Gene annotation
Transcriptome id Sobic.002G023900.1
Synonym Sb02g002200, BP, KNAT1, BP1
Functional annotation Homeobox domain containing protein, expressed
UniProt C5X8S7
Pfam PF03789 PF05920 PF03790 PF03791
Panther DB PTHR11850 PTHR11850:SF110
NCBI CDD KOG0773; Transcription factor MEIS1 and related HOX domain proteins
KEGG Orthology -
Gene Ontology GO:0003677; DNA binding GO:0006355regulation of transcription, DNA-templated GO:0005634nucleus


Orthologs (automatic annotation)
TAIR AT4G08150 : KNOTTED-like from Arabidopsis thaliana
RAP-DB (Rice) LOC_Os07g03770.1 : Homeobox domain containing protein, expressed
MaizeGDB (Corn) Zm00025a007979 , Zm00025a008357 , Zm00025a024290 , Zm00025a038168 , Zm00025a044961 , Zm00025a053500 , Zm00025a007981 , Zm00025a007492 , Zm00025a040695 , Zm00025a016198
Brachypodium KQK13423 , KQK13422 , KQK04078 , PNT74065 , PNT74064 , PNT74063 , PNT74062 , KQK07913 , KQK20926 , KQK13818 , KQK13819
Barley HORVU1Hr1G015720.1 , HORVU1Hr1G015720.2 , HORVU1Hr1G015720.3 , HORVU1Hr1G015720.4 , HORVU1Hr1G015720.5 , HORVU1Hr1G015720.6 , HORVU1Hr1G015720.7 , HORVU1Hr1G015720.8 , HORVU1Hr1G015720.9 , HORVU4Hr1G009730.1 , HORVU4Hr1G009730.7 , HORVU4Hr1G009730.6 , HORVU4Hr1G009730.5 , HORVU4Hr1G009730.4 , HORVU4Hr1G084680.1 , HORVU4Hr1G084680.2 , HORVU4Hr1G084680.3 , HORVU4Hr1G084680.4 , HORVU4Hr1G084680.5 , HORVU7Hr1G114650.6 , HORVU7Hr1G114650.4 , HORVU7Hr1G114650.5 , HORVU7Hr1G114650.2 , HORVU7Hr1G114650.3 , HORVU7Hr1G114650.1 , HORVU2Hr1G061320.8 , HORVU2Hr1G061320.4 , HORVU2Hr1G061320.5 , HORVU2Hr1G061320.6 , HORVU2Hr1G061320.7 , HORVU2Hr1G061320.1 , HORVU2Hr1G061320.2 , HORVU2Hr1G061320.3 , HORVU4Hr1G003410.1 , HORVU4Hr1G003410.2 , HORVU4Hr1G003410.3 , HORVU4Hr1G003410.4 , HORVU4Hr1G003410.5 , HORVU4Hr1G003410.6 , HORVU4Hr1G003410.7 , HORVU4Hr1G003410.8 , HORVU5Hr1G098570.2 , HORVU5Hr1G098570.3 , HORVU5Hr1G098570.1 , HORVU5Hr1G098570.6 , HORVU5Hr1G098570.7 , HORVU5Hr1G098570.4 , HORVU5Hr1G098570.5 , HORVU5Hr1G098570.8 , HORVU5Hr1G098570.9 , HORVU4Hr1G009730.13 , HORVU4Hr1G009730.12 , HORVU4Hr1G009730.11 , HORVU4Hr1G009730.10 , HORVU5Hr1G098570.10 , HORVU5Hr1G098570.11 , HORVU4Hr1G009730.9 , HORVU4Hr1G009730.8 , HORVU1Hr1G015720.12 , HORVU1Hr1G015720.10 , HORVU1Hr1G015720.11 , HORVU4Hr1G009730.3 , HORVU4Hr1G009730.2 , HORVU4Hr1G003360.4 , HORVU4Hr1G003360.2 , HORVU4Hr1G003360.3 , HORVU4Hr1G003360.1
Wheat TraesCS2A02G267400 , TraesCS1A02G072800 , TraesCS5A02G405900 , TraesCS4A02G292200 , TraesCS4B02G057900 , TraesCS7D02G501000 , TraesCS7D02G501000 , TraesCS2B02G268200 , TraesCS4D02G019800 , TraesCS5B02G410600 , TraesCS7B02G423100 , TraesCS7B02G423100 , TraesCS7B02G423100 , TraesCS1B02G135600 , TraesCS1B02G135600 , TraesCS1D02G075700 , TraesCS2D02G256400 , TraesCS4A02G291900 , TraesCS4D02G058000 , TraesCS4A02G292200 , TraesCS4D02G019600 , TraesCS4D02G019600 , TraesCS1B02G091700 , TraesCS4D02G019900 , TraesCS4A02G256700 , TraesCS5B02G454600 , TraesCS5D02G415900 , TraesCS4A02G292100 , TraesCS4B02G021900 , TraesCS4B02G021900 , TraesCS4B02G021900
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G075101 - -
2 Sobic.006G203000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@immutans protein, putative, expressed K17893: AOX1, ubiquinol oxidase
3 Sobic.007G153001 - -
4 Sobic.002G037400 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@9-cis-epoxycarotenoid dioxygenase 1, chloroplast precursor, putative, expressed K09840: 9-cis-epoxycarotenoid dioxygenase
5 Sobic.007G169600 L1P family of ribosomal proteins domain containing protein, expressed K02865: RP-L10Ae, large subunit ribosomal protein L10Ae
6 Sobic.003G083000 glycosyl hydrolase family 10 protein, putative, expressed -
7 Sobic.002G331450 - -
8 Sobic.003G040800 WRKY102, expressed -
9 Sobic.001G106000 homeobox protein knotted-1, putative, expressed -
10 Sobic.001G157400 Class III HD ZIP family protein(PubMedID : 23915383)@START domain containing protein, expressed K09338: homeobox-leucine zipper protein
11 Sobic.006G026400 - -
12 Sobic.002G325600 ankyrin repeat family protein, putative, expressed -
13 Sobic.002G182800 expressed protein -
14 Sobic.007G143100 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@Up-reguralion under drought(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@- -
15 Sobic.005G016900 CRP11 - Cysteine-rich family protein precursor, expressed -
16 Sobic.009G128300 CUE domain containing protein, expressed -
17 Sobic.001G509400 - -
18 Sobic.006G078350 - -
19 Sobic.009G076700 expressed protein -
20 Sobic.007G143200 Up-reguralion under drought(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@- -


Gene co-expression network
sample Sobic002G023900 Sobic002G023900 Sobic001G075101 Sobic001G075101 Sobic002G023900--Sobic001G075101 Sobic006G203000 Sobic006G203000 Sobic002G023900--Sobic006G203000 Sobic007G153001 Sobic007G153001 Sobic002G023900--Sobic007G153001 Sobic002G037400 Sobic002G037400 Sobic002G023900--Sobic002G037400 Sobic007G169600 Sobic007G169600 Sobic002G023900--Sobic007G169600 Sobic003G083000 Sobic003G083000 Sobic002G023900--Sobic003G083000 Sobic002G331450 Sobic002G331450 Sobic002G023900--Sobic002G331450 Sobic003G040800 Sobic003G040800 Sobic002G023900--Sobic003G040800 Sobic001G106000 Sobic001G106000 Sobic002G023900--Sobic001G106000 Sobic001G075101--Sobic007G169600 Sobic001G075101--Sobic006G203000 Sobic001G075101--Sobic002G037400 Sobic001G075101--Sobic003G083000 Sobic001G075101--Sobic002G331450 Sobic001G075101--Sobic007G153001 Sobic002G325600 Sobic002G325600 Sobic001G075101--Sobic002G325600 Sobic001G509400 Sobic001G509400 Sobic001G075101--Sobic001G509400 Sobic002G182800 Sobic002G182800 Sobic001G075101--Sobic002G182800 Sobic006G203000--Sobic002G037400 Sobic006G203000--Sobic001G075101 Sobic006G203000--Sobic007G169600 Sobic006G203000--Sobic002G331450 Sobic006G203000--Sobic003G083000 Sobic006G203000--Sobic002G325600 Sobic006G026400 Sobic006G026400 Sobic006G203000--Sobic006G026400 Sobic006G203000--Sobic002G023900 Sobic002G110200 Sobic002G110200 Sobic006G203000--Sobic002G110200 Sobic007G153001--Sobic001G075101 Sobic007G153001--Sobic007G169600 Sobic007G153001--Sobic003G083000 Sobic007G153001--Sobic002G023900 Sobic002G342100 Sobic002G342100 Sobic007G153001--Sobic002G342100 Sobic007G153001--Sobic002G331450 Sobic007G153001--Sobic002G037400 Sobic007G153001--Sobic006G203000 Sobic007G153001--Sobic002G325600 Sobic002G037400--Sobic006G203000 Sobic002G037400--Sobic007G169600 Sobic002G037400--Sobic001G075101 Sobic002G037400--Sobic003G083000 Sobic002G037400--Sobic002G331450 Sobic002G037400--Sobic006G026400 Sobic009G076700 Sobic009G076700 Sobic002G037400--Sobic009G076700 Sobic007G143100 Sobic007G143100 Sobic002G037400--Sobic007G143100 Sobic005G016900 Sobic005G016900 Sobic002G037400--Sobic005G016900 Sobic007G169600--Sobic001G075101 Sobic007G169600--Sobic003G083000 Sobic007G169600--Sobic002G331450 Sobic007G169600--Sobic002G037400 Sobic007G169600--Sobic006G203000 Sobic007G169600--Sobic005G016900 Sobic007G169600--Sobic007G143100 Sobic007G169600--Sobic002G325600 Sobic007G143200 Sobic007G143200 Sobic007G169600--Sobic007G143200 Sobic003G083000--Sobic007G169600 Sobic003G083000--Sobic001G075101 Sobic003G083000--Sobic002G331450 Sobic003G083000--Sobic002G037400 Sobic003G083000--Sobic006G203000 Sobic003G083000--Sobic005G016900 Sobic003G083000--Sobic007G143100 Sobic003G083000--Sobic002G325600 Sobic003G083000--Sobic007G143200 Sobic002G331450--Sobic007G169600 Sobic002G331450--Sobic001G075101 Sobic002G331450--Sobic002G325600 Sobic002G331450--Sobic003G083000 Sobic002G331450--Sobic002G110200 Sobic002G331450--Sobic006G203000 Sobic002G331450--Sobic002G037400 Sobic009G128300 Sobic009G128300 Sobic002G331450--Sobic009G128300 Sobic002G331450--Sobic002G182800 Sobic003G040800--Sobic001G106000 Sobic003G233900 Sobic003G233900 Sobic003G040800--Sobic003G233900 Sobic003G040800--Sobic002G182800 Sobic003G040800--Sobic009G128300 Sobic003G227600 Sobic003G227600 Sobic003G040800--Sobic003G227600 Sobic009G216900 Sobic009G216900 Sobic003G040800--Sobic009G216900 Sobic004G285100 Sobic004G285100 Sobic003G040800--Sobic004G285100 Sobic003G017200 Sobic003G017200 Sobic003G040800--Sobic003G017200 Sobic003G040800--Sobic001G509400 Sobic001G106000--Sobic003G040800 Sobic001G106000--Sobic003G017200 Sobic001G106000--Sobic003G233900 Sobic001G106000--Sobic004G285100 Sobic001G106000--Sobic009G128300 Sobic001G106000--Sobic002G023900 Sobic001G430700 Sobic001G430700 Sobic001G106000--Sobic001G430700 Sobic001G106000--Sobic003G227600 Sobic001G106000--Sobic007G153001
Octagon: transcription factors


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