K14497: protein phosphatase 2C


Gene co-expression network
sample Sobic002G270800 Sobic002G270800 Sobic003G223900 Sobic003G223900 Sobic002G270800--Sobic003G223900 Sobic004G305200 Sobic004G305200 Sobic002G270800--Sobic004G305200 Sobic009G120600 Sobic009G120600 Sobic002G270800--Sobic009G120600 Sobic010G066400 Sobic010G066400 Sobic002G270800--Sobic010G066400 Sobic004G262600 Sobic004G262600 Sobic002G270800--Sobic004G262600 Sobic010G248000 Sobic010G248000 Sobic002G270800--Sobic010G248000 Sobic003G327600 Sobic003G327600 Sobic002G270800--Sobic003G327600 Sobic004G049200 Sobic004G049200 Sobic002G270800--Sobic004G049200 Sobic003G252500 Sobic003G252500 Sobic002G270800--Sobic003G252500 Sobic003G223900--Sobic004G262600 Sobic004G234300 Sobic004G234300 Sobic003G223900--Sobic004G234300 Sobic003G223900--Sobic002G270800 Sobic003G410700 Sobic003G410700 Sobic003G223900--Sobic003G410700 Sobic001G139300 Sobic001G139300 Sobic003G223900--Sobic001G139300 Sobic004G336100 Sobic004G336100 Sobic003G223900--Sobic004G336100 Sobic001G217300 Sobic001G217300 Sobic003G223900--Sobic001G217300 Sobic003G017200 Sobic003G017200 Sobic003G223900--Sobic003G017200 Sobic002G257900 Sobic002G257900 Sobic003G223900--Sobic002G257900 Sobic006G180700 Sobic006G180700 Sobic004G305200--Sobic006G180700 Sobic004G305200--Sobic002G270800 Sobic002G043500 Sobic002G043500 Sobic004G305200--Sobic002G043500 Sobic002G429400 Sobic002G429400 Sobic004G305200--Sobic002G429400 Sobic004G289400 Sobic004G289400 Sobic004G305200--Sobic004G289400 Sobic001G034500 Sobic001G034500 Sobic004G305200--Sobic001G034500 Sobic002G011100 Sobic002G011100 Sobic004G305200--Sobic002G011100 Sobic009G000400 Sobic009G000400 Sobic004G305200--Sobic009G000400 Sobic001G413800 Sobic001G413800 Sobic004G305200--Sobic001G413800 Sobic002G419600 Sobic002G419600 Sobic009G120600--Sobic002G419600 Sobic001G414100 Sobic001G414100 Sobic009G120600--Sobic001G414100 Sobic002G290100 Sobic002G290100 Sobic009G120600--Sobic002G290100 Sobic004G098800 Sobic004G098800 Sobic009G120600--Sobic004G098800 Sobic010G253400 Sobic010G253400 Sobic009G120600--Sobic010G253400 Sobic003G405600 Sobic003G405600 Sobic009G120600--Sobic003G405600 Sobic004G278700 Sobic004G278700 Sobic009G120600--Sobic004G278700 Sobic003G141600 Sobic003G141600 Sobic009G120600--Sobic003G141600 Sobic003G377500 Sobic003G377500 Sobic009G120600--Sobic003G377500 Sobic007G000300 Sobic007G000300 Sobic010G066400--Sobic007G000300 Sobic010G033600 Sobic010G033600 Sobic010G066400--Sobic010G033600 Sobic001G393900 Sobic001G393900 Sobic010G066400--Sobic001G393900 Sobic003G362900 Sobic003G362900 Sobic010G066400--Sobic003G362900 Sobic003G012000 Sobic003G012000 Sobic010G066400--Sobic003G012000 Sobic005G026400 Sobic005G026400 Sobic010G066400--Sobic005G026400 Sobic006G169500 Sobic006G169500 Sobic010G066400--Sobic006G169500 Sobic002G155000 Sobic002G155000 Sobic010G066400--Sobic002G155000 Sobic002G292800 Sobic002G292800 Sobic010G066400--Sobic002G292800 Sobic004G262600--Sobic003G410700 Sobic004G262600--Sobic003G223900 Sobic004G261200 Sobic004G261200 Sobic004G262600--Sobic004G261200 Sobic009G188800 Sobic009G188800 Sobic004G262600--Sobic009G188800 Sobic003G399000 Sobic003G399000 Sobic004G262600--Sobic003G399000 Sobic009G194200 Sobic009G194200 Sobic004G262600--Sobic009G194200 Sobic004G262600--Sobic001G217300 Sobic004G262600--Sobic001G139300 Sobic004G262600--Sobic003G017200 Sobic004G331900 Sobic004G331900 Sobic010G248000--Sobic004G331900 Sobic002G428600 Sobic002G428600 Sobic010G248000--Sobic002G428600 Sobic008G058200 Sobic008G058200 Sobic010G248000--Sobic008G058200 Sobic003G348200 Sobic003G348200 Sobic010G248000--Sobic003G348200 Sobic003G122400 Sobic003G122400 Sobic010G248000--Sobic003G122400 Sobic009G187600 Sobic009G187600 Sobic010G248000--Sobic009G187600 Sobic010G248000--Sobic003G327600 Sobic010G178800 Sobic010G178800 Sobic010G248000--Sobic010G178800 Sobic001G451901 Sobic001G451901 Sobic010G248000--Sobic001G451901 Sobic003G327600--Sobic004G331900 Sobic003G327600--Sobic003G348200 Sobic004G151200 Sobic004G151200 Sobic003G327600--Sobic004G151200 Sobic003G424300 Sobic003G424300 Sobic003G327600--Sobic003G424300 Sobic003G327600--Sobic010G248000 Sobic002G373600 Sobic002G373600 Sobic003G327600--Sobic002G373600 Sobic004G040700 Sobic004G040700 Sobic003G327600--Sobic004G040700 Sobic002G367800 Sobic002G367800 Sobic003G327600--Sobic002G367800 Sobic001G313301 Sobic001G313301 Sobic003G327600--Sobic001G313301 Sobic004G049200--Sobic002G290100 Sobic003G314300 Sobic003G314300 Sobic004G049200--Sobic003G314300 Sobic003G392550 Sobic003G392550 Sobic004G049200--Sobic003G392550 Sobic003G409900 Sobic003G409900 Sobic004G049200--Sobic003G409900 Sobic001G012900 Sobic001G012900 Sobic004G049200--Sobic001G012900 Sobic004G049200--Sobic002G011100 Sobic005G059500 Sobic005G059500 Sobic004G049200--Sobic005G059500 Sobic005G017200 Sobic005G017200 Sobic004G049200--Sobic005G017200 Sobic001G097500 Sobic001G097500 Sobic004G049200--Sobic001G097500 Sobic004G353600 Sobic004G353600 Sobic003G252500--Sobic004G353600 Sobic001G157400 Sobic001G157400 Sobic003G252500--Sobic001G157400 Sobic004G337900 Sobic004G337900 Sobic003G252500--Sobic004G337900 Sobic003G361300 Sobic003G361300 Sobic003G252500--Sobic003G361300 Sobic001G450800 Sobic001G450800 Sobic003G252500--Sobic001G450800 Sobic006G207900 Sobic006G207900 Sobic003G252500--Sobic006G207900 Sobic004G207900 Sobic004G207900 Sobic003G252500--Sobic004G207900 Sobic003G353400 Sobic003G353400 Sobic003G252500--Sobic003G353400 Sobic003G336100 Sobic003G336100 Sobic003G252500--Sobic003G336100
Octagon: transcription factors


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