Gene annotation
| Transcriptome id | Sobic.003G198200.1 |
|---|---|
| Synonym | Type 2C protein phosphate, PP2C, Sb03g026070, HAB2 |
| Functional annotation | "similar to Protein phosphatase 2C, expressed in 4 stresses, namely drought, salt, cold and heat" (PubMedID : 29862293) Negative regulator of ABA (PubMedID : 30367619) protein phosphatase 2C, putative, expressed |
| UniProt | C5XNV3 |
| Pfam | PF00481 |
| Panther DB | PTHR13832 PTHR13832:SF335 |
| NCBI CDD | KOG0698; Serine/threonine protein phosphatase |
| KEGG Orthology | K14497; protein phosphatase 2C |
| Gene Ontology | GO:0003824; catalytic activity GO:0006470protein dephosphorylation GO:0004722protein serine/threonine phosphatase activity |
Orthologs (automatic annotation)
| TAIR | AT1G72770 : homology to ABI1 |
|---|---|
| RAP-DB (Rice) | LOC_Os01g40094.1 : protein phosphatase 2C, putative, expressed |
| MaizeGDB (Corn) | Zm00025a028503 , Zm00025a038387 |
| Brachypodium | KQK08447 |
| Barley | HORVU3Hr1G050340.3 , HORVU3Hr1G050340.2 , HORVU3Hr1G050340.1 , HORVU3Hr1G050340.7 , HORVU3Hr1G050340.6 , HORVU3Hr1G050340.5 , HORVU3Hr1G050340.4 , HORVU7Hr1G029040.4 , HORVU7Hr1G029040.5 , HORVU7Hr1G029040.1 , HORVU7Hr1G029040.2 , HORVU7Hr1G029040.3 |
| Wheat | TraesCS3D02G212100 , TraesCS3B02G240000 |
| Populus | - |
JBrowse
| Sobic.003G198200 |
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.003G198150 | - | - |
| 2 | Sobic.004G170032 | - | - |
| 3 | Sobic.001G450800 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@trehalose-6-phosphate synthase, putative, expressed | K16055: trehalose 6-phosphate synthase/phosphatase |
| 4 | Sobic.002G148700 | Up-reguralion under heat(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@Up-reguralion under heat(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@heavy metal transport/detoxification protein, putative, expressed | - |
| 5 | Sobic.003G227600 | CPuORF29 - conserved peptide uORF-containing transcript, expressed | - |
| 6 | Sobic.004G337900 | ENTH domain containing protein, expressed | K12471: epsin |
| 7 | Sobic.008G029300 | SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@CBS domain containing membrane protein, putative, expressed | - |
| 8 | Sobic.004G353600 | sucrose transporters(PubMedID : 23805151)@Sucrose transporter genes(PubMedID : 24456189)@Sugar transporter(PubMedID : 27330561)@transporter, major facilitator family, putative, expressed | K15378: solute carrier family 45, member 1/2/4 |
| 9 | Sobic.002G387200 | Putative splicing factor(PubMedID : 24356560)@RNA recognition motif containing protein, putative, expressed | K12900: FUS-interacting serine-arginine-rich protein 1 |
| 10 | Sobic.003G361300 | "domain confirmed by Pfam database, expressed in leaf, stem and root, expression induced by expression induced by IAA, BR and ABA treatments"(PubMedID : 20528920)@transmembrane amino acid transporter protein, putative, expressed | K13946: AUX1, auxin influx carrier (AUX1 LAX family) |
| 11 | Sobic.001G469600 | "similar to Mannitol transporter, up-regulated under drought stress, mapped onto a stay green QTL (QSTG meta4.1)"(PubMedID : 24655390)@similar to Mannitol transporter(PubMedID : 24655390)@transporter family protein, putative, expressed | - |
| 12 | Sobic.009G128300 | CUE domain containing protein, expressed | - |
| 13 | Sobic.003G378000 | "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@F-box/LRR-repeat protein 2, putative, expressed | K03875: SKP2, F-box and leucine-rich repeat protein 1 (S-phase kinase-associated protein 2) |
| 14 | Sobic.010G260300 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein | - |
| 15 | Sobic.004G257350 | - | - |
| 16 | Sobic.002G110200 | SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@cytochrome P450, putative, expressed | - |
| 17 | Sobic.004G245900 | - | - |
| 18 | Sobic.009G216900 | down-regulated TF in developmental senescence(PubMedID : 27586543)@myb-like DNA-binding domain containing protein, putative, expressed | K09422: transcription factor MYB, plant |
| 19 | Sobic.003G233900 | - | - |
| 20 | Sobic.009G201500 | expressed high in San Chi San (an efficient nitrogen user)(PubMedID : 28697783)@HSP101 Heat shock protein 101("PubMedID : 26759170,PubMedID : 24597475")@heat shock protein 101, putative, expressed | K03695: ATP-dependent Clp protease ATP-binding subunit ClpB |
Gene co-expression network
Octagon: transcription factors
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