Gene annotation
Transcriptome id Sobic.003G378000.1
Synonym Sb03g041770, SKP2A
Functional annotation "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence." (PubMedID : 27586543)
F-box/LRR-repeat protein 2, putative, expressed
UniProt C5XRF6
Pfam PF00646 PF13516
Panther DB PTHR24006
NCBI CDD -
KEGG Orthology K03875; SKP2, F-box and leucine-rich repeat protein 1 (S-phase kinase-associated protein 2)
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT1G21410 : F-box/RNI-like superfamily protein
RAP-DB (Rice) LOC_Os01g65920.1 : F-box/LRR-repeat protein 2, putative, expressed
MaizeGDB (Corn) Zm00025a043737 , Zm00025a026569
Brachypodium KQK10896 , KQK10895 , PNT73315
Barley HORVU1Hr1G065030.4 , HORVU1Hr1G065030.3 , HORVU1Hr1G065030.2 , HORVU1Hr1G065030.1 , HORVU3Hr1G091200.1 , HORVU3Hr1G091200.2 , HORVU3Hr1G091200.5 , HORVU3Hr1G091200.4
Wheat TraesCS3B02G440600 , TraesCS3B02G440600 , TraesCS3D02G402900 , TraesCS3D02G402900
Populus -


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cDNA sequences
Sobic.003G378000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G155300 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@9-cis-epoxycarotenoid dioxygenase 1, chloroplast precursor, putative, expressed K09840: 9-cis-epoxycarotenoid dioxygenase
2 Sobic.004G170032 - -
3 Sobic.002G110200 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@cytochrome P450, putative, expressed -
4 Sobic.004G353600 sucrose transporters(PubMedID : 23805151)@Sucrose transporter genes(PubMedID : 24456189)@Sugar transporter(PubMedID : 27330561)@transporter, major facilitator family, putative, expressed K15378: solute carrier family 45, member 1/2/4
5 Sobic.006G078350 - -
6 Sobic.007G143200 Up-reguralion under drought(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@- -
7 Sobic.002G023900 Homeobox domain containing protein, expressed -
8 Sobic.007G143100 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@Up-reguralion under drought(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@- -
9 Sobic.007G169600 L1P family of ribosomal proteins domain containing protein, expressed K02865: RP-L10Ae, large subunit ribosomal protein L10Ae
10 Sobic.001G075101 - -
11 Sobic.006G078300 - -
12 Sobic.002G331450 - -
13 Sobic.002G037400 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@9-cis-epoxycarotenoid dioxygenase 1, chloroplast precursor, putative, expressed K09840: 9-cis-epoxycarotenoid dioxygenase
14 Sobic.003G397400 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Up-reguralion under drought(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@expressed protein -
15 Sobic.007G153001 - -
16 Sobic.003G087100 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@expressed protein -
17 Sobic.003G083000 glycosyl hydrolase family 10 protein, putative, expressed -
18 Sobic.002G342100 no apical meristem protein, putative, expressed -
19 Sobic.005G016900 CRP11 - Cysteine-rich family protein precursor, expressed -
20 Sobic.003G064300 - -


Gene co-expression network
sample Sobic003G378000 Sobic003G378000 Sobic001G155300 Sobic001G155300 Sobic003G378000--Sobic001G155300 Sobic004G170032 Sobic004G170032 Sobic003G378000--Sobic004G170032 Sobic002G110200 Sobic002G110200 Sobic003G378000--Sobic002G110200 Sobic004G353600 Sobic004G353600 Sobic003G378000--Sobic004G353600 Sobic006G078350 Sobic006G078350 Sobic003G378000--Sobic006G078350 Sobic007G143200 Sobic007G143200 Sobic003G378000--Sobic007G143200 Sobic002G023900 Sobic002G023900 Sobic003G378000--Sobic002G023900 Sobic007G143100 Sobic007G143100 Sobic003G378000--Sobic007G143100 Sobic007G169600 Sobic007G169600 Sobic003G378000--Sobic007G169600 Sobic001G155300--Sobic007G169600 Sobic002G037400 Sobic002G037400 Sobic001G155300--Sobic002G037400 Sobic002G342100 Sobic002G342100 Sobic001G155300--Sobic002G342100 Sobic001G155300--Sobic007G143100 Sobic001G075101 Sobic001G075101 Sobic001G155300--Sobic001G075101 Sobic003G083000 Sobic003G083000 Sobic001G155300--Sobic003G083000 Sobic006G203000 Sobic006G203000 Sobic001G155300--Sobic006G203000 Sobic005G016900 Sobic005G016900 Sobic001G155300--Sobic005G016900 Sobic009G076700 Sobic009G076700 Sobic001G155300--Sobic009G076700 Sobic004G170032--Sobic002G110200 Sobic002G182800 Sobic002G182800 Sobic004G170032--Sobic002G182800 Sobic009G128300 Sobic009G128300 Sobic004G170032--Sobic009G128300 Sobic002G331450 Sobic002G331450 Sobic004G170032--Sobic002G331450 Sobic004G170032--Sobic001G075101 Sobic004G170032--Sobic007G169600 Sobic003G198150 Sobic003G198150 Sobic004G170032--Sobic003G198150 Sobic001G509400 Sobic001G509400 Sobic004G170032--Sobic001G509400 Sobic003G227600 Sobic003G227600 Sobic004G170032--Sobic003G227600 Sobic002G110200--Sobic002G331450 Sobic002G110200--Sobic001G075101 Sobic002G110200--Sobic006G203000 Sobic002G110200--Sobic007G169600 Sobic002G110200--Sobic009G128300 Sobic002G110200--Sobic002G182800 Sobic002G013900 Sobic002G013900 Sobic002G110200--Sobic002G013900 Sobic002G110200--Sobic001G509400 Sobic002G110200--Sobic004G170032 Sobic003G272400 Sobic003G272400 Sobic004G353600--Sobic003G272400 Sobic002G306000 Sobic002G306000 Sobic004G353600--Sobic002G306000 Sobic006G078300 Sobic006G078300 Sobic004G353600--Sobic006G078300 Sobic003G087100 Sobic003G087100 Sobic004G353600--Sobic003G087100 Sobic004G353600--Sobic003G378000 Sobic001G157400 Sobic001G157400 Sobic004G353600--Sobic001G157400 Sobic003G332000 Sobic003G332000 Sobic004G353600--Sobic003G332000 Sobic001G075800 Sobic001G075800 Sobic004G353600--Sobic001G075800 Sobic004G353600--Sobic006G203000 Sobic006G078350--Sobic001G075101 Sobic006G078350--Sobic007G169600 Sobic006G078350--Sobic006G203000 Sobic006G078350--Sobic002G037400 Sobic006G078350--Sobic003G083000 Sobic006G078350--Sobic002G023900 Sobic007G153001 Sobic007G153001 Sobic006G078350--Sobic007G153001 Sobic006G078350--Sobic007G143100 Sobic006G078350--Sobic006G078300 Sobic007G143200--Sobic007G143100 Sobic007G143200--Sobic005G016900 Sobic007G073750 Sobic007G073750 Sobic007G143200--Sobic007G073750 Sobic007G143200--Sobic009G076700 Sobic003G397400 Sobic003G397400 Sobic007G143200--Sobic003G397400 Sobic007G143200--Sobic007G169600 Sobic007G143200--Sobic003G083000 Sobic007G143200--Sobic002G037400 Sobic007G143200--Sobic001G075101 Sobic002G023900--Sobic001G075101 Sobic002G023900--Sobic006G203000 Sobic002G023900--Sobic007G153001 Sobic002G023900--Sobic002G037400 Sobic002G023900--Sobic007G169600 Sobic002G023900--Sobic003G083000 Sobic002G023900--Sobic002G331450 Sobic003G040800 Sobic003G040800 Sobic002G023900--Sobic003G040800 Sobic001G106000 Sobic001G106000 Sobic002G023900--Sobic001G106000 Sobic007G143100--Sobic007G143200 Sobic007G143100--Sobic005G016900 Sobic007G143100--Sobic007G073750 Sobic007G143100--Sobic009G076700 Sobic007G143100--Sobic003G397400 Sobic007G143100--Sobic007G169600 Sobic007G143100--Sobic003G083000 Sobic007G143100--Sobic002G037400 Sobic007G143100--Sobic001G075101 Sobic007G169600--Sobic001G075101 Sobic007G169600--Sobic003G083000 Sobic007G169600--Sobic002G331450 Sobic007G169600--Sobic002G037400 Sobic007G169600--Sobic006G203000 Sobic007G169600--Sobic005G016900 Sobic007G169600--Sobic007G143100 Sobic002G325600 Sobic002G325600 Sobic007G169600--Sobic002G325600 Sobic007G169600--Sobic007G143200
Octagon: transcription factors


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